Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47256 * 2 1 4 4 C 1.50701 * 109.47437 * 120.00349 * 2 1 3 5 5 H 1.07998 * 120.00009 * 119.99728 * 4 2 1 6 6 C 1.37880 * 119.99802 * 300.00210 * 4 2 1 7 7 N 1.31510 * 119.99696 * 179.97438 * 6 4 2 8 8 Si 1.86791 * 120.00008 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47667 * 90.00105 * 8 6 4 10 10 H 1.48511 * 109.47143 * 209.99992 * 8 6 4 11 11 H 1.48505 * 109.47387 * 329.99646 * 8 6 4 12 12 N 1.46502 * 109.47253 * 240.00476 * 2 1 3 13 13 C 1.46502 * 119.99982 * 299.99933 * 12 2 1 14 14 C 1.34779 * 120.00184 * 119.99507 * 12 2 1 15 15 O 1.21582 * 119.99798 * 0.02562 * 14 12 2 16 16 N 1.34768 * 119.99892 * 179.97438 * 14 12 2 17 17 C 1.39546 * 119.99595 * 174.72355 * 16 14 12 18 18 C 1.39452 * 120.85625 * 327.30217 * 17 16 14 19 19 C 1.37884 * 119.10996 * 179.71130 * 18 17 16 20 20 N 1.32014 * 120.85081 * 0.57162 * 19 18 17 21 21 C 1.32041 * 121.87783 * 359.72434 * 20 19 18 22 22 Cl 1.73602 * 119.60021 * 179.97438 * 21 20 19 23 23 C 1.38133 * 120.80471 * 359.97024 * 21 20 19 24 24 H 1.08997 * 109.47194 * 59.99646 * 1 2 3 25 25 H 1.09008 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47550 * 299.99484 * 1 2 3 27 27 H 0.97001 * 120.00149 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47064 * 90.00004 * 13 12 2 29 29 H 1.08997 * 109.46894 * 209.99445 * 13 12 2 30 30 H 1.09000 * 109.46799 * 330.00227 * 13 12 2 31 31 H 0.96996 * 120.00620 * 354.72695 * 16 14 12 32 32 H 1.08004 * 120.44762 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.57868 * 180.29299 * 19 18 17 34 34 H 1.07997 * 120.47084 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5564 8 14 0.6259 1.2796 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9951 3.9072 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0871 1.1285 -1.8907 16 7 3.2427 -0.6708 -3.1835 17 6 3.9518 0.0352 -4.1562 18 6 3.6687 1.3759 -4.4154 19 6 4.3958 2.0406 -5.3802 20 7 5.3412 1.4209 -6.0622 21 6 5.6352 0.1511 -5.8508 22 17 6.8896 -0.6052 -6.7825 23 6 4.9568 -0.5828 -4.8972 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.9033 -0.5283 4.4375 28 1 0.7375 -2.1442 -1.9995 29 1 2.4628 -2.5816 -1.9866 30 1 1.5295 -2.5968 -0.4710 31 1 3.0735 -1.6189 -3.2994 32 1 2.8934 1.8880 -3.8649 33 1 4.1861 3.0802 -5.5838 34 1 5.2014 -1.6211 -4.7290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181923773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = 20.813911 kcal Electronic energy + Delta-G solvation = -19766.992134 eV Core-core repulsion = 16533.844548 eV Total energy + Delta-G solvation = -3233.147586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89686 -39.46017 -36.81355 -36.10612 -35.03838 -32.93533 -31.27166 -31.05689 -29.81476 -26.50825 -25.25036 -23.90783 -23.70291 -21.50811 -19.58023 -18.49075 -17.58159 -16.78235 -16.27601 -16.05162 -15.74985 -15.09288 -14.85700 -14.55257 -14.22687 -13.98060 -13.44155 -13.04285 -12.77313 -12.33883 -12.24370 -12.04436 -11.87162 -11.71961 -11.44672 -11.31786 -10.94443 -10.80207 -10.29444 -10.02748 -9.72590 -9.55153 -9.41643 -9.11310 -8.72435 -8.69076 -7.92602 -6.23554 -4.25468 0.87908 1.05014 1.65694 2.76164 3.16968 3.31538 3.32139 3.32749 3.70570 4.08921 4.27019 4.40231 4.79559 4.86561 5.07058 5.11046 5.31354 5.39701 5.56088 5.72489 5.89173 6.07161 6.12738 6.19113 6.20545 6.34468 6.62401 6.67236 6.70756 7.16232 7.29908 7.49707 7.66259 8.12972 8.33905 8.74245 8.80879 9.36354 10.88940 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.003772 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.176619 B = 7421.390616 C = 7658.944340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.244 3.756 3 H 0.065 0.935 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.592 5.592 13 C 0.079 3.921 14 C 0.699 3.301 15 O -0.574 6.574 16 N -0.687 5.687 17 C 0.240 3.760 18 C -0.174 4.174 19 C 0.135 3.865 20 N -0.500 5.500 21 C 0.195 3.805 22 Cl -0.037 7.037 23 C -0.196 4.196 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.409 0.591 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -1.516 -17.499 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.326 5.326 13 C -0.064 4.064 14 C 0.401 3.599 15 O -0.450 6.450 16 N -0.336 5.336 17 C 0.134 3.866 18 C -0.197 4.197 19 C -0.021 4.021 20 N -0.214 5.214 21 C 0.030 3.970 22 Cl -0.008 7.008 23 C -0.220 4.220 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.248 0.752 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.758 -0.322 -17.720 17.810 hybrid contribution -0.973 -0.470 0.861 1.382 sum 0.785 -0.792 -16.859 16.896 Atomic orbital electron populations 1.22466 0.98843 1.01226 0.99400 1.19286 0.89914 0.94996 0.81573 0.91686 1.21135 1.33053 1.14492 0.88455 0.90285 1.24851 0.95604 0.96596 0.95560 1.69863 1.44920 1.40099 0.98047 0.86914 0.80383 0.83741 0.77653 1.20319 1.22029 1.18738 1.47235 1.50326 1.11878 1.23143 1.21671 0.98608 0.82733 1.03431 1.15889 0.79572 0.85051 0.79382 1.90904 1.62020 1.15415 1.76701 1.42913 1.57446 1.13220 1.19998 1.17615 0.89484 0.92072 0.87467 1.22355 1.03334 0.94531 0.99460 1.22515 0.89412 0.99734 0.90390 1.67006 1.17736 1.08752 1.27871 1.21180 0.92362 0.90511 0.92943 1.98395 1.50627 1.79173 1.72643 1.21443 0.97549 1.02682 1.00352 0.94749 0.92497 0.92940 0.92293 0.93294 0.93136 0.88825 0.75231 0.82584 0.81522 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.67 37.15 0.32 -2.93 16 2 C 0.24 5.54 2.23 -69.08 -0.15 5.39 16 3 H 0.07 1.65 5.95 -51.93 -0.31 1.34 16 4 C -0.53 -14.06 8.57 -34.44 -0.30 -14.36 16 5 H 0.08 2.24 7.58 -52.49 -0.40 1.84 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 8 Si 0.88 21.03 24.37 -169.99 -4.14 16.88 16 9 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 12 N -0.59 -11.17 2.75 -181.01 -0.50 -11.67 16 13 C 0.08 1.13 9.24 59.85 0.55 1.69 16 14 C 0.70 12.97 8.05 -86.92 -0.70 12.27 16 15 O -0.57 -12.63 13.38 5.29 0.07 -12.55 16 16 N -0.69 -9.55 5.23 -14.07 -0.07 -9.63 16 17 C 0.24 3.28 6.33 -83.49 -0.53 2.75 16 18 C -0.17 -2.40 8.73 -39.26 -0.34 -2.75 16 19 C 0.14 1.67 11.17 -17.60 -0.20 1.47 16 20 N -0.50 -6.77 10.34 -10.45 -0.11 -6.88 16 21 C 0.19 2.49 7.27 -17.50 -0.13 2.36 16 22 Cl -0.04 -0.41 29.10 -51.86 -1.51 -1.92 16 23 C -0.20 -2.34 9.82 -39.22 -0.39 -2.73 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.06 7.67 -51.92 -0.40 0.66 16 26 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.56 6.29 -51.93 -0.33 0.23 16 30 H 0.09 1.51 7.02 -51.93 -0.36 1.14 16 31 H 0.41 4.35 6.51 -40.82 -0.27 4.09 16 32 H 0.16 2.33 6.48 -52.48 -0.34 1.99 16 33 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -31.62 296.65 -6.41 -38.03 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.44 Total: 3.37 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.95 Total: 5.20 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.09 Total: -53.48 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.88 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.62 -6.41 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181923773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.845 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds