Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38229 * 119.99938 * 2 1 4 4 C 1.38236 * 120.00460 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00180 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99675 * 359.97438 * 4 3 2 7 7 S 1.76192 * 120.00061 * 180.02562 * 6 4 3 8 8 O 1.42101 * 106.40546 * 161.78082 * 7 6 4 9 9 O 1.42100 * 106.40495 * 28.86162 * 7 6 4 10 10 N 1.65601 * 107.21740 * 275.32080 * 7 6 4 11 11 C 1.46500 * 119.99803 * 90.00196 * 10 7 6 12 12 C 1.36941 * 120.00033 * 270.00032 * 10 7 6 13 13 H 1.07995 * 119.99774 * 29.13418 * 12 10 7 14 14 C 1.38814 * 119.99694 * 209.13363 * 12 10 7 15 15 N 1.31618 * 120.00324 * 358.12651 * 14 12 10 16 16 Si 1.86802 * 119.99701 * 178.11919 * 14 12 10 17 17 H 1.48503 * 109.46759 * 90.00218 * 16 14 12 18 18 H 1.48501 * 109.47328 * 210.00125 * 16 14 12 19 19 H 1.48496 * 109.47291 * 330.00851 * 16 14 12 20 20 C 1.38233 * 119.99719 * 0.27017 * 6 4 3 21 21 C 1.50704 * 119.99801 * 179.72881 * 20 6 4 22 22 C 1.38232 * 120.00158 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47239 * 90.00157 * 1 2 3 24 24 H 1.09001 * 109.46962 * 209.99945 * 1 2 3 25 25 H 1.09000 * 109.47289 * 329.99983 * 1 2 3 26 26 H 1.08013 * 120.00189 * 359.97438 * 3 2 1 27 27 H 1.09007 * 109.46973 * 258.05367 * 5 4 3 28 28 H 1.08993 * 109.47170 * 18.05592 * 5 4 3 29 29 H 1.09005 * 109.46760 * 138.06012 * 5 4 3 30 30 H 1.08999 * 109.47278 * 95.72966 * 11 10 7 31 31 H 1.09000 * 109.47078 * 215.72275 * 11 10 7 32 32 H 1.09001 * 109.47247 * 335.72331 * 11 10 7 33 33 H 0.96999 * 119.99858 * 179.97438 * 15 14 12 34 34 H 1.09003 * 109.46937 * 81.74985 * 21 20 6 35 35 H 1.09004 * 109.47337 * 201.74545 * 21 20 6 36 36 H 1.08997 * 109.47527 * 321.74531 * 21 20 6 37 37 H 1.08005 * 120.00067 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0001 0.0016 7 16 6.0336 0.0001 0.0030 8 8 6.4347 -1.2945 0.4301 9 8 6.4344 1.1943 0.6607 10 7 6.5250 0.1461 -1.5717 11 6 6.7423 1.4740 -2.1511 12 6 6.7283 -0.9744 -2.3322 13 1 6.1637 -1.8729 -2.1316 14 6 7.6601 -0.9552 -3.3610 15 7 8.3216 0.1505 -3.6294 16 14 7.9752 -2.4990 -4.3645 17 1 7.0566 -2.5272 -5.5309 18 1 9.3814 -2.5008 -4.8417 19 1 7.7379 -3.6963 -3.5186 20 6 3.5805 -1.1970 -0.0035 21 6 4.3341 -2.5021 -0.0085 22 6 2.1982 -1.1971 0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6581 2.1325 -0.0004 27 1 4.7002 2.7100 -1.0055 28 1 3.6693 3.3057 0.3177 29 1 5.1773 2.4352 0.6872 30 1 7.7990 1.7322 -2.0819 31 1 6.4376 1.4681 -3.1976 32 1 6.1519 2.2098 -1.6049 33 1 8.9729 0.1637 -4.3480 34 1 4.6431 -2.7471 1.0077 35 1 3.6893 -3.2926 -0.3927 36 1 5.2149 -2.4108 -0.6441 37 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057539128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = -34.258124 kcal Electronic energy + Delta-G solvation = -21406.258699 eV Core-core repulsion = 18276.307060 eV Total energy + Delta-G solvation = -3129.951639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.38653 -36.61631 -35.41429 -34.88831 -33.45482 -33.03676 -31.10569 -27.79268 -26.80728 -26.61404 -25.97539 -23.32871 -21.02943 -20.60473 -18.60544 -17.52250 -16.59329 -16.41616 -15.83730 -14.55689 -14.44623 -14.26961 -14.03143 -13.76271 -13.24175 -13.12514 -12.95124 -12.87061 -12.55986 -12.50141 -12.05678 -11.96010 -11.80525 -11.71751 -11.23131 -11.08426 -10.99868 -10.92420 -10.85876 -10.47410 -10.23617 -10.08679 -9.93390 -9.68046 -8.95210 -8.65287 -8.28057 -7.87506 -6.08817 -3.86652 1.13622 1.53301 1.61627 3.24956 3.32004 3.36375 3.68120 4.18169 4.48651 4.74373 4.83892 4.85336 5.06701 5.15785 5.22846 5.43575 5.48169 5.50839 5.65496 5.78162 5.82992 5.88309 5.92861 6.12035 6.17080 6.21891 6.43777 6.56055 6.60663 6.69496 6.81359 6.84128 7.03606 7.22569 7.30963 7.58097 7.74965 8.52032 9.07847 9.44726 10.93148 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.007106 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.601124 B = 3939.178468 C = 4389.789377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 C -0.162 4.162 4 C 0.030 3.970 5 C -0.186 4.186 6 C -0.681 4.681 7 S 2.673 3.327 8 O -0.964 6.964 9 O -0.985 6.985 10 N -0.854 5.854 11 C 0.132 3.868 12 C -0.312 4.312 13 H 0.094 0.906 14 C 0.042 3.958 15 N -0.887 5.887 16 Si 0.914 3.086 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.033 3.967 21 C -0.144 4.144 22 C -0.161 4.161 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 1.042 4.488 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.181 4.181 4 C 0.029 3.971 5 C -0.242 4.242 6 C -0.765 4.765 7 S 2.765 3.235 8 O -0.954 6.954 9 O -0.975 6.975 10 N -0.689 5.689 11 C -0.014 4.014 12 C -0.442 4.442 13 H 0.112 0.888 14 C -0.162 4.162 15 N -0.527 5.527 16 Si 0.740 3.260 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.193 1.193 20 C 0.032 3.968 21 C -0.200 4.200 22 C -0.180 4.180 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.283 1.044 5.121 12.434 hybrid contribution -0.752 -0.656 -1.081 1.471 sum -12.035 0.389 4.040 12.701 Atomic orbital electron populations 1.20858 0.91245 1.02750 1.02502 1.20059 0.95784 0.93375 0.94557 1.20935 0.93610 0.97419 1.06105 1.19582 0.93792 0.93876 0.89879 1.22100 1.03188 0.92972 1.05911 1.31156 1.29005 0.97809 1.18535 1.02327 0.74182 0.72909 0.74117 1.93488 1.80953 1.39793 1.81130 1.93298 1.81176 1.48104 1.74897 1.52589 1.78834 1.11062 1.26377 1.21349 1.00765 0.81123 0.98196 1.19088 1.20456 0.90433 1.14270 0.88848 1.25248 0.95107 0.97421 0.98449 1.70028 1.25892 1.25715 1.31062 0.86150 0.77740 0.82287 0.79777 1.20685 1.20876 1.19308 1.19651 0.93732 0.94104 0.89338 1.21484 1.01057 0.92442 1.05052 1.20946 0.93611 0.97467 1.05985 0.90825 0.91413 0.91438 0.85951 0.89574 0.91515 0.84763 0.92114 0.91888 0.95589 0.92636 0.89473 0.92059 0.87514 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.04 -0.54 5.88 -104.63 -0.62 -1.15 16 3 C -0.16 -2.48 9.32 -39.59 -0.37 -2.85 16 4 C 0.03 0.54 5.87 -104.62 -0.61 -0.08 16 5 C -0.19 -3.07 8.53 36.00 0.31 -2.76 16 6 C -0.68 -13.53 5.97 -39.58 -0.24 -13.76 16 7 S 2.67 60.48 5.03 -107.50 -0.54 59.94 16 8 O -0.96 -23.24 13.18 -57.17 -0.75 -24.00 16 9 O -0.98 -22.60 13.16 -57.17 -0.75 -23.35 16 10 N -0.85 -21.06 3.31 -66.69 -0.22 -21.28 16 11 C 0.13 3.08 8.59 59.85 0.51 3.59 16 12 C -0.31 -8.19 9.03 -15.06 -0.14 -8.32 16 13 H 0.09 2.35 5.78 -52.49 -0.30 2.05 16 14 C 0.04 1.11 5.35 -17.43 -0.09 1.02 16 15 N -0.89 -24.03 10.41 55.49 0.58 -23.45 16 16 Si 0.91 20.57 29.55 -169.99 -5.02 15.55 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.03 0.61 5.88 -104.62 -0.62 -0.01 16 21 C -0.14 -2.57 8.30 36.01 0.30 -2.27 16 22 C -0.16 -2.51 9.33 -39.58 -0.37 -2.88 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.12 1.52 8.02 -52.48 -0.42 1.10 16 27 H 0.09 1.41 5.72 -51.93 -0.30 1.11 16 28 H 0.07 0.88 7.98 -51.93 -0.41 0.47 16 29 H 0.13 2.47 4.80 -52.35 -0.25 2.22 16 30 H 0.06 1.52 7.28 -51.93 -0.38 1.14 16 31 H 0.06 1.51 7.39 -51.93 -0.38 1.13 16 32 H 0.03 0.52 4.38 -51.93 -0.23 0.29 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.09 1.51 7.80 -51.93 -0.41 1.10 16 35 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.11 2.19 3.93 -51.93 -0.20 1.99 16 37 H 0.12 1.57 8.05 -52.48 -0.42 1.15 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -30.10 299.82 -8.29 -38.38 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.52 Total: 3.99 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: -1.57 Total: -30.30 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.36 Total: -44.74 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.51 Total: -47.35 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 60.48 SS G_CDS: -0.54 Total: 59.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.10 -8.29 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.126 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds