Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48497 * 109.47273 * 274.98161 * 3 2 1 5 5 H 1.48503 * 109.46871 * 34.98383 * 3 2 1 6 6 H 1.48504 * 109.47009 * 154.97851 * 3 2 1 7 7 C 1.39834 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99625 * 153.02246 * 7 2 1 9 9 C 1.41097 * 120.00118 * 333.02532 * 7 2 1 10 10 C 1.40903 * 120.15050 * 159.21626 * 9 7 2 11 11 C 1.36298 * 119.83942 * 180.02562 * 10 9 7 12 12 C 1.39626 * 120.15956 * 0.02562 * 11 10 9 13 13 N 1.38750 * 119.84883 * 179.97438 * 12 11 10 14 14 C 1.39758 * 119.99980 * 147.67084 * 13 12 11 15 15 C 1.38959 * 120.01155 * 159.58810 * 14 13 12 16 16 C 1.38140 * 120.05917 * 179.79917 * 15 14 13 17 17 C 1.38586 * 120.12768 * 0.44597 * 16 15 14 18 18 C 1.39313 * 119.96240 * 359.54734 * 17 16 15 19 19 C 1.38462 * 119.90469 * 0.23353 * 18 17 16 20 20 O 1.36507 * 108.64346 * 180.24554 * 18 17 16 21 21 C 1.43981 * 105.49841 * 342.69793 * 20 18 17 22 22 O 1.36603 * 131.43144 * 179.85328 * 17 16 15 23 23 C 1.39621 * 120.30199 * 0.25112 * 12 11 10 24 24 C 1.36300 * 120.16078 * 359.48625 * 23 12 11 25 25 H 0.97002 * 120.00238 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.08326 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.92216 * 179.97438 * 11 10 9 28 28 H 0.96998 * 120.00008 * 327.67396 * 13 12 11 29 29 H 1.08001 * 119.96901 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.93608 * 180.31236 * 16 15 14 31 31 H 1.07993 * 120.01905 * 180.02562 * 19 18 17 32 32 H 1.08993 * 110.57349 * 268.59479 * 21 20 18 33 33 H 1.08999 * 110.57428 * 145.72204 * 21 20 18 34 34 H 1.08000 * 119.91796 * 179.74741 * 23 12 11 35 35 H 1.08003 * 120.08433 * 180.25380 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 2.3855 2.1072 -1.3947 5 1 1.4973 2.6199 0.8028 6 1 3.5894 1.4120 0.5922 7 6 2.0083 -1.2110 -0.0005 8 1 3.0001 -1.2617 -0.4249 9 6 1.4179 -2.3667 0.5532 10 6 1.8847 -3.6447 0.1870 11 6 1.3095 -4.7569 0.7254 12 6 0.2596 -4.6320 1.6374 13 7 -0.3217 -5.7685 2.1811 14 6 -0.8298 -5.7390 3.4827 15 6 -1.7649 -6.6847 3.8854 16 6 -2.2647 -6.6590 5.1730 17 6 -1.8422 -5.6851 6.0638 18 6 -0.9046 -4.7356 5.6635 19 6 -0.4004 -4.7642 4.3743 20 8 -0.6535 -3.9005 6.7138 21 6 -1.7463 -4.0961 7.6306 22 8 -2.1781 -5.4440 7.3657 23 6 -0.2118 -3.3689 2.0003 24 6 0.3577 -2.2481 1.4738 25 1 -0.4850 0.8400 0.0004 26 1 2.6959 -3.7429 -0.5193 27 1 1.6660 -5.7371 0.4453 28 1 -0.3754 -6.5835 1.6579 29 1 -2.0986 -7.4427 3.1921 30 1 -2.9876 -7.3980 5.4853 31 1 0.3268 -4.0293 4.0621 32 1 -2.5499 -3.3892 7.4250 33 1 -1.4039 -3.9992 8.6609 34 1 -1.0269 -3.2796 2.7032 35 1 -0.0052 -1.2716 1.7585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082715645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -7.097635 kcal Electronic energy + Delta-G solvation = -20953.890627 eV Core-core repulsion = 17689.672804 eV Total energy + Delta-G solvation = -3264.217823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83700 -39.00241 -37.20519 -35.99836 -34.74958 -33.10615 -30.39951 -29.64181 -29.44780 -27.92357 -25.65714 -24.61640 -22.82386 -22.18703 -21.07699 -20.37211 -18.01119 -17.57843 -17.39970 -17.23175 -16.39741 -15.79182 -15.22183 -14.90897 -14.28195 -14.05281 -13.71156 -13.50380 -13.43448 -12.93193 -12.73206 -12.60097 -12.51609 -12.09640 -12.03273 -11.67480 -11.21982 -11.18347 -11.05586 -10.70537 -10.62017 -9.93843 -9.68299 -9.41784 -9.06288 -8.39138 -7.72223 -7.65300 -6.97873 -6.54008 -4.29293 1.47681 1.57475 2.68781 2.96385 2.97206 3.03282 3.06931 3.18611 3.63328 3.86238 3.95254 4.08289 4.48825 4.79490 4.83593 4.99288 5.29309 5.35994 5.48394 5.59966 5.83049 6.07447 6.10473 6.17399 6.36728 6.46080 6.50292 6.64384 6.81209 6.89193 6.97520 7.12985 7.30751 7.45718 7.48771 7.67105 7.94105 8.07449 8.23775 8.37912 8.53475 8.79078 8.90285 10.02567 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.004298 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.019457 B = 6512.737613 C = 7492.700608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.102 3.898 10 C -0.214 4.214 11 C -0.106 4.106 12 C 0.004 3.996 13 N -0.660 5.660 14 C 0.231 3.769 15 C -0.195 4.195 16 C -0.055 4.055 17 C -0.044 4.044 18 C 0.075 3.925 19 C -0.164 4.164 20 O -0.311 6.311 21 C 0.214 3.786 22 O -0.317 6.317 23 C -0.114 4.114 24 C -0.156 4.156 25 H 0.283 0.717 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.399 0.601 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -6.977 8.436 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.100 3.900 10 C -0.234 4.234 11 C -0.126 4.126 12 C -0.090 4.090 13 N -0.280 5.280 14 C 0.126 3.874 15 C -0.218 4.218 16 C -0.075 4.075 17 C -0.089 4.089 18 C 0.030 3.970 19 C -0.187 4.187 20 O -0.227 6.227 21 C 0.102 3.898 22 O -0.234 6.234 23 C -0.135 4.135 24 C -0.176 4.176 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.234 0.766 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.077 -6.645 8.576 11.590 hybrid contribution 0.181 0.668 -0.075 0.696 sum -3.895 -5.978 8.501 11.098 Atomic orbital electron populations 1.69920 1.07879 1.29724 1.32525 1.25938 0.94521 1.01548 0.91898 0.86417 0.81221 0.80732 0.79172 1.19478 1.19884 1.18177 1.19514 1.02295 0.92752 1.34179 0.90157 1.17596 0.90917 0.91913 0.89622 1.20487 1.04999 0.92237 1.05660 1.20036 0.95519 0.97310 0.99785 1.17089 1.00543 0.85410 1.05948 1.41590 1.62627 1.13041 1.10706 1.17362 0.91796 0.93387 0.84880 1.20339 1.01422 1.03588 0.96452 1.19616 0.99862 0.97242 0.90747 1.19484 1.03038 1.01595 0.84805 1.19452 0.96827 0.91452 0.89267 1.19844 1.05986 1.04384 0.88461 1.87346 1.45087 1.61222 1.29015 1.25480 0.86492 0.82516 0.95299 1.87284 1.80038 1.31199 1.24835 1.20364 0.99612 0.91806 1.01689 1.20829 1.00412 0.96908 0.99437 0.90612 0.88650 0.89144 0.76626 0.85080 0.85367 0.83647 0.90471 0.85839 0.88725 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.48 11.29 55.54 0.63 -18.85 16 2 C 0.08 1.98 4.94 -17.34 -0.09 1.89 16 3 Si 0.90 18.02 29.63 -169.99 -5.04 12.98 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.78 8.98 -37.90 -0.34 -12.12 16 8 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 9 C 0.10 2.63 5.59 -106.79 -0.60 2.04 16 10 C -0.21 -5.02 9.74 -39.27 -0.38 -5.40 16 11 C -0.11 -2.25 9.89 -39.76 -0.39 -2.64 16 12 C 0.00 0.08 5.97 -83.70 -0.50 -0.42 16 13 N -0.66 -11.36 5.43 -8.29 -0.05 -11.41 16 14 C 0.23 3.87 6.18 -83.73 -0.52 3.35 16 15 C -0.19 -2.73 9.92 -39.35 -0.39 -3.12 16 16 C -0.06 -0.77 10.05 -39.49 -0.40 -1.16 16 17 C -0.04 -0.70 7.15 -39.05 -0.28 -0.98 16 18 C 0.08 1.30 7.14 -39.10 -0.28 1.02 16 19 C -0.16 -3.00 7.78 -39.25 -0.31 -3.30 16 20 O -0.31 -5.09 11.40 -45.71 -0.52 -5.61 16 21 C 0.21 2.62 8.89 101.05 0.90 3.52 16 22 O -0.32 -4.65 11.41 -46.03 -0.53 -5.18 16 23 C -0.11 -2.61 7.46 -39.76 -0.30 -2.90 16 24 C -0.16 -3.93 8.70 -39.27 -0.34 -4.27 16 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.40 5.72 8.86 -40.82 -0.36 5.36 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.15 2.94 5.93 -52.49 -0.31 2.63 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 2.08 6.40 -52.49 -0.34 1.74 16 35 H 0.11 2.99 6.22 -52.48 -0.33 2.67 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -28.03 301.07 -8.60 -36.63 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -3.42 Total: 11.41 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -4.21 Total: -24.51 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.58 Total: -30.26 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.05 Total: -10.79 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.04 Total: 12.98 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.03 -8.60 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -28.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds