Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47131 * 2 1 4 4 C 1.50704 * 109.47110 * 239.99892 * 2 1 3 5 5 H 1.08001 * 120.00406 * 239.99602 * 4 2 1 6 6 C 1.37882 * 119.99722 * 60.00267 * 4 2 1 7 7 N 1.31516 * 120.00137 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99783 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47197 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46998 * 119.99566 * 8 6 4 11 11 H 1.48496 * 109.47433 * 239.99506 * 8 6 4 12 12 N 1.46500 * 109.47511 * 119.99994 * 2 1 3 13 13 C 1.46498 * 119.99567 * 59.99986 * 12 2 1 14 14 C 1.34771 * 120.00321 * 239.99874 * 12 2 1 15 15 O 1.21582 * 119.99573 * 0.02562 * 14 12 2 16 16 N 1.34773 * 120.00090 * 179.97438 * 14 12 2 17 17 C 1.39545 * 119.99867 * 174.72562 * 16 14 12 18 18 C 1.39454 * 120.84917 * 327.29889 * 17 16 14 19 19 C 1.37892 * 119.10546 * 179.70745 * 18 17 16 20 20 N 1.32012 * 120.85049 * 0.58338 * 19 18 17 21 21 C 1.32054 * 121.87857 * 359.70825 * 20 19 18 22 22 Cl 1.73598 * 119.59929 * 180.02562 * 21 20 19 23 23 C 1.38130 * 120.79961 * 359.97438 * 21 20 19 24 24 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47306 * 299.99796 * 1 2 3 26 26 H 1.08996 * 109.47324 * 60.00017 * 1 2 3 27 27 H 0.96993 * 119.99964 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47581 * 90.00382 * 13 12 2 29 29 H 1.09003 * 109.46976 * 210.00007 * 13 12 2 30 30 H 1.08998 * 109.47798 * 329.99806 * 13 12 2 31 31 H 0.96997 * 120.00178 * 354.72041 * 16 14 12 32 32 H 1.07995 * 120.45219 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.57549 * 180.28861 * 19 18 17 34 34 H 1.08005 * 120.46768 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1285 1.8910 16 7 3.2421 -0.6709 3.1839 17 6 4.1327 -0.0291 4.0454 18 6 5.0707 0.8799 3.5568 19 6 5.9295 1.4980 4.4411 20 7 5.8791 1.2303 5.7328 21 6 5.0098 0.3717 6.2337 22 17 4.9951 0.0646 7.9422 23 6 4.1113 -0.2841 5.4148 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.7081 1.1609 -3.4844 28 1 2.4157 -2.7377 0.9716 29 1 1.6239 -2.2852 2.5001 30 1 0.6904 -2.3002 0.9846 31 1 2.9461 -1.5741 3.3772 32 1 5.1205 1.1007 2.5009 33 1 6.6557 2.2068 4.0716 34 1 3.4029 -0.9856 5.8302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181923790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -6.647146 kcal Electronic energy + Delta-G solvation = -19709.561972 eV Core-core repulsion = 16475.223585 eV Total energy + Delta-G solvation = -3234.338387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04978 -40.62986 -37.80614 -37.40168 -36.34022 -34.81345 -32.32654 -32.04857 -30.69783 -27.75152 -27.28078 -25.03880 -24.70832 -22.90104 -21.00019 -19.69960 -18.79912 -18.27216 -17.55241 -17.19344 -16.92615 -16.45453 -16.12755 -15.71732 -15.45176 -15.04798 -14.85856 -14.47649 -14.20539 -13.48658 -13.29814 -13.11916 -12.96240 -12.82381 -12.70576 -12.60977 -12.34671 -12.20702 -12.11644 -12.01785 -11.35078 -11.15678 -10.70044 -10.52588 -10.08770 -9.86718 -9.31018 -8.14470 -6.30548 -0.09843 0.00960 0.69904 1.42024 1.43872 1.53323 1.59411 2.04018 2.41584 2.65126 2.91700 3.14416 3.49975 3.80668 3.91016 4.03052 4.29535 4.44714 4.57536 4.60651 4.74149 4.88710 4.93716 5.00730 5.05280 5.14667 5.39427 5.50091 5.58095 5.65296 5.93391 6.11367 6.17650 6.67677 6.76708 6.95053 7.34479 7.50397 8.89996 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034916 B = 0.003599 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.742820 B = 7778.963028 C = 8039.951640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.278 3.722 3 H 0.014 0.986 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.287 1.287 12 N -0.606 5.606 13 C 0.079 3.921 14 C 0.693 3.307 15 O -0.618 6.618 16 N -0.668 5.668 17 C 0.224 3.776 18 C -0.189 4.189 19 C 0.139 3.861 20 N -0.513 5.513 21 C 0.184 3.816 22 Cl -0.021 7.021 23 C -0.181 4.181 24 H 0.050 0.950 25 H 0.020 0.980 26 H 0.069 0.931 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.426 0.574 32 H 0.134 0.866 33 H 0.192 0.808 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -7.374 15.517 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.339 5.339 13 C -0.064 4.064 14 C 0.395 3.605 15 O -0.498 6.498 16 N -0.319 5.319 17 C 0.118 3.882 18 C -0.212 4.212 19 C -0.016 4.016 20 N -0.227 5.227 21 C 0.020 3.980 22 Cl 0.008 6.992 23 C -0.205 4.205 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.209 0.791 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.232 -6.119 15.835 17.764 hybrid contribution -0.566 -0.836 -1.487 1.797 sum 4.666 -6.955 14.348 16.613 Atomic orbital electron populations 1.21916 0.97028 1.00334 1.00087 1.18518 0.91489 0.92098 0.80352 0.96804 1.21594 1.31863 1.13076 0.90982 0.92022 1.25692 0.95093 0.95609 1.01920 1.70018 1.37268 1.23857 1.24400 0.85424 0.78167 0.78479 0.79026 1.18931 1.20126 1.21301 1.47497 1.50713 1.13385 1.22329 1.21838 1.02458 0.80306 1.01764 1.16086 0.79676 0.84516 0.80224 1.90878 1.63989 1.17318 1.77639 1.42559 1.46861 1.19368 1.23108 1.17790 0.88216 0.93152 0.89033 1.22344 0.95984 1.00094 1.02815 1.22837 0.96495 0.96356 0.85925 1.67090 1.23136 1.16458 1.16021 1.21463 0.93786 0.94861 0.87933 1.98397 1.97614 1.93869 1.09322 1.21598 1.02970 1.05826 0.90118 0.93083 0.96055 0.91257 0.92633 0.92249 0.89093 0.90251 0.73261 0.84821 0.79142 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.18 8.95 71.98 0.64 -5.54 16 2 C 0.28 13.72 2.64 44.24 0.12 13.84 16 3 H 0.01 0.83 6.90 -2.39 -0.02 0.82 16 4 C -0.54 -27.88 8.37 25.60 0.21 -27.67 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -51.27 11.32 21.45 0.24 -51.03 16 8 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.61 -23.70 2.75 -844.87 -2.33 -26.02 16 13 C 0.08 2.15 9.49 127.77 1.21 3.36 16 14 C 0.69 26.93 8.05 179.06 1.44 28.38 16 15 O -0.62 -29.68 13.37 -3.97 -0.05 -29.73 16 16 N -0.67 -18.39 5.23 -316.71 -1.66 -20.04 16 17 C 0.22 6.11 6.33 38.47 0.24 6.35 16 18 C -0.19 -5.63 8.73 22.48 0.20 -5.44 16 19 C 0.14 3.55 11.17 84.58 0.94 4.49 16 20 N -0.51 -13.61 10.34 -186.96 -1.93 -15.54 16 21 C 0.18 4.41 7.27 84.63 0.62 5.02 16 22 Cl -0.02 -0.41 29.10 -2.72 -0.08 -0.49 16 23 C -0.18 -3.96 9.82 22.50 0.22 -3.74 16 24 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.62 6.29 -2.39 -0.02 1.61 16 30 H 0.08 2.21 6.43 -2.39 -0.02 2.20 16 31 H 0.43 8.17 6.51 -92.71 -0.60 7.57 16 32 H 0.13 4.68 6.48 -2.91 -0.02 4.66 16 33 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -67.24 302.78 3.06 -64.17 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.54 Total: 14.54 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: 6.30 Total: 20.38 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -5.67 Total: -112.64 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -67.24 3.06 -64.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181923790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds