Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86794 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47066 * 239.99659 * 3 2 1 5 5 H 1.48501 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47166 * 119.99797 * 3 2 1 7 7 C 1.39944 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99982 * 174.56357 * 7 2 1 9 9 C 1.41440 * 120.00221 * 354.56953 * 7 2 1 10 10 C 1.40780 * 120.18140 * 145.60640 * 9 7 2 11 11 C 1.37708 * 120.04410 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41655 * 359.97163 * 11 10 9 13 13 C 1.39890 * 120.35606 * 0.02562 * 12 11 10 14 14 C 1.47853 * 120.02898 * 180.02562 * 13 12 11 15 15 O 1.21557 * 119.99955 * 180.02562 * 14 13 12 16 16 N 1.34774 * 119.99770 * 359.97438 * 14 13 12 17 17 C 1.39840 * 119.99731 * 185.59786 * 16 14 13 18 18 C 1.38956 * 120.04058 * 214.37627 * 17 16 14 19 19 C 1.38117 * 120.03726 * 179.71927 * 18 17 16 20 20 C 1.38219 * 120.12716 * 0.55382 * 19 18 17 21 21 C 1.38767 * 120.08572 * 359.72177 * 20 19 18 22 22 O 1.35898 * 120.01909 * 179.97438 * 21 20 19 23 23 C 1.38626 * 119.96144 * 359.97438 * 21 20 19 24 24 C 1.39049 * 119.94541 * 0.02562 * 13 12 11 25 25 H 0.97000 * 119.99765 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.97281 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.79061 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.81846 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00122 * 5.59489 * 16 14 13 30 30 H 1.08001 * 119.98302 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.93937 * 180.27020 * 19 18 17 32 32 H 1.07997 * 119.95623 * 179.74524 * 20 19 18 33 33 H 0.96695 * 114.00043 * 270.02250 * 22 21 20 34 34 H 1.08001 * 120.06217 * 180.02562 * 23 21 20 35 35 H 1.08002 * 120.20396 * 180.25317 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0843 -1.2141 -0.0881 9 6 1.3055 -2.4341 0.1170 10 6 1.7654 -3.5817 -0.5563 11 6 1.0790 -4.7700 -0.4414 12 6 -0.0641 -4.8464 0.3345 13 6 -0.5363 -3.7167 1.0110 14 6 -1.7582 -3.8067 1.8385 15 8 -2.1683 -2.8246 2.4258 16 7 -2.4180 -4.9775 1.9409 17 6 -3.6355 -5.0363 2.6262 18 6 -3.9719 -6.1735 3.3503 19 6 -5.1719 -6.2293 4.0319 20 6 -6.0459 -5.1595 3.9865 21 6 -5.7177 -4.0234 3.2603 22 8 -6.5783 -2.9726 3.2162 23 6 -4.5115 -3.9611 2.5800 24 6 0.1446 -2.5090 0.9045 25 1 -0.4850 0.8401 0.0004 26 1 2.6572 -3.5300 -1.1635 27 1 1.4352 -5.6478 -0.9601 28 1 -0.5947 -5.7834 0.4182 29 1 -2.0483 -5.7793 1.5391 30 1 -3.2929 -7.0127 3.3835 31 1 -5.4299 -7.1123 4.5978 32 1 -6.9853 -5.2077 4.5172 33 1 -7.2133 -3.0146 2.4881 34 1 -4.2543 -3.0776 2.0146 35 1 -0.2140 -1.6351 1.4283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -33.544735 kcal Electronic energy + Delta-G solvation = -20698.109263 eV Core-core repulsion = 17432.744607 eV Total energy + Delta-G solvation = -3265.364655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34317 -38.90238 -37.30428 -36.52344 -34.23648 -33.64540 -30.74623 -29.87748 -29.54923 -28.83087 -25.38179 -23.70950 -22.62039 -21.67518 -20.99108 -19.65131 -18.64897 -17.77276 -16.55284 -16.19500 -16.02751 -15.50105 -15.10330 -14.75869 -14.62868 -14.25865 -13.93683 -13.46159 -13.24525 -12.76106 -12.60383 -12.50900 -12.21536 -11.74943 -11.60836 -11.19718 -11.16555 -10.83274 -10.68623 -10.54581 -10.16174 -10.07552 -9.77618 -9.32628 -9.18310 -8.66248 -8.03133 -7.71532 -7.51599 -6.75195 -4.49889 1.22474 1.37460 2.08334 2.75177 3.07474 3.09444 3.10347 3.38113 3.53563 3.83045 3.92906 4.28904 4.62427 4.91505 5.17144 5.19447 5.39069 5.47269 5.56676 5.63957 5.90996 5.97285 6.13643 6.32312 6.40672 6.46189 6.55838 6.61302 6.85493 6.91637 7.04652 7.17183 7.27478 7.56646 7.60363 7.69027 7.77317 7.93304 8.09611 8.42882 8.66770 8.74980 8.79346 10.20422 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.004211 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.077481 B = 6647.521806 C = 7791.913324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.080 0.920 9 C 0.100 3.900 10 C -0.197 4.197 11 C -0.103 4.103 12 C -0.207 4.207 13 C -0.135 4.135 14 C 0.563 3.437 15 O -0.520 6.520 16 N -0.680 5.680 17 C 0.180 3.820 18 C -0.164 4.164 19 C -0.085 4.085 20 C -0.173 4.173 21 C 0.123 3.877 22 O -0.497 6.497 23 C -0.150 4.150 24 C -0.075 4.075 25 H 0.284 0.716 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.411 0.589 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.388 0.612 34 H 0.142 0.858 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 -10.032 2.878 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.098 0.902 9 C 0.097 3.903 10 C -0.217 4.217 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.138 4.138 14 C 0.356 3.644 15 O -0.395 6.395 16 N -0.326 5.326 17 C 0.085 3.915 18 C -0.184 4.184 19 C -0.104 4.104 20 C -0.192 4.192 21 C 0.078 3.922 22 O -0.307 6.307 23 C -0.171 4.171 24 C -0.095 4.095 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.249 0.751 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.244 0.756 34 H 0.160 0.840 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.773 -8.914 3.735 13.053 hybrid contribution 0.234 0.188 -0.719 0.780 sum -8.539 -8.726 3.016 12.576 Atomic orbital electron populations 1.69717 1.07349 1.29675 1.35831 1.25913 0.94933 1.01352 0.92428 0.86243 0.79862 0.80035 0.79842 1.19026 1.20259 1.18844 1.19513 0.95010 0.89925 1.45195 0.90166 1.17616 0.91464 0.92563 0.88640 1.21270 1.02517 0.94124 1.03826 1.20468 0.95707 0.96862 0.99044 1.20396 1.00315 0.95933 1.06087 1.19394 0.95823 0.96432 1.02201 1.19047 0.83894 0.81521 0.79982 1.90750 1.67872 1.35869 1.45046 1.43693 1.20375 1.13142 1.55406 1.17619 0.85754 0.94734 0.93431 1.20936 0.98900 0.98769 0.99826 1.20735 0.93309 0.98085 0.98275 1.21302 1.01372 0.93247 1.03284 1.18264 0.90178 0.86743 0.96976 1.84839 1.48073 1.43415 1.54365 1.21492 0.93341 1.00148 1.02073 1.21691 0.95696 0.95012 0.97091 0.90502 0.88290 0.88588 0.89049 0.75131 0.85528 0.85449 0.85683 0.75605 0.84009 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.19 10.97 55.55 0.61 -20.58 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 3 Si 0.92 18.85 29.56 -169.99 -5.03 13.83 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.47 -12.11 9.04 -37.73 -0.34 -12.45 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.57 5.50 -106.87 -0.59 1.98 16 10 C -0.20 -4.53 9.78 -38.81 -0.38 -4.91 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.48 16 12 C -0.21 -4.14 9.54 -38.92 -0.37 -4.52 16 13 C -0.14 -3.09 5.87 -105.04 -0.62 -3.70 16 14 C 0.56 12.09 7.49 -12.33 -0.09 12.00 16 15 O -0.52 -12.84 14.12 5.32 0.08 -12.77 16 16 N -0.68 -11.35 5.28 -10.73 -0.06 -11.41 16 17 C 0.18 2.86 6.25 -83.74 -0.52 2.33 16 18 C -0.16 -2.05 9.96 -39.36 -0.39 -2.45 16 19 C -0.09 -0.95 10.03 -39.63 -0.40 -1.35 16 20 C -0.17 -2.09 9.98 -39.39 -0.39 -2.48 16 21 C 0.12 1.79 6.70 -39.24 -0.26 1.53 16 22 O -0.50 -6.62 13.50 -19.42 -0.26 -6.88 16 23 C -0.15 -2.54 8.59 -39.24 -0.34 -2.88 16 24 C -0.07 -1.95 8.16 -38.43 -0.31 -2.26 16 25 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 26 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 27 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.09 1.46 6.40 -52.49 -0.34 1.13 16 29 H 0.41 5.61 6.86 -40.82 -0.28 5.33 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.39 3.06 9.06 45.56 0.41 3.48 16 34 H 0.14 2.79 6.52 -52.49 -0.34 2.44 16 35 H 0.13 3.81 6.06 -52.49 -0.32 3.50 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -30.99 308.30 -8.04 -39.02 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -2.52 Total: 14.08 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -5.50 Total: -19.94 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.55 Total: -31.99 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.19 Total: -19.65 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.99 -8.04 -39.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.480 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds