Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48498 * 109.46824 * 239.99803 * 3 2 1 5 5 H 1.48506 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47084 * 119.99534 * 3 2 1 7 7 C 1.39864 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00227 * 160.81235 * 7 2 1 9 9 C 1.41109 * 119.99832 * 340.81687 * 7 2 1 10 10 C 1.40906 * 120.15652 * 335.02100 * 9 7 2 11 11 C 1.36311 * 119.83967 * 179.73992 * 10 9 7 12 12 C 1.39591 * 120.15895 * 0.54426 * 11 10 9 13 13 N 1.38862 * 119.84722 * 179.75941 * 12 11 10 14 14 C 1.39000 * 119.99294 * 324.06225 * 13 12 11 15 15 C 1.39275 * 119.93183 * 331.06442 * 14 13 12 16 16 C 1.37108 * 120.06644 * 179.72434 * 15 14 13 17 17 C 1.39857 * 119.93294 * 0.54756 * 16 15 14 18 18 C 1.47396 * 120.07396 * 179.70177 * 17 16 15 19 19 O 1.21516 * 120.00401 * 180.02562 * 18 17 16 20 20 O 1.34759 * 120.00016 * 0.02562 * 18 17 16 21 21 C 1.39864 * 119.86088 * 359.72434 * 17 16 15 22 22 C 1.37114 * 119.92478 * 0.02562 * 21 17 16 23 23 C 1.39591 * 120.31454 * 359.72841 * 12 11 10 24 24 C 1.36322 * 120.15779 * 359.97438 * 23 12 11 25 25 H 0.97009 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.07449 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.92146 * 180.24814 * 11 10 9 28 28 H 0.96992 * 120.00530 * 144.06294 * 13 12 11 29 29 H 1.07997 * 119.96575 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.03543 * 180.24628 * 16 15 14 31 31 H 0.96704 * 117.00557 * 179.97438 * 20 18 17 32 32 H 1.07994 * 120.03800 * 179.97438 * 21 17 16 33 33 H 1.08005 * 119.96092 * 179.97438 * 22 21 17 34 34 H 1.08003 * 119.92212 * 180.02562 * 23 12 11 35 35 H 1.07999 * 120.07981 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0083 -1.2112 0.0005 8 1 3.0432 -1.2374 -0.3068 9 6 1.3615 -2.3992 0.4026 10 6 0.2536 -2.3427 1.2714 11 6 -0.3696 -3.4939 1.6515 12 6 0.0942 -4.7274 1.1912 13 7 -0.5425 -5.8964 1.5865 14 6 -1.0599 -6.0053 2.8719 15 6 -0.4765 -5.2952 3.9184 16 6 -0.9881 -5.3962 5.1864 17 6 -2.0900 -6.2222 5.4306 18 6 -2.6385 -6.3381 6.7938 19 8 -3.5956 -7.0565 7.0046 20 8 -2.0785 -5.6474 7.8064 21 6 -2.6702 -6.9384 4.3786 22 6 -2.1570 -6.8291 3.1119 23 6 1.1948 -4.7913 0.3349 24 6 1.8241 -3.6477 -0.0582 25 1 -0.4851 0.8401 -0.0004 26 1 -0.1037 -1.3893 1.6316 27 1 -1.2214 -3.4519 2.3141 28 1 -0.6261 -6.6369 0.9656 29 1 0.3774 -4.6613 3.7301 30 1 -0.5377 -4.8422 5.9968 31 1 -2.4732 -5.7553 8.6826 32 1 -3.5208 -7.5773 4.5641 33 1 -2.6043 -7.3822 2.2992 34 1 1.5481 -5.7491 -0.0177 35 1 2.6757 -3.6987 -0.7204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -62.237161 kcal Electronic energy + Delta-G solvation = -20432.247433 eV Core-core repulsion = 17165.638581 eV Total energy + Delta-G solvation = -3266.608852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40875 -40.54629 -39.13842 -37.03451 -36.65679 -34.95706 -32.20390 -31.62881 -31.33171 -29.94426 -26.78584 -24.89518 -23.91624 -22.74868 -22.56081 -21.56974 -19.26944 -19.09226 -18.61191 -18.02171 -17.81359 -16.98881 -16.55229 -15.77780 -15.77371 -15.48692 -15.07647 -14.63796 -14.53797 -14.36888 -14.06035 -13.82035 -13.60473 -13.40396 -13.09356 -12.91162 -12.74752 -12.53220 -12.41245 -12.04447 -11.69004 -11.62185 -11.48790 -11.22516 -10.94629 -10.03158 -9.60831 -9.46585 -8.68699 -8.24090 -6.21040 -0.21295 0.49123 0.94589 1.13103 1.40064 1.48769 1.52431 1.68293 2.21689 2.22492 2.58443 2.70831 2.91780 3.73458 3.87915 4.01718 4.23659 4.37995 4.38384 4.43925 4.57562 4.65425 4.98134 5.06251 5.11492 5.16500 5.26733 5.32607 5.40471 5.43415 5.56979 5.65324 5.69585 5.84940 5.94214 6.08729 6.28488 6.52668 6.71450 6.90839 6.94591 7.06492 7.08924 8.32571 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.003622 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.001221 B = 7728.657521 C = 8528.518564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.071 3.929 10 C -0.168 4.168 11 C -0.115 4.115 12 C 0.030 3.970 13 N -0.659 5.659 14 C 0.238 3.762 15 C -0.202 4.202 16 C -0.016 4.016 17 C -0.210 4.210 18 C 0.539 3.461 19 O -0.558 6.558 20 O -0.509 6.509 21 C -0.013 4.013 22 C -0.197 4.197 23 C -0.108 4.108 24 C -0.220 4.220 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.413 0.587 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.430 0.570 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -8.660 8.063 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.069 3.931 10 C -0.188 4.188 11 C -0.136 4.136 12 C -0.065 4.065 13 N -0.280 5.280 14 C 0.133 3.867 15 C -0.224 4.224 16 C -0.035 4.035 17 C -0.213 4.213 18 C 0.387 3.613 19 O -0.452 6.452 20 O -0.322 6.322 21 C -0.032 4.032 22 C -0.219 4.219 23 C -0.129 4.129 24 C -0.240 4.240 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.251 0.749 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.292 0.708 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.142 0.858 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.698 -8.508 7.688 11.780 hybrid contribution -0.001 0.637 0.152 0.655 sum -2.699 -7.871 7.840 11.432 Atomic orbital electron populations 1.69900 1.08983 1.30646 1.35413 1.26702 0.95387 1.04420 0.91292 0.85315 0.78854 0.75896 0.80072 1.18353 1.19421 1.18531 1.19755 0.98980 0.92779 1.41132 0.90469 1.17935 0.92151 0.93193 0.89840 1.20817 1.00217 0.96702 1.01074 1.20394 0.99272 0.91902 1.01987 1.17126 0.97773 0.85145 1.06435 1.41502 1.59936 1.15640 1.10884 1.18331 0.90596 0.93001 0.84768 1.20846 1.02999 1.06254 0.92348 1.21139 0.92480 0.93409 0.96512 1.18900 1.03212 1.08483 0.90699 1.20791 0.79385 0.75233 0.85879 1.90842 1.28791 1.40222 1.85324 1.84553 1.60121 1.65613 1.21944 1.20969 0.97180 0.94358 0.90654 1.20762 0.96987 1.05848 0.98284 1.20384 0.94337 0.97956 1.00181 1.20777 1.04344 0.92628 1.06283 0.90156 0.88347 0.88473 0.74914 0.86473 0.83693 0.70826 0.83750 0.82918 0.85770 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.24 11.06 21.81 0.24 -42.00 16 2 C 0.04 1.83 5.10 85.23 0.43 2.26 16 3 Si 0.98 37.25 29.60 68.60 2.03 39.28 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.50 -25.92 9.02 23.37 0.21 -25.71 16 8 H 0.08 3.86 7.91 -2.92 -0.02 3.84 16 9 C 0.07 3.69 5.57 -21.27 -0.12 3.57 16 10 C -0.17 -8.50 8.64 22.47 0.19 -8.31 16 11 C -0.12 -5.08 7.95 22.15 0.18 -4.90 16 12 C 0.03 1.16 5.73 38.68 0.22 1.39 16 13 N -0.66 -20.09 5.37 -180.17 -0.97 -21.06 16 14 C 0.24 6.97 5.90 38.50 0.23 7.20 16 15 C -0.20 -6.23 8.10 22.25 0.18 -6.05 16 16 C -0.02 -0.44 9.58 22.40 0.21 -0.23 16 17 C -0.21 -5.56 5.88 -20.08 -0.12 -5.68 16 18 C 0.54 13.71 8.26 70.23 0.58 14.29 16 19 O -0.56 -16.71 17.12 19.78 0.34 -16.37 16 20 O -0.51 -9.61 12.67 -56.69 -0.72 -10.33 16 21 C -0.01 -0.31 9.56 22.40 0.21 -0.10 16 22 C -0.20 -4.80 9.91 22.25 0.22 -4.58 16 23 C -0.11 -4.28 9.90 22.15 0.22 -4.06 16 24 C -0.22 -10.08 9.74 22.47 0.22 -9.86 16 25 H 0.29 13.44 8.30 -92.70 -0.77 12.67 16 26 H 0.10 5.29 6.24 -2.91 -0.02 5.27 16 27 H 0.10 4.11 7.01 -2.91 -0.02 4.09 16 28 H 0.41 10.16 8.90 -92.71 -0.83 9.33 16 29 H 0.12 4.06 6.73 -2.91 -0.02 4.04 16 30 H 0.15 3.46 7.60 -2.91 -0.02 3.43 16 31 H 0.43 3.87 9.11 -74.05 -0.67 3.20 16 32 H 0.14 3.21 7.64 -2.91 -0.02 3.18 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -61.49 309.59 3.66 -57.83 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.34 Total: 33.43 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 3.08 Total: -40.78 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.73 Total: -63.06 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.38 Total: -26.70 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -61.49 3.66 -57.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.404 kcal (2) G-P(sol) polarization free energy of solvation -61.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds