Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48497 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47328 * 299.99752 * 3 2 1 6 6 H 1.48501 * 109.47552 * 59.99423 * 3 2 1 7 7 C 1.38990 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99953 * 175.55264 * 7 2 1 9 9 N 1.36795 * 120.00366 * 355.55761 * 7 2 1 10 10 C 1.34773 * 120.00382 * 123.78238 * 9 7 2 11 11 O 1.21843 * 120.00325 * 172.15128 * 10 9 7 12 12 C 1.41264 * 119.99993 * 352.15411 * 10 9 7 13 13 C 1.35828 * 120.00319 * 185.26358 * 12 10 9 14 14 C 1.41493 * 120.00301 * 185.12630 * 13 12 10 15 15 C 1.38047 * 126.11450 * 174.91686 * 14 13 12 16 16 C 1.40280 * 106.52542 * 179.72787 * 15 14 13 17 17 C 1.35181 * 107.21635 * 0.40055 * 16 15 14 18 18 O 1.34040 * 109.04493 * 359.58943 * 17 16 15 19 19 C 1.39658 * 120.00039 * 303.79161 * 9 7 2 20 20 C 1.38999 * 120.07903 * 351.06021 * 19 9 7 21 21 C 1.38069 * 119.92049 * 179.77130 * 20 19 9 22 22 C 1.38316 * 120.07925 * 0.48310 * 21 20 19 23 23 C 1.38317 * 120.16401 * 359.77410 * 22 21 20 24 24 C 1.38079 * 120.07902 * 359.97438 * 23 22 21 25 25 H 0.97007 * 119.99850 * 5.02013 * 1 2 3 26 26 H 1.08005 * 119.99809 * 5.25447 * 12 10 9 27 27 H 1.08000 * 119.99417 * 5.11941 * 13 12 10 28 28 H 1.08005 * 126.72950 * 359.96964 * 15 14 13 29 29 H 1.08004 * 126.39157 * 180.27592 * 16 15 14 30 30 H 1.07993 * 125.47885 * 179.84950 * 17 16 15 31 31 H 1.08005 * 120.04084 * 359.97438 * 20 19 9 32 32 H 1.07993 * 119.96424 * 180.25291 * 21 20 19 33 33 H 1.07998 * 119.91866 * 179.74279 * 22 21 20 34 34 H 1.07994 * 119.95976 * 179.97438 * 23 22 21 35 35 H 1.07999 * 120.03539 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8891 2.3965 -1.2126 6 1 1.8890 2.3966 1.2124 7 6 2.0087 -1.2037 0.0005 8 1 3.0863 -1.2051 -0.0720 9 7 1.3279 -2.3866 0.0928 10 6 1.4886 -3.3323 -0.8538 11 8 0.9974 -4.4369 -0.7011 12 6 2.2265 -3.0430 -2.0232 13 6 2.2990 -3.9581 -3.0243 14 6 3.1249 -3.7145 -4.1471 15 6 3.3694 -4.5932 -5.1833 16 6 4.2330 -3.9336 -6.0704 17 6 4.4837 -2.7113 -5.5503 18 8 3.8139 -2.5812 -4.3966 19 6 0.4660 -2.6142 1.1680 20 6 0.4370 -1.7269 2.2375 21 6 -0.4197 -1.9526 3.2965 22 6 -1.2412 -3.0654 3.2986 23 6 -1.2112 -3.9534 2.2386 24 6 -0.3607 -3.7314 1.1737 25 1 -0.4850 0.8369 -0.0735 26 1 2.7329 -2.0941 -2.1211 27 1 1.7263 -4.8717 -2.9633 28 1 2.9705 -5.5910 -5.2917 29 1 4.6260 -4.3293 -6.9953 30 1 5.1180 -1.9590 -5.9951 31 1 1.0814 -0.8601 2.2386 32 1 -0.4458 -1.2614 4.1259 33 1 -1.9073 -3.2416 4.1302 34 1 -1.8537 -4.8214 2.2439 35 1 -0.3376 -4.4255 0.3466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072679970.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = 43.983690 kcal Electronic energy + Delta-G solvation = -21180.062931 eV Core-core repulsion = 17918.060160 eV Total energy + Delta-G solvation = -3262.002771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31238 -39.82245 -37.38157 -35.07789 -33.66605 -32.82528 -31.93911 -29.74410 -29.45850 -27.99351 -25.32284 -23.91795 -21.76446 -21.61358 -21.09849 -19.99611 -18.93144 -17.62736 -17.14805 -16.24020 -15.85914 -15.57194 -15.25632 -14.64650 -14.41738 -14.07259 -13.73582 -13.06086 -13.02395 -12.82350 -12.61145 -12.38647 -12.02933 -11.90446 -11.79487 -11.45654 -11.34076 -11.03473 -10.82698 -10.46573 -10.21204 -10.05820 -9.72828 -9.24795 -8.86659 -8.40703 -7.81778 -7.64760 -6.85316 -6.40146 -4.53791 0.87231 2.26904 2.54447 2.56623 2.99012 3.08935 3.11753 3.14148 3.18673 3.89971 4.26643 4.53327 4.71953 4.98897 5.06598 5.17828 5.26332 5.69915 5.85134 5.86775 5.89034 5.93703 6.08225 6.13755 6.36986 6.41564 6.64707 6.65777 6.74717 6.87024 6.90317 7.11271 7.22113 7.30290 7.47700 7.59509 7.63953 7.76305 8.05124 8.38255 8.80209 9.16700 9.57907 10.44261 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.005605 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.823345 B = 4994.206317 C = 6516.737230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.060 3.940 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.370 5.370 10 C 0.509 3.491 11 O -0.573 6.573 12 C -0.127 4.127 13 C -0.060 4.060 14 C 0.029 3.971 15 C -0.197 4.197 16 C -0.216 4.216 17 C -0.042 4.042 18 O -0.164 6.164 19 C 0.192 3.808 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.173 4.173 23 C -0.117 4.117 24 C -0.177 4.177 25 H 0.276 0.724 26 H 0.140 0.860 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.200 0.800 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -2.551 -5.740 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.501 4.501 8 H 0.113 0.887 9 N -0.076 5.076 10 C 0.305 3.695 11 O -0.461 6.461 12 C -0.147 4.147 13 C -0.081 4.081 14 C -0.021 4.021 15 C -0.216 4.216 16 C -0.235 4.235 17 C -0.111 4.111 18 O -0.059 6.059 19 C 0.095 3.905 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.193 4.193 23 C -0.136 4.136 24 C -0.197 4.197 25 H 0.086 0.914 26 H 0.157 0.843 27 H 0.171 0.829 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.217 0.783 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.671 -2.641 -5.447 7.646 hybrid contribution 0.288 1.129 -0.224 1.186 sum 4.959 -1.512 -5.670 7.683 Atomic orbital electron populations 1.69912 1.06255 1.28706 1.41902 1.25702 0.95376 1.00220 0.93814 0.86023 0.80153 0.81262 0.78422 1.18694 1.20127 1.20060 1.19357 0.91841 0.81760 1.57148 0.88736 1.40918 1.35843 1.14517 1.16287 1.17351 0.82926 0.85009 0.84206 1.90466 1.52246 1.23763 1.79580 1.22391 0.98585 1.00043 0.93685 1.20527 0.96735 1.00622 0.90205 1.20053 0.98801 0.85129 0.98069 1.22199 1.03321 1.01179 0.94944 1.21668 1.03834 0.95566 1.02398 1.24157 1.00570 0.99745 0.86640 1.84164 1.48786 1.36771 1.36158 1.18215 0.91317 0.93485 0.87456 1.20756 1.00198 0.99537 0.92367 1.20728 0.97486 0.97452 0.98133 1.20770 1.02190 0.96928 0.99375 1.20847 0.99121 0.98884 0.94764 1.22328 0.96712 0.99803 1.00858 0.91369 0.84263 0.82900 0.83131 0.83527 0.78302 0.85943 0.87702 0.88075 0.87629 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.80 11.86 55.50 0.66 -21.14 16 2 C 0.06 1.47 3.97 -17.47 -0.07 1.40 16 3 Si 0.92 18.66 29.56 -169.99 -5.02 13.63 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.37 -9.23 6.77 -15.06 -0.10 -9.33 16 8 H 0.10 2.24 7.76 -52.49 -0.41 1.83 16 9 N -0.37 -9.38 2.62 -62.07 -0.16 -9.55 16 10 C 0.51 12.27 7.27 -15.11 -0.11 12.16 16 11 O -0.57 -14.21 12.70 5.06 0.06 -14.14 16 12 C -0.13 -2.64 8.79 -39.30 -0.35 -2.98 16 13 C -0.06 -1.08 9.38 -39.21 -0.37 -1.45 16 14 C 0.03 0.48 6.83 -38.41 -0.26 0.21 16 15 C -0.20 -2.68 10.90 -38.88 -0.42 -3.10 16 16 C -0.22 -2.55 10.87 -39.90 -0.43 -2.98 16 17 C -0.04 -0.51 12.06 29.64 0.36 -0.16 16 18 O -0.16 -2.62 10.20 4.59 0.05 -2.57 16 19 C 0.19 4.86 5.71 -83.73 -0.48 4.38 16 20 C -0.11 -2.58 8.02 -39.36 -0.32 -2.89 16 21 C -0.12 -2.50 10.04 -39.61 -0.40 -2.90 16 22 C -0.17 -3.45 10.04 -39.52 -0.40 -3.85 16 23 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 24 C -0.18 -4.26 8.94 -39.36 -0.35 -4.62 16 25 H 0.28 6.78 8.32 -40.82 -0.34 6.44 16 26 H 0.14 2.90 6.60 -52.48 -0.35 2.56 16 27 H 0.15 2.61 7.49 -52.49 -0.39 2.21 16 28 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.15 1.30 8.06 -52.48 -0.42 0.87 16 30 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.12 2.98 6.18 -52.48 -0.32 2.66 16 32 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.16 4.05 4.81 -54.65 -0.26 3.79 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -29.02 307.38 -7.29 -36.31 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -3.41 Total: 11.80 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -4.09 Total: -18.96 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.50 Total: -30.69 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.11 Total: -16.72 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.02 -7.29 -36.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072679970.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.291 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds