Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48489 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46801 * 300.00404 * 3 2 1 6 6 H 1.48505 * 109.46995 * 59.99806 * 3 2 1 7 7 C 1.37877 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46681 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46691 * 179.97438 * 10 9 7 12 12 O 1.42100 * 109.47401 * 296.39380 * 11 10 9 13 13 C 1.81395 * 103.00053 * 180.02562 * 11 10 9 14 14 C 1.50701 * 109.47489 * 179.97438 * 13 11 10 15 15 N 1.30704 * 127.01347 * 90.02618 * 14 13 11 16 16 O 1.21458 * 111.69015 * 179.72120 * 15 14 13 17 17 C 1.33169 * 111.27045 * 359.93531 * 16 15 14 18 18 C 1.35509 * 106.45796 * 0.12229 * 17 16 15 19 19 C 1.50084 * 124.86236 * 179.76477 * 18 17 16 20 20 C 1.53540 * 108.22716 * 343.92136 * 19 18 17 21 21 C 1.53110 * 109.52385 * 49.25583 * 20 19 18 22 22 C 1.50562 * 129.72518 * 180.23286 * 17 16 15 23 23 H 0.97000 * 120.00432 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47275 * 59.99588 * 9 7 2 25 25 H 1.08993 * 109.47007 * 299.99585 * 9 7 2 26 26 H 1.08996 * 109.46669 * 60.00319 * 10 9 7 27 27 H 1.08993 * 109.47586 * 299.99873 * 10 9 7 28 28 H 1.09000 * 109.47002 * 60.00028 * 13 11 10 29 29 H 1.09000 * 109.47608 * 300.00375 * 13 11 10 30 30 H 1.09000 * 109.71680 * 103.60639 * 19 18 17 31 31 H 1.08998 * 109.70700 * 224.19956 * 19 18 17 32 32 H 1.08996 * 109.46597 * 169.27489 * 20 19 18 33 33 H 1.09003 * 109.46597 * 289.24124 * 20 19 18 34 34 H 1.09001 * 109.42935 * 50.18274 * 21 20 19 35 35 H 1.09004 * 109.42557 * 170.07249 * 21 20 19 36 36 H 1.09002 * 109.69841 * 282.98713 * 22 17 16 37 37 H 1.08995 * 109.70255 * 43.58015 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.5861 -5.3452 1.2016 13 6 2.6649 -6.4702 0.0020 14 6 2.0634 -7.8519 0.0033 15 7 1.7495 -8.5744 -1.0397 16 8 1.2869 -9.6503 -0.7177 17 6 1.2369 -9.7778 0.6070 18 6 1.7321 -8.6265 1.1224 19 6 1.8599 -8.3277 2.5876 20 6 0.9887 -9.3289 3.3597 21 6 1.2861 -10.7491 2.8710 22 6 0.7487 -10.9293 1.4451 23 1 -0.4851 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8720 -3.6044 -0.8894 28 1 3.2810 -6.3417 0.8919 29 1 3.2812 -6.3427 -0.8880 30 1 2.9004 -8.4323 2.8949 31 1 1.5181 -7.3120 2.7867 32 1 1.2101 -9.2574 4.4245 33 1 -0.0636 -9.0999 3.1916 34 1 2.3631 -10.9164 2.8766 35 1 0.8040 -11.4686 3.5330 36 1 -0.3411 -10.9361 1.4611 37 1 1.1163 -11.8677 1.0300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190794713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = -1.500503 kcal Electronic energy + Delta-G solvation = -19686.053655 eV Core-core repulsion = 16557.522493 eV Total energy + Delta-G solvation = -3128.531162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.95702 -37.82923 -35.21907 -34.70592 -33.68911 -31.02926 -30.90975 -30.46212 -28.76096 -25.32675 -24.55199 -22.90286 -21.68229 -20.84966 -19.44695 -17.74738 -17.29043 -16.99434 -16.44630 -15.47444 -14.78778 -14.66335 -14.45252 -14.26648 -14.16565 -13.99650 -13.61380 -13.38913 -13.06068 -12.69762 -12.55328 -12.34696 -11.78725 -11.37620 -11.31010 -11.16690 -11.11136 -11.01139 -10.80034 -10.75717 -10.46699 -10.16424 -9.90964 -9.43429 -9.07628 -8.95309 -8.43373 -7.72428 -6.05968 -4.10329 1.35756 1.68657 2.48865 2.95226 3.11169 3.27777 3.35290 3.39006 3.96391 4.29982 4.34474 4.42502 4.52953 4.57288 4.77987 4.86309 5.02641 5.22953 5.24356 5.28260 5.29138 5.43190 5.49438 5.60341 5.70103 5.78730 5.84151 5.91635 5.95436 6.04501 6.11157 6.19054 6.77325 7.47740 7.58384 7.89079 8.24160 8.29850 8.94537 9.53966 11.04679 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.037510 B = 0.003370 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.280836 B = 8306.727853 C = 8623.326845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.416 4.416 11 S 1.232 4.768 12 O -0.839 6.839 13 C -0.382 4.382 14 C 0.058 3.942 15 N -0.365 5.365 16 O 0.104 5.896 17 C -0.040 4.040 18 C -0.192 4.192 19 C -0.052 4.052 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.035 4.035 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -22.421 1.672 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.556 4.556 11 S 1.430 4.570 12 O -0.834 6.834 13 C -0.516 4.516 14 C -0.100 4.100 15 N -0.072 5.072 16 O 0.040 5.960 17 C -0.104 4.104 18 C -0.197 4.197 19 C -0.090 4.090 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.073 4.073 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.125 0.875 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.146 -22.330 0.375 22.436 hybrid contribution 1.970 1.396 2.485 3.465 sum 4.116 -20.934 2.861 21.526 Atomic orbital electron populations 1.69969 1.06054 1.26791 1.50282 1.25051 0.94919 0.99372 0.95149 0.86480 0.80005 0.83513 0.77689 1.19734 1.20805 1.20964 1.21182 0.93060 0.90352 1.51236 0.92387 1.18800 0.92965 0.90096 0.98188 1.27627 1.09675 1.12126 1.06169 1.70954 0.86797 0.86720 1.12509 1.93074 1.55693 1.83885 1.50763 1.26275 1.15250 1.01619 1.08432 1.22091 1.01727 0.97190 0.88949 1.74233 1.16082 0.93799 1.23076 1.84697 1.60393 1.28917 1.21965 1.24045 1.03248 0.99212 0.83912 1.20665 1.06775 0.94325 0.97918 1.20015 1.00316 1.01106 0.87540 1.21654 1.00655 0.93777 0.99779 1.21639 1.01802 0.97706 0.94291 1.20212 1.01517 0.93109 0.92432 0.92806 0.95292 0.95821 0.90741 0.87467 0.87986 0.85113 0.90738 0.89171 0.90843 0.91114 0.91271 0.90232 0.88857 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.42 -8.12 5.86 37.16 0.22 -7.90 16 11 S 1.23 20.62 13.14 -107.50 -1.41 19.21 16 12 O -0.84 -18.50 18.02 -35.23 -0.63 -19.13 16 13 C -0.38 -5.32 6.50 36.01 0.23 -5.09 16 14 C 0.06 0.87 6.59 -82.38 -0.54 0.33 16 15 N -0.36 -5.48 12.10 33.47 0.41 -5.07 16 16 O 0.10 1.41 11.20 19.23 0.22 1.63 16 17 C -0.04 -0.47 7.39 -35.35 -0.26 -0.74 16 18 C -0.19 -2.66 6.05 -105.21 -0.64 -3.30 16 19 C -0.05 -0.65 6.29 -27.90 -0.18 -0.82 16 20 C -0.12 -1.13 5.91 -26.39 -0.16 -1.29 16 21 C -0.12 -0.83 5.88 -26.45 -0.16 -0.98 16 22 C -0.03 -0.27 6.31 -27.72 -0.17 -0.44 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.13 1.50 8.14 -51.92 -0.42 1.07 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -35.63 324.81 -8.47 -44.10 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.45 Total: -3.29 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -2.20 Total: -32.78 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 1.14 Total: -31.14 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.42 Total: -17.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 20.62 SS G_CDS: -1.41 Total: 19.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.63 -8.47 -44.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190794713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.595 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds