Wall clock time and date at job start Tue Mar 31 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46932 * 2 1 4 4 C 1.36939 * 119.99508 * 274.97428 * 3 2 1 5 5 H 1.07995 * 120.00440 * 23.87582 * 4 3 2 6 6 C 1.38820 * 119.99616 * 203.87016 * 4 3 2 7 7 N 1.31621 * 119.99990 * 5.06508 * 6 4 3 8 8 Si 1.86801 * 119.99737 * 185.05908 * 6 4 3 9 9 H 1.48495 * 109.46952 * 60.00761 * 8 6 4 10 10 H 1.48503 * 109.46781 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47425 * 300.00357 * 8 6 4 12 12 C 1.46497 * 120.00079 * 94.97338 * 3 2 1 13 13 C 1.50704 * 109.46898 * 90.00055 * 12 3 2 14 14 O 1.21288 * 119.99839 * 0.02562 * 13 12 3 15 15 N 1.34772 * 120.00144 * 180.02562 * 13 12 3 16 16 C 1.40000 * 120.00387 * 185.91726 * 15 13 12 17 17 C 1.39208 * 120.49250 * 24.35119 * 16 15 13 18 18 C 1.38556 * 118.37500 * 180.24628 * 17 16 15 19 19 C 1.38225 * 119.26356 * 359.45965 * 18 17 16 20 20 N 1.31893 * 120.92835 * 0.28120 * 19 18 17 21 21 C 1.31890 * 121.78096 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 119.68352 * 179.97438 * 21 20 19 23 23 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47382 * 300.00058 * 1 2 3 25 25 H 1.09001 * 109.47304 * 60.00280 * 1 2 3 26 26 H 1.08998 * 109.47382 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.47304 * 119.99720 * 2 1 3 28 28 H 0.96998 * 119.99939 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47374 * 329.99991 * 12 3 2 30 30 H 1.09001 * 109.47069 * 209.99484 * 12 3 2 31 31 H 0.97000 * 119.99736 * 5.90875 * 15 13 12 32 32 H 1.07991 * 120.80789 * 359.97438 * 17 16 15 33 33 H 1.07999 * 120.36740 * 179.73123 * 18 17 16 34 34 H 1.07995 * 119.53287 * 180.24944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1495 2.0610 -1.1815 5 1 1.5639 1.7688 -2.0406 6 6 3.0353 3.1258 -1.2749 7 7 3.8208 3.4193 -0.2605 8 14 3.1124 4.1418 -2.8406 9 1 1.7851 4.7558 -3.0980 10 1 4.1315 5.2111 -2.6870 11 1 3.4825 3.2661 -3.9813 12 6 2.3661 2.0352 1.2639 13 6 3.8200 1.7877 1.5741 14 8 4.4988 1.1301 0.8139 15 7 4.3658 2.2969 2.6961 16 6 5.7417 2.1735 2.9237 17 6 6.6219 2.0085 1.8579 18 6 7.9742 1.8856 2.1337 19 6 8.4039 1.9416 3.4463 20 7 7.5454 2.1044 4.4343 21 6 6.2498 2.2204 4.2167 22 17 5.1683 2.4321 5.5581 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.4400 4.1631 -0.3259 29 1 1.7493 1.6286 2.0652 30 1 2.1904 3.1076 1.1786 31 1 3.8054 2.7491 3.3461 32 1 6.2591 1.9726 0.8414 33 1 8.6850 1.7519 1.3317 34 1 9.4574 1.8504 3.6659 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121005604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:17 Heat of formation + Delta-G solvation = 27.378247 kcal Electronic energy + Delta-G solvation = -20377.043373 eV Core-core repulsion = 17144.180438 eV Total energy + Delta-G solvation = -3232.862935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22171 -38.35185 -36.41314 -35.74232 -33.97452 -31.94194 -31.73289 -29.98377 -28.98207 -26.66003 -23.91344 -23.45715 -22.74713 -20.73535 -19.54836 -17.74171 -17.00585 -16.47582 -16.24049 -15.46614 -14.98742 -14.33491 -14.24901 -13.88721 -13.73767 -13.33746 -12.96950 -12.74762 -12.41524 -12.07189 -11.76793 -11.53759 -11.38106 -11.12408 -11.05679 -10.89198 -10.68758 -10.42613 -10.21123 -9.97018 -9.88050 -9.55353 -9.18877 -8.82772 -8.41543 -7.62602 -6.88651 -5.94677 -3.34467 1.24121 1.58866 2.06099 3.32691 3.37835 3.38743 3.70159 3.85901 4.23714 4.46578 4.82971 5.10062 5.28473 5.32481 5.38592 5.43706 5.63606 5.92765 6.10544 6.19810 6.26462 6.34020 6.50152 6.52939 6.60837 6.77023 6.78858 6.96714 7.07813 7.30138 7.66022 7.98113 8.15275 8.30237 9.06630 9.43389 9.71071 10.16776 11.16483 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.005948 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.014194 B = 4706.248717 C = 5540.582715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.574 5.574 4 C -0.243 4.243 5 H 0.073 0.927 6 C 0.005 3.995 7 N -0.913 5.913 8 Si 0.917 3.083 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.284 1.284 12 C 0.175 3.825 13 C 0.535 3.465 14 O -0.507 6.507 15 N -0.678 5.678 16 C 0.161 3.839 17 C -0.080 4.080 18 C -0.148 4.148 19 C 0.068 3.932 20 N -0.463 5.463 21 C 0.114 3.886 22 Cl -0.046 7.046 23 H 0.039 0.961 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.256 0.744 29 H 0.037 0.963 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.176 0.824 33 H 0.137 0.863 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -1.577 7.561 8.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 N -0.294 5.294 4 C -0.372 4.372 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.560 5.560 8 Si 0.748 3.252 9 H -0.211 1.211 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.044 3.956 13 C 0.323 3.677 14 O -0.378 6.378 15 N -0.322 5.322 16 C 0.058 3.942 17 C -0.108 4.108 18 C -0.169 4.169 19 C -0.091 4.091 20 N -0.173 5.173 21 C -0.053 4.053 22 Cl -0.018 7.018 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.237 0.763 32 H 0.193 0.807 33 H 0.155 0.845 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.829 -1.884 7.842 8.546 hybrid contribution -0.253 0.950 -1.161 1.521 sum 2.576 -0.933 6.681 7.221 Atomic orbital electron populations 1.22308 0.99480 0.99254 1.01425 1.20787 0.91803 0.86338 0.99348 1.43716 1.74239 1.09017 1.02407 1.19193 1.17360 1.10567 0.90127 0.90882 1.24933 0.96003 1.00461 0.97792 1.69322 1.25515 1.30595 1.30521 0.86128 0.77135 0.79338 0.82627 1.21121 1.21706 1.21053 1.20428 0.87848 1.00042 0.87252 1.22416 0.92865 0.75407 0.76997 1.90443 1.62789 1.39133 1.45455 1.44313 1.04328 1.58506 1.25076 1.18539 0.86829 0.97439 0.91374 1.22188 0.91378 0.95888 1.01341 1.22169 0.96382 1.00270 0.98031 1.22349 0.98482 1.00272 0.88031 1.66767 1.01282 1.12197 1.37079 1.21247 0.90097 1.08055 0.85912 1.98353 1.61095 1.95660 1.46694 0.94204 0.93717 0.92960 0.93556 0.94490 0.93257 0.94502 0.88084 0.76273 0.80702 0.84489 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.21 37.16 0.38 -2.42 16 2 C 0.14 2.90 6.39 -4.04 -0.03 2.88 16 3 N -0.57 -13.44 2.03 -174.61 -0.35 -13.79 16 4 C -0.24 -6.25 9.68 -15.06 -0.15 -6.40 16 5 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 6 C 0.00 0.12 5.22 -17.43 -0.09 0.03 16 7 N -0.91 -23.74 8.00 55.49 0.44 -23.30 16 8 Si 0.92 21.08 29.56 -169.99 -5.02 16.06 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.18 3.77 5.41 -5.19 -0.03 3.74 16 13 C 0.53 11.75 5.42 -10.99 -0.06 11.69 16 14 O -0.51 -12.86 12.82 5.55 0.07 -12.79 16 15 N -0.68 -12.67 5.20 -9.73 -0.05 -12.72 16 16 C 0.16 3.00 6.45 -83.48 -0.54 2.46 16 17 C -0.08 -1.51 8.83 -39.10 -0.35 -1.85 16 18 C -0.15 -2.25 10.10 -39.47 -0.40 -2.65 16 19 C 0.07 0.98 11.18 -17.53 -0.20 0.78 16 20 N -0.46 -7.71 10.33 -10.21 -0.11 -7.82 16 21 C 0.11 1.96 7.29 -17.24 -0.13 1.84 16 22 Cl -0.05 -0.68 27.94 -51.86 -1.45 -2.13 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 27 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 28 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.10 2.31 6.81 -51.93 -0.35 1.96 16 31 H 0.40 6.49 7.76 -40.82 -0.32 6.17 16 32 H 0.18 3.91 5.89 -52.49 -0.31 3.60 16 33 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -28.99 304.71 -7.35 -36.34 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.90 Total: 5.45 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.58 Total: 10.10 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.07 Total: -57.62 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.45 Total: -2.13 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.99 -7.35 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121005604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.719 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds