Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47041 * 270.00111 * 3 2 1 5 5 H 1.48499 * 109.46889 * 30.00256 * 3 2 1 6 6 H 1.48500 * 109.46665 * 150.00149 * 3 2 1 7 7 C 1.37874 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00164 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46851 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47033 * 180.02562 * 11 10 9 13 13 S 1.65602 * 120.00385 * 164.99948 * 12 11 10 14 14 O 1.42105 * 104.27475 * 308.92881 * 13 12 11 15 15 O 1.42091 * 104.27856 * 181.07383 * 13 12 11 16 16 C 1.81396 * 104.44582 * 64.99785 * 13 12 11 17 17 C 1.50707 * 109.47003 * 180.02562 * 16 13 12 18 18 C 1.38238 * 119.99792 * 90.00226 * 17 16 13 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.98162 * 17 16 13 23 23 H 0.96993 * 120.00390 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46695 * 60.00256 * 9 7 2 25 25 H 1.08994 * 109.47435 * 300.00312 * 9 7 2 26 26 H 1.08994 * 109.46922 * 60.00520 * 10 9 7 27 27 H 1.08998 * 109.47027 * 300.00137 * 10 9 7 28 28 H 1.09004 * 109.47020 * 60.00423 * 11 10 9 29 29 H 1.08998 * 109.47257 * 299.99801 * 11 10 9 30 30 H 0.97006 * 120.00065 * 345.00070 * 12 11 10 31 31 H 1.09005 * 109.47589 * 60.00672 * 16 13 12 32 32 H 1.09000 * 109.47576 * 299.99830 * 16 13 12 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 16 7.6220 -4.3364 -0.3727 14 8 7.8396 -3.6500 -1.5978 15 8 7.7210 -5.7520 -0.2985 16 6 8.5665 -3.5610 0.9679 17 6 10.0393 -3.7847 0.7393 18 6 10.7717 -2.8699 0.0060 19 6 12.1226 -3.0748 -0.2032 20 6 12.7414 -4.1941 0.3214 21 6 12.0079 -5.1116 1.0502 22 6 10.6579 -4.9043 1.2634 23 1 -0.4850 0.8399 0.0004 24 1 3.8751 -0.6804 0.8889 25 1 3.8746 -0.6800 -0.8910 26 1 3.6580 -3.1505 -0.8907 27 1 3.6585 -3.1501 0.8892 28 1 5.9149 -2.1226 0.8891 29 1 5.9149 -2.1227 -0.8909 30 1 5.4366 -4.7455 0.2157 31 1 8.2752 -4.0031 1.9207 32 1 8.3605 -2.4908 0.9857 33 1 10.2883 -1.9952 -0.4036 34 1 12.6947 -2.3604 -0.7765 35 1 13.7970 -4.3539 0.1583 36 1 12.4904 -5.9883 1.4564 37 1 10.0859 -5.6186 1.8369 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -63.433560 kcal Electronic energy + Delta-G solvation = -19354.775462 eV Core-core repulsion = 16223.558681 eV Total energy + Delta-G solvation = -3131.216781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59628 -37.17650 -36.18124 -35.93331 -33.39024 -33.24269 -31.26435 -31.20258 -27.70189 -26.83577 -22.98076 -22.84804 -22.01178 -20.50645 -19.28639 -17.63360 -17.28243 -16.94619 -16.36468 -16.20751 -15.56022 -15.40220 -14.78667 -14.65307 -14.08040 -13.77936 -13.66111 -13.14894 -13.00738 -12.91114 -12.47742 -12.33412 -12.13870 -12.01674 -11.74560 -11.72394 -11.38653 -11.24585 -11.16243 -10.95476 -10.13448 -9.88752 -9.73693 -9.44005 -9.29082 -9.25144 -8.97847 -8.57799 -6.07956 -4.06844 0.03099 1.02524 1.03677 2.70057 3.28475 3.35929 3.37607 3.39300 3.65338 3.99915 4.11336 4.41513 4.49705 4.65213 4.77239 4.81070 5.10077 5.11781 5.19622 5.23524 5.25636 5.47408 5.59984 5.67373 5.72676 5.89446 6.07159 6.12092 6.14965 6.38262 6.54247 6.59669 6.74175 7.03622 7.19893 7.32962 7.73713 8.48940 8.96533 9.53822 11.05430 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.030415 B = 0.003297 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.369792 B = 8491.667338 C = 9051.206234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.108 4.108 11 C 0.106 3.894 12 N -1.116 6.116 13 S 2.610 3.390 14 O -0.949 6.949 15 O -0.959 6.959 16 C -0.590 4.590 17 C -0.091 4.091 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.106 4.106 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.015 0.985 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.418 0.582 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.759 -7.870 3.605 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.147 4.147 11 C -0.019 4.019 12 N -0.877 5.877 13 S 2.702 3.298 14 O -0.939 6.939 15 O -0.949 6.949 16 C -0.716 4.716 17 C -0.092 4.092 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.125 4.125 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.253 0.747 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 25.001 -8.065 2.815 26.420 hybrid contribution 0.005 1.074 0.814 1.348 sum 25.006 -6.991 3.629 26.217 Atomic orbital electron populations 1.69909 1.06334 1.26963 1.50954 1.25042 0.94751 0.99237 0.94515 0.86767 0.80282 0.83562 0.78591 1.20198 1.21405 1.18996 1.21103 0.89331 0.94551 1.51057 0.90964 1.19560 0.97443 0.91637 0.96598 1.21666 0.90084 1.00781 1.02211 1.21649 0.98926 0.79961 1.01404 1.55592 1.27944 1.15691 1.88450 1.05081 0.73918 0.74562 0.76273 1.93603 1.84898 1.76119 1.39288 1.93583 1.85703 1.28280 1.87318 1.29695 1.04933 1.15583 1.21395 1.18998 0.92406 0.96796 1.01047 1.21243 0.94537 0.99001 0.97656 1.21204 0.94571 0.98022 0.99773 1.21286 1.00173 0.94395 0.97381 1.21188 0.93942 0.99518 0.99021 1.21203 0.95327 0.96755 0.99261 0.92680 0.96363 0.96627 0.91717 0.91917 0.92183 0.90454 0.74713 0.83890 0.83899 0.85005 0.85343 0.85613 0.85399 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.11 -1.95 5.30 -26.73 -0.14 -2.10 16 11 C 0.11 1.51 6.13 -4.04 -0.02 1.49 16 12 N -1.12 -13.89 5.88 -10.61 -0.06 -13.95 16 13 S 2.61 32.90 5.44 -107.50 -0.58 32.32 16 14 O -0.95 -15.16 17.50 -57.54 -1.01 -16.17 16 15 O -0.96 -14.30 18.08 -57.54 -1.04 -15.34 16 16 C -0.59 -5.44 6.20 36.01 0.22 -5.22 16 17 C -0.09 -0.94 5.14 -104.62 -0.54 -1.48 16 18 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.11 -1.02 9.70 -39.58 -0.38 -1.41 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 25 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 30 H 0.42 4.70 8.62 -34.47 -0.30 4.40 16 31 H 0.14 0.99 8.09 -51.92 -0.42 0.57 16 32 H 0.14 1.08 8.08 -51.92 -0.42 0.66 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -35.26 328.83 -9.89 -45.15 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.27 Total: 1.00 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -2.98 Total: -27.73 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.71 Total: -40.71 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -2.05 Total: -31.51 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 32.90 SS G_CDS: -0.58 Total: 32.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.26 -9.89 -45.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.279 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds