Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21516 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.48164 * 120.00291 * 180.02562 * 14 13 3 17 17 C 1.39567 * 120.87705 * 179.72106 * 16 14 13 18 18 C 1.39046 * 118.96505 * 179.74641 * 17 16 14 19 19 N 1.39030 * 119.63477 * 180.24723 * 18 17 16 20 20 N 1.32364 * 120.72785 * 0.53326 * 18 17 16 21 21 C 1.31970 * 121.93194 * 359.71709 * 20 18 17 22 22 Cl 1.73593 * 119.51785 * 180.02562 * 21 20 18 23 23 C 1.38174 * 120.96260 * 0.02562 * 21 20 18 24 24 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 25 25 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 27 27 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 28 28 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 29 29 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 30 30 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 31 31 H 1.08004 * 120.51564 * 359.97438 * 17 16 14 32 32 H 0.96996 * 119.99854 * 180.28397 * 19 18 17 33 33 H 0.97001 * 119.99623 * 0.27487 * 19 18 17 34 34 H 1.08001 * 120.42133 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3368 2.6305 -0.4591 16 6 0.0681 3.3176 -2.6582 17 6 -1.1885 3.9050 -2.8132 18 6 -1.5015 4.5161 -4.0223 19 7 -2.7473 5.1100 -4.1901 20 7 -0.6287 4.5337 -5.0172 21 6 0.5660 3.9840 -4.9074 22 17 1.6621 4.0441 -6.2523 23 6 0.9572 3.3612 -3.7377 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8787 0.5738 0.4634 30 1 2.2909 2.1165 -1.9977 31 1 -1.9051 3.8883 -2.0054 32 1 -2.9728 5.5342 -5.0328 33 1 -3.3910 5.1000 -3.4645 34 1 1.9370 2.9138 -3.6575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183833394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = -11.767102 kcal Electronic energy + Delta-G solvation = -19767.653896 eV Core-core repulsion = 16533.093491 eV Total energy + Delta-G solvation = -3234.560405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64927 -38.99696 -36.86667 -35.40156 -34.85409 -32.90166 -32.34551 -31.27118 -29.32628 -27.39075 -24.62143 -23.36211 -22.38192 -20.87057 -19.69711 -18.58391 -17.75024 -17.30190 -16.39939 -15.90441 -15.42093 -15.16036 -14.98333 -14.68444 -14.47380 -13.79221 -13.35231 -12.62185 -12.57218 -12.36947 -12.33643 -12.19969 -11.75895 -11.43187 -10.86533 -10.77264 -10.69057 -10.50899 -10.12519 -9.92617 -9.79958 -9.74461 -9.42561 -9.15408 -8.36155 -8.20740 -8.13588 -6.62900 -4.25860 0.67317 0.97926 1.61211 3.11371 3.23525 3.38455 3.42786 3.57181 3.66102 3.84480 4.40780 4.69018 4.73475 4.95831 5.02287 5.09493 5.15406 5.58417 6.00460 6.01905 6.04740 6.09076 6.22103 6.64118 6.74005 6.87173 6.87895 6.97484 7.06126 7.26611 7.30722 7.58019 7.81711 8.20142 8.32318 8.60361 8.81865 9.41360 10.76137 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.004703 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.749081 B = 5951.693511 C = 6831.638475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.247 3.753 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.063 0.937 7 C 0.046 3.954 8 N -0.891 5.891 9 Si 1.033 2.967 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.283 1.283 13 N -0.687 5.687 14 C 0.543 3.457 15 O -0.536 6.536 16 C -0.023 4.023 17 C -0.180 4.180 18 C 0.418 3.582 19 N -0.847 5.847 20 N -0.535 5.535 21 C 0.222 3.778 22 Cl -0.030 7.030 23 C -0.185 4.185 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.271 0.729 30 H 0.394 0.606 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.412 0.588 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 6.254 -11.655 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.144 3.856 4 H 0.064 0.936 5 C -0.662 4.662 6 H 0.082 0.918 7 C -0.162 4.162 8 N -0.523 5.523 9 Si 0.860 3.140 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.209 1.209 13 N -0.334 5.334 14 C 0.327 3.673 15 O -0.414 6.414 16 C -0.034 4.034 17 C -0.206 4.206 18 C 0.180 3.820 19 N -0.392 5.392 20 N -0.256 5.256 21 C 0.058 3.942 22 Cl -0.001 7.001 23 C -0.210 4.210 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.169 0.831 32 H 0.235 0.765 33 H 0.243 0.757 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.312 6.236 -10.214 17.901 hybrid contribution 0.294 0.206 -1.613 1.653 sum -13.018 6.443 -11.828 18.732 Atomic orbital electron populations 1.21903 0.97372 0.99023 1.01948 1.22216 0.93754 0.99519 1.01351 1.19218 0.96063 0.88644 0.81665 0.93558 1.22027 0.89490 1.49745 1.04935 0.91849 1.25629 0.96842 0.91923 1.01770 1.70829 1.10489 1.39889 1.31130 0.84197 0.76396 0.77488 0.75946 1.20934 1.19293 1.20922 1.46270 1.13969 1.54711 1.18484 1.18005 0.83287 0.79656 0.86306 1.90746 1.50884 1.59745 1.40072 1.20374 0.93350 0.95433 0.94231 1.21534 0.98290 1.02743 0.97997 1.17873 0.86349 0.89684 0.88095 1.42165 1.13174 1.63738 1.20090 1.66121 1.03124 1.24120 1.32252 1.20976 0.89248 0.95341 0.88668 1.98411 1.59129 1.96912 1.45657 1.21744 1.02265 1.04851 0.92115 0.93398 0.94956 0.92842 0.92992 0.91933 0.91856 0.77127 0.83124 0.76504 0.75698 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.80 5.03 -26.73 -0.13 -2.93 16 3 C 0.25 5.68 1.78 -69.08 -0.12 5.56 16 4 H 0.05 1.16 5.99 -51.93 -0.31 0.84 16 5 C -0.62 -16.31 8.97 -34.44 -0.31 -16.62 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.26 5.25 -17.82 -0.09 1.16 16 8 N -0.89 -25.90 13.70 55.43 0.76 -25.14 16 9 Si 1.03 24.33 26.33 -169.99 -4.48 19.85 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -5.96 5.88 56.52 0.33 -5.63 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -13.37 4.99 -55.77 -0.28 -13.65 16 14 C 0.54 10.03 6.39 -12.18 -0.08 9.95 16 15 O -0.54 -11.17 13.58 5.35 0.07 -11.09 16 16 C -0.02 -0.34 5.90 -104.70 -0.62 -0.96 16 17 C -0.18 -2.38 9.50 -38.79 -0.37 -2.74 16 18 C 0.42 5.00 7.74 -155.06 -1.20 3.80 16 19 N -0.85 -6.66 9.07 31.11 0.28 -6.37 16 20 N -0.53 -7.13 10.34 -9.60 -0.10 -7.23 16 21 C 0.22 2.98 7.26 -17.52 -0.13 2.85 16 22 Cl -0.03 -0.35 29.10 -51.86 -1.51 -1.86 16 23 C -0.19 -2.55 9.37 -38.98 -0.37 -2.91 16 24 H 0.05 0.93 5.63 -51.93 -0.29 0.63 16 25 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 26 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.40 5.64 -51.93 -0.29 1.10 16 29 H 0.27 7.79 8.73 -40.82 -0.36 7.44 16 30 H 0.39 6.88 6.66 -40.82 -0.27 6.61 16 31 H 0.15 1.85 7.74 -52.48 -0.41 1.45 16 32 H 0.41 2.66 8.95 -40.82 -0.37 2.29 16 33 H 0.41 2.24 8.82 -40.82 -0.36 1.88 16 34 H 0.15 1.85 6.53 -52.49 -0.34 1.50 16 LS Contribution 299.75 15.07 4.52 4.52 Total: -1.00 -30.44 299.75 -7.37 -37.81 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.54 Total: 8.53 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.10 Total: -5.36 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.66 Total: -52.40 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.48 Total: 19.85 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.44 -7.37 -37.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183833394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.039 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds