Wall clock time and date at job start Tue Mar 31 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47280 * 2 1 4 4 C 1.36935 * 119.99902 * 274.78999 * 3 2 1 5 5 H 1.08002 * 120.00302 * 16.37341 * 4 3 2 6 6 C 1.38815 * 120.00524 * 196.37144 * 4 3 2 7 7 N 1.31625 * 119.99388 * 6.14643 * 6 4 3 8 8 Si 1.86788 * 120.00513 * 186.15047 * 6 4 3 9 9 H 1.48501 * 109.47525 * 59.99689 * 8 6 4 10 10 H 1.48496 * 109.47341 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47175 * 299.99701 * 8 6 4 12 12 C 1.46499 * 120.00283 * 94.79352 * 3 2 1 13 13 C 1.50700 * 109.47227 * 89.99628 * 12 3 2 14 14 O 1.21282 * 120.00102 * 0.02562 * 13 12 3 15 15 N 1.34768 * 120.00073 * 179.97438 * 13 12 3 16 16 C 1.39452 * 120.00194 * 175.55114 * 15 13 12 17 17 C 1.39029 * 119.68764 * 185.35490 * 16 15 13 18 18 C 1.38354 * 119.11875 * 180.02562 * 17 16 15 19 19 C 1.38929 * 118.48262 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 120.35551 * 179.97438 * 19 18 17 21 21 C 1.38177 * 119.28718 * 359.97438 * 19 18 17 22 22 N 1.31941 * 120.82965 * 359.72901 * 21 19 18 23 23 H 1.09001 * 109.47177 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46928 * 300.00320 * 1 2 3 25 25 H 1.09004 * 109.47133 * 60.00108 * 1 2 3 26 26 H 1.09003 * 109.46928 * 239.99680 * 2 1 3 27 27 H 1.09004 * 109.47133 * 119.99892 * 2 1 3 28 28 H 0.97002 * 119.99627 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46462 * 330.00048 * 12 3 2 30 30 H 1.08995 * 109.47271 * 210.00300 * 12 3 2 31 31 H 0.97005 * 120.00218 * 355.28186 * 15 13 12 32 32 H 1.08006 * 120.43674 * 359.97438 * 17 16 15 33 33 H 1.07999 * 120.75600 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.58887 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1532 2.0597 -1.1818 5 1 1.6643 1.6947 -2.0729 6 6 2.9183 3.2168 -1.2345 7 7 3.6115 3.5958 -0.1817 8 14 2.9640 4.2359 -2.7992 9 1 1.5918 4.6978 -3.1294 10 1 3.8469 5.4128 -2.5978 11 1 3.4891 3.4076 -3.9143 12 6 2.3625 2.0365 1.2642 13 6 3.8153 1.7892 1.5791 14 8 4.4964 1.1307 0.8217 15 7 4.3581 2.3005 2.7017 16 6 5.6759 1.9953 3.0406 17 6 6.1940 2.4337 4.2540 18 6 7.5031 2.1247 4.5782 19 6 8.2528 1.3846 3.6726 20 17 9.9004 0.9702 4.0295 21 6 7.6730 0.9819 2.4847 22 7 6.4200 1.2871 2.2063 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1465 4.4041 -0.2187 29 1 1.7432 1.6306 2.0641 30 1 2.1869 3.1087 1.1773 31 1 3.8333 2.8839 3.2720 32 1 5.5828 3.0085 4.9342 33 1 7.9322 2.4514 5.5138 34 1 8.2516 0.4067 1.7770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:14 Heat of formation + Delta-G solvation = 39.096482 kcal Electronic energy + Delta-G solvation = -20048.737001 eV Core-core repulsion = 16816.382207 eV Total energy + Delta-G solvation = -3232.354794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21147 -38.13765 -36.44172 -35.54052 -33.72545 -32.17226 -31.89241 -29.84220 -28.93952 -26.67291 -23.92942 -23.58995 -22.66133 -20.68436 -19.51459 -17.80576 -16.76571 -16.27837 -16.26146 -15.30678 -14.98137 -14.46992 -14.22697 -13.78175 -13.62555 -13.18851 -13.03777 -12.69207 -12.45634 -12.35448 -11.95257 -11.65407 -11.28587 -11.12130 -10.94119 -10.83008 -10.49139 -10.26277 -9.93532 -9.85800 -9.71346 -9.66360 -9.34843 -8.73167 -8.13346 -7.66728 -6.88680 -5.82518 -3.19694 1.27743 1.45031 2.24922 3.38832 3.44454 3.44954 3.64436 3.87107 4.40898 4.56359 4.73562 4.90831 5.12594 5.21114 5.41263 5.43591 5.76436 5.89268 5.96789 6.06045 6.22159 6.26792 6.31095 6.50966 6.56726 6.62742 6.82810 7.08288 7.22125 7.31606 7.70316 7.95413 8.28759 8.61036 9.15318 9.62295 9.81031 10.22500 11.26130 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.004624 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.459538 B = 6054.159888 C = 6700.877218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.576 5.576 4 C -0.236 4.236 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.917 5.917 8 Si 0.918 3.082 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.171 3.829 13 C 0.514 3.486 14 O -0.464 6.464 15 N -0.665 5.665 16 C 0.392 3.608 17 C -0.220 4.220 18 C -0.038 4.038 19 C -0.147 4.147 20 Cl -0.078 7.078 21 C 0.154 3.846 22 N -0.457 5.457 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.254 0.746 29 H 0.032 0.968 30 H 0.116 0.884 31 H 0.406 0.594 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -1.929 11.712 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 N -0.296 5.296 4 C -0.365 4.365 5 H 0.093 0.907 6 C -0.198 4.198 7 N -0.565 5.565 8 Si 0.748 3.252 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.211 1.211 12 C 0.040 3.960 13 C 0.300 3.700 14 O -0.330 6.330 15 N -0.311 5.311 16 C 0.158 3.842 17 C -0.244 4.244 18 C -0.065 4.065 19 C -0.178 4.178 20 Cl -0.050 7.050 21 C -0.007 4.007 22 N -0.172 5.172 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.133 0.867 31 H 0.241 0.759 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.581 -2.618 10.223 11.144 hybrid contribution 0.673 1.308 0.318 1.505 sum 4.255 -1.310 10.542 11.443 Atomic orbital electron populations 1.22311 0.99476 0.99177 1.01455 1.20762 0.91834 0.86331 0.99320 1.43809 1.73933 1.09158 1.02656 1.19262 1.24199 1.04647 0.88409 0.90651 1.24811 0.97342 0.99811 0.97799 1.69553 1.32695 1.25514 1.28722 0.86112 0.77134 0.79348 0.82574 1.21207 1.21764 1.21129 1.20725 0.87574 1.01061 0.86645 1.22719 0.92724 0.76925 0.77629 1.90616 1.62025 1.36825 1.43518 1.44661 1.08996 1.49906 1.27507 1.18982 0.86929 0.89701 0.88549 1.21474 0.96681 1.07965 0.98294 1.21118 0.92794 0.94214 0.98327 1.21846 0.87664 1.08808 0.99529 1.98329 1.18980 1.92806 1.94898 1.22742 0.90504 0.94594 0.92844 1.68093 1.04497 1.14143 1.30509 0.94254 0.93716 0.92928 0.93681 0.94483 0.93488 0.95017 0.86662 0.75881 0.84355 0.84344 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.21 37.16 0.38 -2.49 16 2 C 0.14 3.02 6.39 -4.04 -0.03 2.99 16 3 N -0.58 -14.06 2.03 -174.61 -0.35 -14.41 16 4 C -0.24 -6.34 9.75 -15.06 -0.15 -6.49 16 5 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 6 C 0.00 -0.05 5.25 -17.43 -0.09 -0.14 16 7 N -0.92 -25.12 8.24 55.49 0.46 -24.66 16 8 Si 0.92 22.01 29.56 -169.99 -5.02 16.99 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.17 3.81 5.41 -5.19 -0.03 3.78 16 13 C 0.51 11.88 5.72 -10.99 -0.06 11.82 16 14 O -0.46 -12.85 14.41 5.56 0.08 -12.77 16 15 N -0.67 -12.33 5.39 -11.42 -0.06 -12.39 16 16 C 0.39 7.16 7.42 -154.67 -1.15 6.01 16 17 C -0.22 -3.02 9.94 -39.25 -0.39 -3.41 16 18 C -0.04 -0.49 9.97 -39.28 -0.39 -0.88 16 19 C -0.15 -2.09 6.34 -39.35 -0.25 -2.34 16 20 Cl -0.08 -0.96 28.99 -51.86 -1.50 -2.46 16 21 C 0.15 2.60 10.97 -17.53 -0.19 2.41 16 22 N -0.46 -9.46 7.89 -12.33 -0.10 -9.56 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.12 2.73 6.25 -51.93 -0.32 2.40 16 31 H 0.41 5.85 8.70 -40.82 -0.36 5.50 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -32.52 309.09 -8.21 -40.73 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.02 Total: 2.62 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -2.35 Total: 11.26 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.06 Total: -61.02 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.52 -8.21 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.828 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds