Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47123 * 2 1 4 4 H 1.09004 * 109.47290 * 55.00336 * 3 2 1 5 5 C 1.50700 * 109.47185 * 174.99953 * 3 2 1 6 6 H 1.08003 * 120.00273 * 120.27558 * 5 3 2 7 7 C 1.37876 * 120.00127 * 300.00389 * 5 3 2 8 8 N 1.31515 * 120.00163 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00198 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47264 * 59.99576 * 9 7 5 11 11 H 1.48500 * 109.47357 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46978 * 299.99909 * 9 7 5 13 13 N 1.46501 * 109.47240 * 295.00200 * 3 2 1 14 14 C 1.34773 * 120.00005 * 84.99880 * 13 3 2 15 15 O 1.21584 * 120.00227 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99761 * 179.97438 * 14 13 3 17 17 C 1.40035 * 119.99997 * 175.32540 * 16 14 13 18 18 C 1.39289 * 120.46737 * 34.96487 * 17 16 14 19 19 C 1.38465 * 118.37808 * 179.97438 * 18 17 16 20 20 C 1.38425 * 119.21965 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.55795 * 180.02562 * 20 19 18 22 22 N 1.31931 * 120.88380 * 0.02562 * 20 19 18 23 23 C 1.31853 * 121.78004 * 359.72251 * 22 20 19 24 24 H 1.08997 * 109.47279 * 59.99969 * 1 2 3 25 25 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47078 * 299.99519 * 1 2 3 27 27 H 1.09000 * 109.46977 * 239.99836 * 2 1 3 28 28 H 1.09008 * 109.46824 * 120.00024 * 2 1 3 29 29 H 0.97001 * 120.00488 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99853 * 265.00255 * 13 3 2 31 31 H 0.97005 * 120.00198 * 355.33299 * 16 14 13 32 32 H 1.08000 * 120.81584 * 359.95408 * 18 17 16 33 33 H 1.07999 * 120.39510 * 179.97438 * 19 18 17 34 34 H 1.08007 * 119.66606 * 180.28918 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1470 1.8928 -0.6501 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8799 1.3811 10 1 6.5005 2.2798 1.3807 11 1 6.3979 0.2166 2.6503 12 1 6.5966 0.1451 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6326 -0.4317 16 7 0.0788 3.2674 -2.5183 17 6 -1.2191 3.7700 -2.6730 18 6 -1.8954 4.3249 -1.5891 19 6 -3.1767 4.8094 -1.7909 20 6 -3.7391 4.7276 -3.0532 21 17 -5.3447 5.3330 -3.3162 22 7 -3.0711 4.1959 -4.0589 23 6 -1.8475 3.7278 -3.9097 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 3.8293 -0.0606 2.9502 30 1 2.2718 2.1231 -1.9978 31 1 0.7213 3.3531 -3.2400 32 1 -1.4319 4.3758 -0.6150 33 1 -3.7309 5.2460 -0.9732 34 1 -1.3303 3.3036 -4.7578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155867231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -2.328985 kcal Electronic energy + Delta-G solvation = -19637.461335 eV Core-core repulsion = 16403.310198 eV Total energy + Delta-G solvation = -3234.151137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77955 -39.28075 -36.74090 -35.70691 -34.45240 -32.69974 -32.18715 -31.08360 -29.42665 -26.94844 -24.04117 -23.63967 -22.81479 -20.86899 -19.67227 -18.54632 -17.70766 -17.22300 -16.47479 -16.00842 -15.19927 -15.01947 -14.48344 -14.41311 -14.20108 -13.54647 -13.21323 -12.79484 -12.74229 -12.35525 -11.85852 -11.63582 -11.39813 -11.32637 -11.06456 -10.90530 -10.57898 -10.42064 -10.27327 -9.96858 -9.85070 -9.65199 -9.33189 -9.14087 -8.58993 -8.30275 -7.90439 -6.20230 -4.30347 0.83566 1.14832 1.76449 2.93516 3.20289 3.26470 3.27484 3.42534 3.78119 4.24638 4.37837 4.68786 4.78025 4.88321 5.09105 5.12280 5.44251 5.73301 6.03518 6.17109 6.33352 6.39682 6.57663 6.72595 6.84949 7.01097 7.21966 7.25592 7.32617 7.55737 7.60072 7.75173 7.84965 8.09438 8.59384 8.71298 9.06344 9.37419 10.84994 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.043033 B = 0.003316 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.512210 B = 8440.898587 C = 8620.640585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.714 5.714 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.691 5.691 17 C 0.140 3.860 18 C -0.069 4.069 19 C -0.131 4.131 20 C 0.143 3.857 21 Cl -0.042 7.042 22 N -0.460 5.460 23 C 0.082 3.918 24 H 0.037 0.963 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.266 0.734 30 H 0.387 0.613 31 H 0.407 0.593 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 7.133 -10.090 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.364 5.364 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.339 5.339 17 C 0.040 3.960 18 C -0.097 4.097 19 C -0.152 4.152 20 C -0.022 4.022 21 Cl -0.014 7.014 22 N -0.171 5.171 23 C -0.079 4.079 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.220 0.780 31 H 0.242 0.758 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.855 6.918 -9.789 15.518 hybrid contribution 1.838 0.004 0.116 1.842 sum -8.017 6.922 -9.673 14.344 Atomic orbital electron populations 1.21817 0.98265 0.98045 1.01176 1.21965 0.92671 0.99784 1.02368 1.18762 0.94111 0.88937 0.79702 0.93120 1.21165 0.90539 1.39351 1.06557 0.92092 1.24872 0.98687 0.94705 0.95301 1.69876 1.35319 1.37310 1.09285 0.86495 0.84669 0.78338 0.77522 1.20173 1.21083 1.20136 1.45871 1.13017 1.58066 1.19484 1.16122 0.83849 0.78724 0.82038 1.90892 1.51794 1.64740 1.37829 1.42828 1.11256 1.61071 1.18766 1.18648 0.86523 0.95514 0.95323 1.21918 0.93856 0.93112 1.00814 1.21789 0.95922 1.01180 0.96326 1.21489 0.89191 1.00880 0.90647 1.98383 1.20308 1.85489 1.97242 1.66885 1.07542 1.09578 1.33048 1.22397 0.89663 0.99433 0.96370 0.94427 0.95885 0.93115 0.95002 0.88159 0.92382 0.78031 0.75753 0.81760 0.83640 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -2.99 5.45 -26.74 -0.15 -3.14 16 3 C 0.29 6.75 2.24 -69.09 -0.15 6.59 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.42 8.73 -34.44 -0.30 -13.72 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.75 11.29 55.43 0.63 -23.13 16 9 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.71 -13.35 5.03 -59.82 -0.30 -13.65 16 14 C 0.69 12.35 6.99 -86.92 -0.61 11.74 16 15 O -0.58 -12.12 10.95 5.29 0.06 -12.06 16 16 N -0.69 -9.07 5.36 -14.12 -0.08 -9.15 16 17 C 0.14 1.85 6.32 -83.51 -0.53 1.32 16 18 C -0.07 -0.96 8.81 -39.11 -0.34 -1.30 16 19 C -0.13 -1.61 9.87 -39.43 -0.39 -2.00 16 20 C 0.14 1.85 7.27 -17.44 -0.13 1.72 16 21 Cl -0.04 -0.48 29.10 -51.86 -1.51 -1.99 16 22 N -0.46 -6.16 10.33 -10.21 -0.11 -6.27 16 23 C 0.08 0.98 11.12 -17.34 -0.19 0.79 16 24 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.16 7.84 -51.92 -0.41 0.76 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.59 5.95 -51.92 -0.31 2.29 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 6.12 8.56 -40.82 -0.35 5.77 16 31 H 0.41 3.87 8.84 -40.82 -0.36 3.51 16 32 H 0.17 2.55 6.31 -52.49 -0.33 2.22 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -28.95 302.71 -8.01 -36.96 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -3.68 Total: 8.88 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.57 Total: 1.04 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.14 Total: -52.19 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.06 Total: -12.06 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.51 Total: -1.99 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.95 -8.01 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155867231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.633 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds