Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47176 * 2 1 4 4 C 1.50702 * 109.47267 * 240.00579 * 2 1 3 5 5 H 1.07996 * 120.00057 * 240.00135 * 4 2 1 6 6 C 1.37879 * 120.00268 * 59.99735 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47063 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47105 * 120.00117 * 8 6 4 11 11 H 1.48505 * 109.46901 * 239.99850 * 8 6 4 12 12 N 1.46895 * 109.47204 * 120.00499 * 2 1 3 13 13 C 1.46897 * 111.00291 * 58.95205 * 12 2 1 14 14 C 1.38519 * 111.00017 * 294.99878 * 12 2 1 15 15 N 1.32582 * 119.55181 * 80.74378 * 14 12 2 16 16 C 1.31628 * 121.78917 * 180.02562 * 15 14 12 17 17 C 1.39559 * 120.67064 * 359.97438 * 16 15 14 18 18 C 1.47535 * 120.47681 * 179.97438 * 17 16 15 19 19 N 1.34770 * 120.00093 * 359.97438 * 18 17 16 20 20 O 1.21590 * 119.99917 * 180.02562 * 18 17 16 21 21 C 1.40345 * 119.04474 * 0.25588 * 17 16 15 22 22 C 1.37957 * 118.37120 * 359.47608 * 21 17 16 23 23 Cl 1.73594 * 120.39033 * 180.28516 * 22 21 17 24 24 H 1.09004 * 109.46876 * 59.99629 * 1 2 3 25 25 H 1.08996 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46765 * 299.99635 * 1 2 3 27 27 H 0.97006 * 119.99603 * 180.02562 * 7 6 4 28 28 H 1.09005 * 109.47195 * 288.75214 * 13 12 2 29 29 H 1.09000 * 109.46604 * 48.74935 * 13 12 2 30 30 H 1.08994 * 109.47514 * 168.74606 * 13 12 2 31 31 H 1.08006 * 119.66467 * 180.02562 * 16 15 14 32 32 H 0.97002 * 120.00343 * 0.02562 * 19 18 17 33 33 H 0.97006 * 120.00155 * 179.72199 * 19 18 17 34 34 H 1.08010 * 120.81480 * 179.72484 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6033 8 14 2.3215 -1.1200 -4.0080 9 1 3.1466 -2.2866 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1869 -4.8165 12 7 2.0197 -0.6926 1.1993 13 6 1.5284 -2.0762 1.2458 14 6 1.6699 -0.0028 2.3485 15 7 0.4479 -0.1365 2.8451 16 6 0.0686 0.4984 3.9339 17 6 0.9508 1.3427 4.6095 18 6 0.5209 2.0527 5.8293 19 7 -0.7318 1.8886 6.2983 20 8 1.2966 2.7866 6.4108 21 6 2.2509 1.5113 4.1086 22 6 2.6084 0.8225 2.9681 23 17 4.2053 0.9865 2.3074 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7089 1.1616 -3.4844 28 1 0.4604 -2.0753 1.4641 29 1 1.7020 -2.5558 0.2826 30 1 2.0581 -2.6239 2.0252 31 1 -0.9354 0.3639 4.3087 32 1 -1.3508 1.3035 5.8342 33 1 -1.0133 2.3523 7.1026 34 1 2.9556 2.1612 4.6062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080760090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = 11.302789 kcal Electronic energy + Delta-G solvation = -20124.453097 eV Core-core repulsion = 16890.893078 eV Total energy + Delta-G solvation = -3233.560019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72968 -39.18577 -36.79257 -36.18237 -33.99824 -32.97493 -32.12513 -30.33408 -28.64004 -25.90409 -25.28088 -23.84465 -22.96316 -21.07828 -19.92119 -18.32284 -17.43182 -16.48658 -16.12208 -16.08206 -15.33718 -15.20857 -14.85847 -14.09697 -14.04747 -13.47567 -13.38704 -12.93445 -12.70020 -12.24591 -11.72424 -11.42696 -11.27032 -10.93748 -10.84126 -10.73427 -10.66503 -10.50991 -10.17973 -10.10654 -9.93515 -9.60811 -9.49623 -8.90438 -8.67980 -8.44947 -7.63827 -6.09206 -4.14073 0.61576 1.17689 2.39429 2.75837 3.26727 3.32442 3.34940 3.38936 3.78333 4.11950 4.39392 4.52383 4.72897 4.79442 5.15004 5.23172 5.32391 5.70562 5.84583 6.05684 6.29584 6.36871 6.55046 6.62299 6.80977 6.88544 6.99597 7.08328 7.36163 7.53422 7.71734 7.79930 7.98700 8.05579 8.20206 8.39684 8.89330 9.50555 10.97874 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.004974 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.525395 B = 5628.399411 C = 6089.776381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.221 3.779 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.485 5.485 13 C 0.033 3.967 14 C 0.365 3.635 15 N -0.496 5.496 16 C 0.151 3.849 17 C -0.217 4.217 18 C 0.578 3.422 19 N -0.851 5.851 20 O -0.543 6.543 21 C -0.005 4.005 22 C -0.084 4.084 23 Cl -0.030 7.030 24 H 0.087 0.913 25 H 0.034 0.966 26 H 0.019 0.981 27 H 0.261 0.739 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.156 0.844 32 H 0.401 0.599 33 H 0.405 0.595 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -0.604 13.825 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.119 3.881 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.206 5.206 13 C -0.114 4.114 14 C 0.135 3.865 15 N -0.209 5.209 16 C -0.011 4.011 17 C -0.223 4.223 18 C 0.364 3.636 19 N -0.415 5.415 20 O -0.420 6.420 21 C -0.032 4.032 22 C -0.116 4.116 23 Cl -0.001 7.001 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.173 0.827 32 H 0.231 0.769 33 H 0.236 0.764 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.410 -0.630 13.330 13.561 hybrid contribution -0.388 0.112 -0.359 0.540 sum -2.798 -0.518 12.971 13.279 Atomic orbital electron populations 1.22405 0.99174 1.00100 1.00909 1.19443 0.90751 0.94423 0.83526 0.94002 1.21043 1.31185 1.12795 0.89113 0.91448 1.24902 0.95039 0.95066 0.99026 1.69904 1.36666 1.22862 1.23555 0.86407 0.78541 0.79652 0.82633 1.19610 1.21096 1.20996 1.60452 1.56853 1.03133 1.00175 1.22288 0.98587 0.87908 1.02609 1.20375 0.85581 0.88522 0.91977 1.68257 1.16470 1.24270 1.11868 1.22827 0.98572 0.90082 0.89637 1.20637 0.96449 1.05294 0.99940 1.17898 0.81817 0.80399 0.83531 1.43707 1.13993 1.51694 1.32144 1.90822 1.53037 1.38537 1.59645 1.21470 0.95139 0.94468 0.92117 1.21586 0.90028 1.02942 0.97004 1.98380 1.19875 1.96552 1.85272 0.89412 0.94687 0.96200 0.92878 0.93732 0.89426 0.93756 0.82655 0.76901 0.76385 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.08 37.16 0.30 -3.64 16 2 C 0.22 5.39 2.31 -68.86 -0.16 5.23 16 3 H 0.04 1.15 8.11 -51.93 -0.42 0.72 16 4 C -0.50 -13.16 7.78 -34.44 -0.27 -13.42 16 5 H 0.07 1.76 6.83 -52.49 -0.36 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.48 -10.18 4.11 -174.76 -0.72 -10.90 16 13 C 0.03 0.64 8.51 60.06 0.51 1.15 16 14 C 0.37 6.90 5.12 -155.20 -0.79 6.11 16 15 N -0.50 -8.44 7.06 -12.12 -0.09 -8.53 16 16 C 0.15 1.98 10.70 -17.15 -0.18 1.80 16 17 C -0.22 -2.94 5.89 -104.82 -0.62 -3.55 16 18 C 0.58 7.20 8.04 -12.47 -0.10 7.10 16 19 N -0.85 -6.52 8.83 30.46 0.27 -6.25 16 20 O -0.54 -8.68 17.25 5.29 0.09 -8.59 16 21 C -0.01 -0.08 9.50 -38.89 -0.37 -0.45 16 22 C -0.08 -1.46 6.35 -39.22 -0.25 -1.71 16 23 Cl -0.03 -0.52 28.46 -51.86 -1.48 -1.99 16 24 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 25 H 0.03 0.80 6.65 -51.93 -0.35 0.45 16 26 H 0.02 0.43 6.16 -51.93 -0.32 0.11 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.04 0.84 6.12 -51.93 -0.32 0.52 16 29 H 0.09 1.76 6.26 -51.93 -0.32 1.43 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.16 1.35 6.40 -52.48 -0.34 1.02 16 32 H 0.40 2.03 6.88 -40.82 -0.28 1.75 16 33 H 0.41 2.44 8.93 -40.82 -0.36 2.07 16 34 H 0.15 2.15 7.73 -52.48 -0.41 1.75 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -30.73 298.06 -7.19 -37.92 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.35 Total: 2.06 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.02 Total: 0.13 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.09 Total: -49.73 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -1.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.73 -7.19 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.222 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds