Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47131 * 2 1 4 4 C 1.50704 * 109.47110 * 239.99892 * 2 1 3 5 5 H 1.08001 * 120.00406 * 239.99602 * 4 2 1 6 6 C 1.37882 * 119.99722 * 60.00267 * 4 2 1 7 7 N 1.31516 * 120.00137 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99783 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47197 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46998 * 119.99566 * 8 6 4 11 11 H 1.48496 * 109.47433 * 239.99506 * 8 6 4 12 12 N 1.46500 * 109.47511 * 119.99994 * 2 1 3 13 13 C 1.46498 * 119.99567 * 59.99986 * 12 2 1 14 14 C 1.34771 * 120.00321 * 239.99874 * 12 2 1 15 15 O 1.21582 * 119.99573 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00090 * 179.97438 * 14 12 2 17 17 C 1.39545 * 119.99867 * 174.72562 * 16 14 12 18 18 C 1.39454 * 120.84917 * 327.29889 * 17 16 14 19 19 C 1.37892 * 119.10546 * 179.70745 * 18 17 16 20 20 N 1.32012 * 120.85049 * 0.58338 * 19 18 17 21 21 C 1.32054 * 121.87857 * 359.70825 * 20 19 18 22 22 Cl 1.73598 * 119.59929 * 180.02562 * 21 20 19 23 23 C 1.38130 * 120.79961 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47306 * 299.99796 * 1 2 3 26 26 H 1.08996 * 109.47324 * 60.00017 * 1 2 3 27 27 H 0.96993 * 119.99964 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47581 * 90.00382 * 13 12 2 29 29 H 1.09003 * 109.46976 * 210.00007 * 13 12 2 30 30 H 1.08998 * 109.47798 * 329.99806 * 13 12 2 31 31 H 0.96997 * 120.00178 * 354.72041 * 16 14 12 32 32 H 1.07995 * 120.45219 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.57549 * 180.28861 * 19 18 17 34 34 H 1.08005 * 120.46768 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1285 1.8910 16 7 3.2421 -0.6709 3.1839 17 6 4.1327 -0.0291 4.0454 18 6 5.0707 0.8799 3.5568 19 6 5.9295 1.4980 4.4411 20 7 5.8791 1.2303 5.7328 21 6 5.0098 0.3717 6.2337 22 17 4.9951 0.0646 7.9422 23 6 4.1113 -0.2841 5.4148 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7081 1.1609 -3.4844 28 1 2.4157 -2.7377 0.9716 29 1 1.6239 -2.2852 2.5001 30 1 0.6904 -2.3002 0.9846 31 1 2.9461 -1.5741 3.3772 32 1 5.1205 1.1007 2.5009 33 1 6.6557 2.2068 4.0716 34 1 3.4029 -0.9856 5.8302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181923790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = 12.536959 kcal Electronic energy + Delta-G solvation = -19708.730087 eV Core-core repulsion = 16475.223585 eV Total energy + Delta-G solvation = -3233.506502 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79969 -39.34013 -36.76559 -35.91716 -34.92172 -33.00014 -31.11515 -30.82187 -29.09332 -26.40410 -25.30822 -23.80279 -23.60556 -21.35947 -19.50421 -18.41426 -17.39349 -16.45438 -16.36484 -15.93393 -15.49257 -15.00945 -14.66043 -14.45224 -14.21479 -13.88704 -13.33785 -12.88433 -12.73475 -12.17363 -11.87568 -11.71818 -11.65829 -11.42378 -11.15099 -10.99206 -10.85967 -10.73497 -10.34003 -10.26113 -9.94096 -9.47717 -9.24814 -9.05489 -8.60847 -8.52011 -7.76314 -6.15970 -4.24407 0.93731 1.11577 1.69439 2.88340 3.20624 3.29264 3.31747 3.43814 3.79539 4.19391 4.35807 4.46119 4.85227 4.92530 5.14325 5.17508 5.36207 5.44111 5.63486 5.84694 5.99241 6.11027 6.26357 6.55766 6.68534 6.73378 6.85276 6.99408 7.29854 7.57035 7.65202 7.71985 7.93592 8.08599 8.41708 8.74822 8.95910 9.42637 10.89420 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.003599 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.742820 B = 7778.963028 C = 8039.951640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.598 5.598 13 C 0.085 3.915 14 C 0.696 3.304 15 O -0.573 6.573 16 N -0.689 5.689 17 C 0.241 3.759 18 C -0.172 4.172 19 C 0.135 3.865 20 N -0.501 5.501 21 C 0.194 3.806 22 Cl -0.039 7.039 23 C -0.198 4.198 24 H 0.031 0.969 25 H 0.012 0.988 26 H 0.096 0.904 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.159 0.841 33 H 0.168 0.832 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -5.338 14.105 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.171 3.829 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.332 5.332 13 C -0.060 4.060 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.338 5.338 17 C 0.134 3.866 18 C -0.195 4.195 19 C -0.021 4.021 20 N -0.215 5.215 21 C 0.029 3.971 22 Cl -0.011 7.011 23 C -0.223 4.223 24 H 0.050 0.950 25 H 0.031 0.969 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.025 -4.016 14.364 15.738 hybrid contribution -0.549 -1.490 -1.172 1.974 sum 4.476 -5.506 13.192 14.979 Atomic orbital electron populations 1.22129 0.98078 0.99464 1.01063 1.18974 0.90790 0.94349 0.78743 0.91578 1.21336 1.32031 1.13133 0.90154 0.92171 1.24889 0.94884 0.94957 0.99004 1.69879 1.36198 1.22542 1.23828 0.86416 0.78619 0.79562 0.82645 1.19830 1.20896 1.20848 1.47676 1.50506 1.11620 1.23415 1.21557 1.02501 0.83314 0.98579 1.15972 0.79934 0.84972 0.79384 1.90905 1.62530 1.15085 1.76425 1.42991 1.47317 1.18862 1.24620 1.17626 0.88140 0.92632 0.88197 1.22414 0.94575 0.98884 1.03641 1.22527 0.96639 0.96546 0.86352 1.67004 1.22600 1.15964 1.15882 1.21165 0.93941 0.95102 0.86896 1.98389 1.97699 1.94044 1.10926 1.21413 1.03181 1.06222 0.91444 0.95023 0.96872 0.88543 0.92613 0.92875 0.93654 0.90097 0.75426 0.82375 0.81500 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.15 0.33 -3.05 16 2 C 0.27 6.57 2.64 -69.08 -0.18 6.38 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.61 8.37 -34.44 -0.29 -13.90 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.60 -11.83 2.75 -181.01 -0.50 -12.33 16 13 C 0.08 1.26 9.49 59.85 0.57 1.83 16 14 C 0.70 13.52 8.05 -86.93 -0.70 12.82 16 15 O -0.57 -13.24 13.37 5.29 0.07 -13.17 16 16 N -0.69 -10.04 5.23 -14.07 -0.07 -10.11 16 17 C 0.24 3.44 6.33 -83.49 -0.53 2.91 16 18 C -0.17 -2.56 8.73 -39.26 -0.34 -2.90 16 19 C 0.13 1.77 11.17 -17.60 -0.20 1.57 16 20 N -0.50 -7.03 10.34 -10.45 -0.11 -7.14 16 21 C 0.19 2.54 7.27 -17.50 -0.13 2.41 16 22 Cl -0.04 -0.44 29.10 -51.86 -1.51 -1.95 16 23 C -0.20 -2.43 9.82 -39.22 -0.39 -2.81 16 24 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.49 6.29 -51.93 -0.33 0.17 16 30 H 0.08 1.23 6.43 -51.93 -0.33 0.89 16 31 H 0.41 4.56 6.51 -40.82 -0.27 4.30 16 32 H 0.16 2.63 6.48 -52.49 -0.34 2.29 16 33 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 302.78 15.07 4.56 4.56 Total: -1.00 -30.14 302.78 -7.41 -37.54 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.51 Total: 3.97 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.94 Total: 6.89 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.05 Total: -53.17 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.14 -7.41 -37.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181923790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.079 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds