Wall clock time and date at job start Tue Mar 31 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47322 * 2 1 4 4 C 1.50696 * 109.47204 * 119.99799 * 2 1 3 5 5 O 1.21283 * 119.99932 * 120.00382 * 4 2 1 6 6 N 1.34776 * 120.00247 * 300.00387 * 4 2 1 7 7 C 1.39450 * 119.99844 * 184.87465 * 6 4 2 8 8 C 1.39033 * 119.67946 * 174.15509 * 7 6 4 9 9 C 1.38359 * 119.11166 * 180.02562 * 8 7 6 10 10 C 1.38929 * 118.49003 * 0.24363 * 9 8 7 11 11 Cl 1.73591 * 120.36213 * 179.75287 * 10 9 8 12 12 C 1.38186 * 119.27820 * 359.49031 * 10 9 8 13 13 N 1.31937 * 120.83244 * 0.52313 * 12 10 9 14 14 N 1.46497 * 109.47341 * 240.00438 * 2 1 3 15 15 C 1.46505 * 119.99768 * 299.99937 * 14 2 1 16 16 C 1.36939 * 120.00636 * 120.00075 * 14 2 1 17 17 H 1.08000 * 119.99548 * 23.83917 * 16 14 2 18 18 C 1.38811 * 120.00167 * 203.84676 * 16 14 2 19 19 N 1.31618 * 120.00120 * 10.08206 * 18 16 14 20 20 Si 1.86805 * 119.99898 * 190.08238 * 18 16 14 21 21 H 1.48502 * 109.46703 * 60.00016 * 20 18 16 22 22 H 1.48493 * 109.46955 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46894 * 299.99826 * 20 18 16 24 24 H 1.09005 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47359 * 300.00005 * 1 2 3 26 26 H 1.09004 * 109.47395 * 60.00426 * 1 2 3 27 27 H 0.96995 * 119.99651 * 4.87661 * 6 4 2 28 28 H 1.07991 * 120.44398 * 0.02562 * 8 7 6 29 29 H 1.08004 * 120.75419 * 179.97438 * 9 8 7 30 30 H 1.08004 * 119.58409 * 180.24921 * 12 10 9 31 31 H 1.08997 * 109.47066 * 87.66933 * 15 14 2 32 32 H 1.09002 * 109.47069 * 207.66647 * 15 14 2 33 33 H 1.09001 * 109.46844 * 327.66314 * 15 14 2 34 34 H 0.96997 * 119.99824 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.2531 -0.8448 3.5913 8 6 2.0103 -0.2900 4.8428 9 6 2.5587 -0.8896 5.9627 10 6 3.3390 -2.0261 5.7909 11 17 4.0560 -2.8136 7.1618 12 6 3.5338 -2.5260 4.5175 13 7 2.9976 -1.9320 3.4685 14 7 2.0183 -0.6905 -1.1962 15 6 1.6644 -2.0931 -1.4281 16 6 2.8056 -0.0250 -2.0976 17 1 3.3794 0.8340 -1.7825 18 6 2.8661 -0.4544 -3.4162 19 7 2.0246 -1.3689 -3.8498 20 14 4.1417 0.2657 -4.5754 21 1 5.5020 -0.0081 -4.0462 22 1 3.9986 -0.3556 -5.9165 23 1 3.9390 1.7327 -4.6848 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.0923 0.4952 2.5448 28 1 1.4020 0.5969 4.9395 29 1 2.3876 -0.4808 6.9477 30 1 4.1362 -3.4116 4.3786 31 1 0.7164 -2.1449 -1.9634 32 1 2.4435 -2.5710 -2.0220 33 1 1.5701 -2.6070 -0.4714 34 1 2.0672 -1.6692 -4.7711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972683.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:35 Heat of formation + Delta-G solvation = 38.508700 kcal Electronic energy + Delta-G solvation = -19757.306221 eV Core-core repulsion = 16524.925938 eV Total energy + Delta-G solvation = -3232.380282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73291 -38.94304 -36.73614 -35.53169 -34.48050 -32.55659 -32.14491 -30.06520 -28.82959 -25.95607 -24.61836 -24.00053 -23.26077 -21.47671 -19.51902 -18.10575 -16.99028 -16.75598 -16.56725 -15.63087 -15.12557 -14.92947 -14.52989 -14.05207 -13.82504 -13.44907 -13.34957 -12.76455 -12.72439 -12.45505 -12.18933 -11.72743 -11.38985 -11.30396 -10.90433 -10.81499 -10.68321 -10.39388 -10.24555 -10.06399 -10.00916 -9.90651 -9.70683 -8.83756 -8.48511 -8.16908 -6.78425 -5.74612 -3.21661 0.87231 1.08825 1.95289 3.04535 3.14352 3.39472 3.44751 3.46270 3.80291 4.33102 4.48576 4.60176 4.75572 4.80256 5.25413 5.37067 5.44063 5.46286 5.64534 5.73832 5.85270 5.92330 6.08640 6.16282 6.44489 6.72263 6.78018 7.04063 7.32129 7.54976 7.72520 7.85751 8.04701 8.37772 8.72869 9.21110 9.81293 10.29930 11.30734 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.003631 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.721222 B = 7709.151709 C = 8067.141854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.092 0.908 4 C 0.476 3.524 5 O -0.450 6.450 6 N -0.667 5.667 7 C 0.377 3.623 8 C -0.208 4.208 9 C -0.038 4.038 10 C -0.136 4.136 11 Cl -0.068 7.068 12 C 0.154 3.846 13 N -0.462 5.462 14 N -0.570 5.570 15 C 0.165 3.835 16 C -0.263 4.263 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.903 5.903 20 Si 0.909 3.091 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.414 0.586 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.164 0.836 31 H 0.016 0.984 32 H 0.055 0.945 33 H 0.008 0.992 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 2.882 19.929 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.110 0.890 4 C 0.260 3.740 5 O -0.315 6.315 6 N -0.315 5.315 7 C 0.145 3.855 8 C -0.232 4.232 9 C -0.064 4.064 10 C -0.167 4.167 11 Cl -0.040 7.040 12 C -0.006 4.006 13 N -0.177 5.177 14 N -0.289 5.289 15 C 0.021 3.979 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.739 3.261 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.250 0.750 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.182 0.818 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.736 1.661 18.685 18.838 hybrid contribution 0.273 0.993 0.445 1.122 sum -1.463 2.654 19.130 19.368 Atomic orbital electron populations 1.22253 0.96085 1.02017 1.01167 1.20257 0.93522 0.96035 0.85459 0.89015 1.23476 0.80678 0.85890 0.83989 1.90748 1.32674 1.23137 1.84938 1.44533 1.46852 1.35656 1.04465 1.18895 0.90459 0.89464 0.86690 1.21496 1.06878 1.03813 0.91003 1.21209 0.93123 0.92589 0.99482 1.21924 1.05339 0.99441 0.90005 1.98354 1.82564 1.79964 1.43081 1.22764 0.94658 0.97918 0.85267 1.67987 1.10072 1.08210 1.31394 1.43662 1.57530 1.08628 1.19095 1.20803 0.99266 0.82792 0.95054 1.19161 1.19286 1.12046 0.88700 0.91501 1.25009 0.98380 0.99039 0.96672 1.70078 1.36356 1.32515 1.15746 0.86275 0.81401 0.78493 0.79971 1.20954 1.21527 1.20849 0.92727 0.93854 0.91094 0.74958 0.83909 0.83833 0.81848 0.96527 0.92629 0.97378 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.09 37.15 0.34 -2.21 16 2 C 0.16 3.18 3.14 -69.09 -0.22 2.96 16 3 H 0.09 1.68 7.87 -51.93 -0.41 1.27 16 4 C 0.48 9.12 6.87 -10.99 -0.08 9.05 16 5 O -0.45 -10.66 12.73 5.55 0.07 -10.59 16 6 N -0.67 -9.45 5.31 -11.42 -0.06 -9.51 16 7 C 0.38 5.43 7.42 -154.68 -1.15 4.28 16 8 C -0.21 -2.13 9.94 -39.24 -0.39 -2.52 16 9 C -0.04 -0.36 9.97 -39.28 -0.39 -0.75 16 10 C -0.14 -1.53 6.34 -39.34 -0.25 -1.78 16 11 Cl -0.07 -0.67 28.99 -51.86 -1.50 -2.18 16 12 C 0.15 2.10 10.97 -17.53 -0.19 1.90 16 13 N -0.46 -7.83 7.89 -12.33 -0.10 -7.93 16 14 N -0.57 -14.53 2.58 -174.81 -0.45 -14.98 16 15 C 0.17 4.34 7.63 59.85 0.46 4.80 16 16 C -0.26 -7.26 9.59 -15.06 -0.14 -7.41 16 17 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.01 0.22 5.11 -17.43 -0.09 0.13 16 19 N -0.90 -26.45 10.65 55.49 0.59 -25.86 16 20 Si 0.91 21.97 29.57 -169.99 -5.03 16.95 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 25 H 0.04 0.51 7.46 -51.93 -0.39 0.12 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.41 4.06 7.99 -40.82 -0.33 3.74 16 28 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 31 H 0.02 0.45 7.75 -51.93 -0.40 0.04 16 32 H 0.05 1.61 6.80 -51.93 -0.35 1.26 16 33 H 0.01 0.20 6.21 -51.93 -0.32 -0.12 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -33.98 305.31 -7.81 -41.80 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.84 Total: -0.74 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.10 Total: 8.45 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.02 Total: -58.28 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.98 -7.81 -41.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972683.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.305 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds