Wall clock time and date at job start Tue Mar 31 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99942 * 2 1 4 4 C 1.38211 * 120.00320 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.99453 * 359.76186 * 4 3 2 6 6 C 1.38209 * 120.00114 * 0.46737 * 5 4 3 7 7 C 1.50691 * 120.00023 * 179.78842 * 6 5 4 8 8 S 1.81400 * 109.47338 * 269.72507 * 7 6 5 9 9 O 1.42094 * 110.54441 * 68.37381 * 8 7 6 10 10 O 1.42108 * 110.53881 * 291.62561 * 8 7 6 11 11 N 1.65597 * 104.45372 * 180.02562 * 8 7 6 12 12 C 1.46507 * 120.00197 * 64.99677 * 11 8 7 13 13 H 1.09000 * 109.46936 * 335.00510 * 12 11 8 14 14 C 1.53000 * 109.46892 * 95.00082 * 12 11 8 15 15 C 1.50692 * 109.46939 * 215.00413 * 12 11 8 16 16 H 1.07994 * 120.00577 * 354.36766 * 15 12 11 17 17 C 1.37882 * 119.99721 * 174.37059 * 15 12 11 18 18 N 1.31516 * 120.00154 * 156.61681 * 17 15 12 19 19 Si 1.86797 * 119.99900 * 336.88813 * 17 15 12 20 20 H 1.48498 * 109.47455 * 179.72674 * 19 17 15 21 21 H 1.48499 * 109.47225 * 299.72808 * 19 17 15 22 22 H 1.48496 * 109.47392 * 59.72743 * 19 17 15 23 23 C 1.38213 * 120.00135 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47223 * 270.02601 * 1 2 3 25 25 H 1.08999 * 109.47204 * 30.02352 * 1 2 3 26 26 H 1.09001 * 109.47252 * 150.02878 * 1 2 3 27 27 H 1.07998 * 119.99951 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00439 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.99789 * 180.25539 * 5 4 3 30 30 H 1.09006 * 109.47514 * 149.72656 * 7 6 5 31 31 H 1.09000 * 109.47713 * 29.72658 * 7 6 5 32 32 H 0.96996 * 120.00123 * 245.00137 * 11 8 7 33 33 H 1.08997 * 109.46527 * 173.07667 * 14 12 11 34 34 H 1.08996 * 109.47340 * 293.07719 * 14 12 11 35 35 H 1.09000 * 109.46855 * 53.07882 * 14 12 11 36 36 H 0.96997 * 120.00039 * 355.20663 * 18 17 15 37 37 H 1.08006 * 119.99710 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5807 -1.1969 -0.0009 7 6 4.3341 -2.5020 -0.0009 8 16 4.6353 -3.0264 -1.7111 9 8 5.5580 -2.1517 -2.3457 10 8 3.4155 -3.3887 -2.3437 11 7 5.4596 -4.4553 -1.5662 12 6 4.8051 -5.6211 -0.9671 13 1 4.0091 -5.2884 -0.3009 14 6 4.2121 -6.4970 -2.0725 15 6 5.8163 -6.4173 -0.1833 16 1 6.8598 -6.1403 -0.2099 17 6 5.4093 -7.4996 0.5678 18 7 6.2662 -8.4508 0.8688 19 14 3.6388 -7.6186 1.1514 20 1 3.4568 -8.8708 1.9286 21 1 3.3220 -6.4510 2.0126 22 1 2.7300 -7.6284 -0.0229 23 6 2.1981 -1.1969 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1327 -0.0010 29 1 5.3517 0.0000 0.0077 30 1 3.7454 -3.2615 0.5137 31 1 5.2869 -2.3715 0.5123 32 1 6.3758 -4.5204 -1.8778 33 1 3.8339 -7.4228 -1.6389 34 1 3.3957 -5.9640 -2.5598 35 1 4.9842 -6.7283 -2.8063 36 1 7.1651 -8.4266 0.5051 37 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171092906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:47 Heat of formation + Delta-G solvation = -62.848512 kcal Electronic energy + Delta-G solvation = -20312.290871 eV Core-core repulsion = 17181.099460 eV Total energy + Delta-G solvation = -3131.191411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54660 -36.73040 -35.70709 -35.46275 -33.76403 -32.35803 -32.12733 -28.97123 -27.70514 -26.86237 -24.81217 -22.31086 -21.03509 -20.78313 -18.93029 -17.98692 -16.89612 -16.64501 -15.97291 -15.87309 -15.34181 -14.90263 -14.39019 -13.89360 -13.53066 -13.41901 -13.18310 -13.03862 -12.79163 -12.45028 -12.31762 -12.22480 -12.15977 -11.71398 -11.59212 -11.56467 -11.35707 -11.13965 -11.11491 -10.79872 -10.49350 -10.19905 -9.87333 -9.37613 -8.91643 -8.76861 -8.49559 -8.36496 -6.63730 -4.25633 0.52612 1.26033 1.32881 3.27605 3.29526 3.33181 3.49887 3.61522 4.08181 4.36017 4.44900 4.49962 4.72390 4.80419 5.01525 5.03056 5.18178 5.21059 5.35051 5.45778 5.51575 5.60119 5.71055 5.93015 5.96517 6.01565 6.32375 6.32757 6.40861 6.45823 6.60841 6.68519 6.86760 7.10424 7.26506 7.61660 7.97109 8.22023 8.73752 9.40895 10.73323 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.005295 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.543801 B = 5286.610211 C = 5803.533605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.593 4.593 8 S 2.606 3.394 9 O -0.972 6.972 10 O -0.956 6.956 11 N -1.096 6.096 12 C 0.253 3.747 13 H 0.026 0.974 14 C -0.165 4.165 15 C -0.621 4.621 16 H 0.066 0.934 17 C 0.043 3.957 18 N -0.889 5.889 19 Si 1.023 2.977 20 H -0.280 1.280 21 H -0.280 1.280 22 H -0.270 1.270 23 C -0.108 4.108 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.412 0.588 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.049 0.951 36 H 0.272 0.728 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 16.110 -0.133 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.133 4.133 5 C -0.132 4.132 6 C -0.081 4.081 7 C -0.719 4.719 8 S 2.698 3.302 9 O -0.962 6.962 10 O -0.946 6.946 11 N -0.856 5.856 12 C 0.147 3.853 13 H 0.043 0.957 14 C -0.224 4.224 15 C -0.659 4.659 16 H 0.084 0.916 17 C -0.165 4.165 18 N -0.521 5.521 19 Si 0.850 3.150 20 H -0.205 1.205 21 H -0.207 1.207 22 H -0.196 1.196 23 C -0.126 4.126 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.588 15.576 0.048 18.291 hybrid contribution 1.706 0.673 -0.162 1.841 sum -7.883 16.249 -0.114 18.060 Atomic orbital electron populations 1.20815 0.90852 1.03106 1.02442 1.19920 0.96341 0.92859 0.99443 1.21096 0.94296 0.97540 1.00785 1.21126 0.94295 0.97871 0.99990 1.21179 1.00469 0.91785 0.99795 1.19058 0.93638 0.92601 1.02757 1.29745 1.09953 1.03852 1.28316 1.05026 0.74670 0.73686 0.76815 1.93535 1.63091 1.66670 1.72921 1.93570 1.47532 1.82105 1.71365 1.55458 1.27210 1.25596 1.77337 1.18768 0.92905 0.82826 0.90753 0.95682 1.22555 0.99600 1.00363 0.99920 1.22077 0.94953 1.15502 1.33414 0.91563 1.25649 1.05465 0.91227 0.94136 1.70842 1.07481 1.29734 1.43994 0.84339 0.76014 0.77054 0.77597 1.20485 1.20651 1.19587 1.21113 0.93171 0.98581 0.99783 0.91043 0.91442 0.91097 0.85836 0.85542 0.85248 0.83853 0.83883 0.75363 0.92255 0.94089 0.93194 0.91772 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.00 0.36 -0.66 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 5 C -0.11 -1.50 9.70 -39.58 -0.38 -1.88 16 6 C -0.08 -1.15 5.14 -104.63 -0.54 -1.69 16 7 C -0.59 -8.92 6.09 36.00 0.22 -8.70 16 8 S 2.61 47.10 5.36 -107.50 -0.58 46.53 16 9 O -0.97 -19.02 18.08 -57.54 -1.04 -20.06 16 10 O -0.96 -19.48 17.25 -57.54 -0.99 -20.48 16 11 N -1.10 -21.46 5.35 -5.88 -0.03 -21.49 16 12 C 0.25 5.68 2.26 -69.08 -0.16 5.53 16 13 H 0.03 0.54 5.73 -51.93 -0.30 0.25 16 14 C -0.16 -3.64 9.24 37.16 0.34 -3.29 16 15 C -0.62 -16.05 8.97 -34.44 -0.31 -16.35 16 16 H 0.07 1.81 8.05 -52.49 -0.42 1.39 16 17 C 0.04 1.17 5.19 -17.82 -0.09 1.08 16 18 N -0.89 -25.60 13.70 55.43 0.76 -24.84 16 19 Si 1.02 23.24 26.44 -169.99 -4.50 18.75 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.72 6.15 56.52 0.35 -5.37 16 23 C -0.11 -1.48 9.36 -39.58 -0.37 -1.85 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.14 2.06 7.39 -51.92 -0.38 1.68 16 31 H 0.14 1.89 8.08 -51.92 -0.42 1.47 16 32 H 0.41 7.64 8.79 -34.47 -0.30 7.34 16 33 H 0.06 1.32 5.47 -51.93 -0.28 1.04 16 34 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.27 7.80 8.73 -40.82 -0.36 7.44 16 37 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -31.87 322.61 -8.92 -40.79 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.09 Total: 8.75 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: -2.32 Total: -32.81 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.73 Total: -46.33 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.03 Total: -40.54 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.50 Total: 18.75 kcal Atomic # 16 Polarization: 47.10 SS G_CDS: -0.58 Total: 46.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.87 -8.92 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.058 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds