Wall clock time and date at job start Tue Mar 31 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86806 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47301 * 270.00295 * 3 2 1 5 5 H 1.48499 * 109.46879 * 30.00245 * 3 2 1 6 6 H 1.48494 * 109.46729 * 150.00196 * 3 2 1 7 7 C 1.40274 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99891 * 189.19481 * 7 2 1 9 9 C 1.40873 * 120.00276 * 9.19520 * 7 2 1 10 10 C 1.40710 * 120.32806 * 33.91998 * 9 7 2 11 11 C 1.37584 * 119.88598 * 180.29601 * 10 9 7 12 12 C 1.38848 * 120.56914 * 359.70692 * 11 10 9 13 13 C 1.38197 * 120.68296 * 359.97260 * 12 11 10 14 14 C 1.39248 * 120.08920 * 0.04171 * 13 12 11 15 15 C 1.47381 * 120.28702 * 179.97438 * 14 13 12 16 16 O 1.21629 * 120.00275 * 185.75353 * 15 14 13 17 17 N 1.34782 * 119.99944 * 5.75487 * 15 14 13 18 18 C 1.39803 * 120.00007 * 185.05516 * 17 15 14 19 19 C 1.38962 * 120.04471 * 213.16591 * 18 17 15 20 20 C 1.38112 * 120.03842 * 179.97438 * 19 18 17 21 21 C 1.38224 * 120.12536 * 359.74547 * 20 19 18 22 22 C 1.38775 * 120.09127 * 0.50555 * 21 20 19 23 23 O 1.35899 * 120.01924 * 179.77045 * 22 21 20 24 24 C 1.38620 * 119.95963 * 359.49883 * 22 21 20 25 25 H 0.97003 * 119.99611 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.06040 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.71824 * 179.71829 * 11 10 9 28 28 H 1.08005 * 119.65714 * 179.97438 * 12 11 10 29 29 H 1.08000 * 119.95474 * 180.02562 * 13 12 11 30 30 H 0.96995 * 119.99970 * 5.05430 * 17 15 14 31 31 H 1.08003 * 119.98194 * 359.95583 * 19 18 17 32 32 H 1.07997 * 119.93677 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.95607 * 180.26011 * 21 20 19 34 34 H 0.96702 * 113.99907 * 269.72559 * 23 22 21 35 35 H 1.08004 * 120.06045 * 180.22927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0466 -1.4001 5 1 1.4377 2.6527 0.7001 6 1 3.5378 1.4402 0.7000 7 6 2.0077 -1.2148 -0.0005 8 1 3.0773 -1.2209 0.1489 9 6 1.3169 -2.4269 -0.1960 10 6 0.1951 -2.4766 -1.0440 11 6 -0.4764 -3.6640 -1.2236 12 6 -0.0535 -4.8189 -0.5793 13 6 1.0492 -4.7983 0.2535 14 6 1.7494 -3.6118 0.4555 15 6 2.9257 -3.5847 1.3431 16 8 3.4704 -2.5277 1.5989 17 7 3.3978 -4.7313 1.8714 18 6 4.4461 -4.6955 2.7956 19 6 5.3741 -5.7291 2.8354 20 6 6.4101 -5.6934 3.7481 21 6 6.5298 -4.6278 4.6203 22 6 5.6030 -3.5953 4.5887 23 8 5.7195 -2.5506 5.4500 24 6 4.5618 -3.6274 3.6742 25 1 -0.4850 0.8401 0.0004 26 1 -0.1414 -1.5832 -1.5489 27 1 -1.3398 -3.6980 -1.8714 28 1 -0.5918 -5.7429 -0.7305 29 1 1.3682 -5.7037 0.7484 30 1 3.0101 -5.5812 1.6104 31 1 5.2850 -6.5610 2.1524 32 1 7.1306 -6.4973 3.7773 33 1 7.3433 -4.6006 5.3301 34 1 5.2507 -2.6763 6.2864 35 1 3.8418 -2.8229 3.6457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:00 Heat of formation + Delta-G solvation = -29.048533 kcal Electronic energy + Delta-G solvation = -21131.020012 eV Core-core repulsion = 17865.850326 eV Total energy + Delta-G solvation = -3265.169685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09808 -38.70718 -37.16056 -36.25318 -34.14511 -33.53132 -30.52969 -29.83857 -29.64119 -28.53007 -25.54116 -23.27779 -22.45821 -21.69152 -20.84408 -19.48209 -18.52760 -17.48222 -16.51283 -16.24437 -15.86634 -15.36138 -15.15473 -14.47896 -14.31047 -14.07393 -13.90194 -13.37104 -13.06416 -12.76443 -12.34451 -12.33208 -12.07207 -11.65654 -11.45270 -11.19244 -11.10787 -10.76051 -10.67505 -10.47011 -10.11204 -9.90343 -9.76628 -9.34219 -8.66300 -8.40278 -7.82112 -7.63182 -7.44802 -6.88651 -4.48397 1.39599 1.54697 2.26679 2.74423 3.07583 3.13798 3.21492 3.66850 3.72666 3.93404 4.09413 4.43262 4.60551 5.05278 5.31555 5.34736 5.52976 5.68007 5.75965 5.84917 5.91037 6.14810 6.21629 6.43900 6.49990 6.63066 6.64916 6.74900 6.86769 7.02540 7.11448 7.29018 7.36771 7.52608 7.77669 7.82319 7.88076 8.07825 8.15857 8.56695 8.72481 8.79557 9.17254 10.05927 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.005795 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.455375 B = 4830.441646 C = 6388.754386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.107 0.893 9 C 0.146 3.854 10 C -0.145 4.145 11 C -0.095 4.095 12 C -0.243 4.243 13 C -0.056 4.056 14 C -0.267 4.267 15 C 0.560 3.440 16 O -0.514 6.514 17 N -0.689 5.689 18 C 0.189 3.811 19 C -0.170 4.170 20 C -0.086 4.086 21 C -0.179 4.179 22 C 0.122 3.878 23 O -0.498 6.498 24 C -0.152 4.152 25 H 0.284 0.716 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.404 0.596 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.387 0.613 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -8.358 5.743 11.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.441 4.441 8 H 0.124 0.876 9 C 0.142 3.858 10 C -0.164 4.164 11 C -0.114 4.114 12 C -0.263 4.263 13 C -0.075 4.075 14 C -0.272 4.272 15 C 0.356 3.644 16 O -0.391 6.391 17 N -0.335 5.335 18 C 0.092 3.908 19 C -0.191 4.191 20 C -0.104 4.104 21 C -0.198 4.198 22 C 0.077 3.923 23 O -0.307 6.307 24 C -0.173 4.173 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.241 0.759 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.242 0.758 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.976 -7.132 5.430 10.773 hybrid contribution -0.337 0.042 0.293 0.448 sum 5.639 -7.090 5.723 10.715 Atomic orbital electron populations 1.69710 1.07817 1.29828 1.33905 1.26150 0.94813 1.01926 0.92038 0.86160 0.80974 0.79601 0.79343 1.19189 1.20170 1.17910 1.20249 0.97475 0.89485 1.36875 0.87551 1.17463 0.90079 0.91198 0.87067 1.21379 0.98257 0.96459 1.00302 1.20823 0.98199 0.93539 0.98792 1.20289 1.01575 0.97452 1.06946 1.20638 0.95178 0.95033 0.96648 1.19295 1.02069 0.96475 1.09391 1.18639 0.83953 0.82134 0.79649 1.90721 1.58614 1.29370 1.60368 1.43865 1.35064 1.11101 1.43423 1.17644 0.88996 0.94953 0.89192 1.20908 0.95527 1.00568 1.02138 1.20691 0.97217 0.97637 0.94882 1.21243 1.01174 0.94550 1.02863 1.18286 0.94259 0.87157 0.92565 1.84839 1.75861 1.39927 1.30120 1.21556 1.00111 1.00099 0.95556 0.90525 0.86331 0.88934 0.88949 0.89216 0.75924 0.85796 0.85722 0.85950 0.75796 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.04 11.12 55.56 0.62 -19.42 16 2 C 0.07 1.77 5.26 -17.30 -0.09 1.68 16 3 Si 0.92 19.52 29.57 -169.99 -5.03 14.49 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.41 -11.17 7.70 -37.82 -0.29 -11.46 16 8 H 0.11 3.00 5.88 -52.48 -0.31 2.69 16 9 C 0.15 3.84 5.51 -106.54 -0.59 3.25 16 10 C -0.14 -3.59 8.62 -38.89 -0.34 -3.92 16 11 C -0.09 -2.07 10.01 -39.59 -0.40 -2.47 16 12 C -0.24 -5.00 10.03 -39.37 -0.39 -5.39 16 13 C -0.06 -1.16 9.50 -39.22 -0.37 -1.53 16 14 C -0.27 -6.36 5.92 -104.37 -0.62 -6.98 16 15 C 0.56 12.77 7.46 -12.54 -0.09 12.67 16 16 O -0.51 -13.33 11.24 5.25 0.06 -13.27 16 17 N -0.69 -12.40 5.27 -10.86 -0.06 -12.46 16 18 C 0.19 3.23 6.28 -83.75 -0.53 2.71 16 19 C -0.17 -2.35 9.96 -39.36 -0.39 -2.74 16 20 C -0.09 -1.05 10.03 -39.63 -0.40 -1.45 16 21 C -0.18 -2.37 9.98 -39.39 -0.39 -2.77 16 22 C 0.12 1.92 6.70 -39.24 -0.26 1.66 16 23 O -0.50 -7.20 13.50 -19.42 -0.26 -7.46 16 24 C -0.15 -2.78 8.59 -39.24 -0.34 -3.12 16 25 H 0.28 6.55 8.29 -40.82 -0.34 6.22 16 26 H 0.12 3.00 6.57 -52.49 -0.34 2.66 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.09 1.49 6.48 -52.49 -0.34 1.15 16 30 H 0.40 6.02 6.92 -40.82 -0.28 5.73 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.39 3.47 9.06 45.56 0.41 3.88 16 35 H 0.15 3.06 6.39 -52.48 -0.34 2.72 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -30.79 303.47 -8.03 -38.82 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -2.45 Total: 14.59 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -5.49 Total: -19.85 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.56 Total: -31.88 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.20 Total: -20.73 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.79 -8.03 -38.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.770 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds