Wall clock time and date at job start Tue Mar 31 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38230 * 120.00453 * 2 1 4 4 C 1.38232 * 120.00720 * 179.97438 * 3 2 1 5 5 C 1.38246 * 119.99576 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99724 * 179.97438 * 5 4 3 7 7 S 1.81397 * 109.47317 * 89.99877 * 6 5 4 8 8 O 1.42105 * 110.54275 * 68.37192 * 7 6 5 9 9 O 1.42101 * 110.54298 * 291.62295 * 7 6 5 10 10 N 1.65599 * 104.44825 * 179.97438 * 7 6 5 11 11 C 1.46497 * 120.00110 * 65.00280 * 10 7 6 12 12 H 1.09008 * 109.46936 * 335.00191 * 11 10 7 13 13 C 1.52999 * 109.47254 * 94.99537 * 11 10 7 14 14 C 1.50695 * 109.47423 * 214.99853 * 11 10 7 15 15 H 1.08008 * 119.99517 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00306 * 180.02562 * 14 11 10 17 17 N 1.31517 * 120.00074 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00010 * 180.02562 * 16 14 11 19 19 H 1.48504 * 109.47353 * 89.99850 * 18 16 14 20 20 H 1.48500 * 109.47094 * 209.99909 * 18 16 14 21 21 H 1.48500 * 109.47230 * 329.99608 * 18 16 14 22 22 C 1.38232 * 119.99682 * 0.25289 * 5 4 3 23 23 C 1.38234 * 120.00486 * 359.46940 * 22 5 4 24 24 H 1.08997 * 109.47051 * 89.99978 * 1 2 3 25 25 H 1.09005 * 109.47441 * 209.99842 * 1 2 3 26 26 H 1.09002 * 109.47516 * 330.00007 * 1 2 3 27 27 H 1.08007 * 119.99412 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.00171 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47172 * 329.99837 * 6 5 4 30 30 H 1.09000 * 109.46699 * 209.99740 * 6 5 4 31 31 H 0.96999 * 120.00046 * 244.99555 * 10 7 6 32 32 H 1.08994 * 109.47130 * 60.00237 * 13 11 10 33 33 H 1.08998 * 109.47041 * 180.02562 * 13 11 10 34 34 H 1.09000 * 109.47228 * 300.00323 * 13 11 10 35 35 H 0.96995 * 120.00130 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.99530 * 179.73053 * 22 5 4 37 37 H 1.07997 * 120.00079 * 180.27657 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 16 6.3834 -0.0001 1.7107 8 8 6.0873 -1.2371 2.3444 9 8 6.0873 1.2370 2.3443 10 7 8.0330 -0.0007 1.5657 11 6 8.7162 1.1487 0.9673 12 1 8.0305 1.6727 0.3013 13 6 9.1791 2.0994 2.0732 14 6 9.9110 0.6707 0.1832 15 1 10.1385 -0.3841 0.1351 16 6 10.7138 1.5796 -0.4727 17 7 10.4366 2.8639 -0.4145 18 14 12.1945 0.9869 -1.4452 19 1 11.7879 0.7102 -2.8465 20 1 13.2466 2.0348 -1.4328 21 1 12.7260 -0.2555 -0.8295 22 6 3.5805 -1.1972 -0.0053 23 6 2.1981 -1.1972 0.0000 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6581 2.1324 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 6.1420 0.8899 -0.5133 30 1 6.1420 -0.8901 -0.5133 31 1 8.5470 -0.7622 1.8771 32 1 9.8647 1.5756 2.7391 33 1 9.6870 2.9548 1.6279 34 1 8.3149 2.4452 2.6403 35 1 11.0016 3.5034 -0.8757 36 1 4.1205 -2.1325 -0.0097 37 1 1.6581 -2.1325 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288174549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:03 Heat of formation + Delta-G solvation = -63.769420 kcal Electronic energy + Delta-G solvation = -20105.093825 eV Core-core repulsion = 16973.862480 eV Total energy + Delta-G solvation = -3131.231345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.47032 -36.57296 -35.51541 -35.30023 -34.02145 -32.22818 -30.97521 -29.54000 -28.27021 -25.25655 -25.17501 -22.78246 -21.00273 -20.97026 -18.76251 -17.50094 -16.45846 -16.29053 -15.73800 -15.50738 -15.22781 -15.03453 -14.65225 -13.87761 -13.64912 -13.45642 -13.02568 -12.83460 -12.61804 -12.29973 -12.19696 -12.10480 -11.68204 -11.59359 -11.47013 -11.32056 -11.15608 -11.01194 -10.99529 -10.65604 -10.57486 -10.28135 -10.12800 -9.23938 -8.96903 -8.68225 -8.53460 -8.22913 -6.18068 -4.27209 0.65889 1.36482 1.38397 3.20992 3.28643 3.30734 3.46062 3.68476 4.21012 4.32226 4.56828 4.63018 4.81893 4.84019 4.98614 5.13289 5.16131 5.40601 5.42444 5.43452 5.60418 5.66895 5.76073 6.02389 6.04694 6.28197 6.34682 6.51323 6.51888 6.81176 6.93816 7.06457 7.09411 7.55075 7.68676 7.79708 8.00859 8.24495 8.77040 9.40032 10.87310 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.004308 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.379743 B = 6497.326349 C = 6733.789590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.101 4.101 5 C -0.087 4.087 6 C -0.591 4.591 7 S 2.609 3.391 8 O -0.977 6.977 9 O -0.955 6.955 10 N -1.103 6.103 11 C 0.273 3.727 12 H 0.038 0.962 13 C -0.158 4.158 14 C -0.530 4.530 15 H 0.065 0.935 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.104 4.104 23 C -0.121 4.121 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.409 0.591 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.130 0.870 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 -4.912 -1.359 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.089 4.089 6 C -0.717 4.717 7 S 2.700 3.300 8 O -0.968 6.968 9 O -0.945 6.945 10 N -0.863 5.863 11 C 0.168 3.832 12 H 0.056 0.944 13 C -0.217 4.217 14 C -0.569 4.569 15 H 0.083 0.917 16 C -0.139 4.139 17 N -0.524 5.524 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.123 4.123 23 C -0.139 4.139 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.242 0.758 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.201 -4.553 -0.692 15.883 hybrid contribution 1.368 -0.540 -1.288 1.955 sum -13.833 -5.092 -1.980 14.873 Atomic orbital electron populations 1.20792 0.91112 1.02846 1.02269 1.19995 0.96171 0.93277 0.99392 1.21036 0.93865 0.97746 1.01042 1.21243 0.94547 0.97860 0.98380 1.19093 0.92183 0.94225 1.03394 1.29735 1.00631 1.12877 1.28469 1.04948 0.74083 0.74204 0.76763 1.93522 1.84501 1.45633 1.73097 1.93573 1.84267 1.45409 1.71285 1.55650 1.23642 1.29593 1.77460 1.18530 0.92640 0.81297 0.90699 0.94437 1.22221 0.99490 1.01812 0.98215 1.21327 1.10700 0.93882 1.31022 0.91695 1.24935 0.97800 0.94817 0.96307 1.69879 1.38977 1.00924 1.42584 0.86466 0.82062 0.78555 0.80145 1.20586 1.21066 1.19787 1.21169 0.94524 0.97612 0.99013 1.21009 0.93836 0.97697 1.01317 0.91177 0.91503 0.91452 0.85585 0.84925 0.83688 0.84197 0.75786 0.94930 0.89101 0.95387 0.92501 0.85242 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.62 16 3 C -0.12 -1.46 9.70 -39.59 -0.38 -1.84 16 4 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 5 C -0.09 -1.32 5.14 -104.62 -0.54 -1.85 16 6 C -0.59 -9.19 6.09 36.01 0.22 -8.97 16 7 S 2.61 48.86 5.36 -107.50 -0.58 48.29 16 8 O -0.98 -19.60 18.08 -57.54 -1.04 -20.64 16 9 O -0.96 -20.64 17.11 -57.54 -0.98 -21.63 16 10 N -1.10 -22.17 5.35 -5.88 -0.03 -22.20 16 11 C 0.27 6.45 2.66 -69.09 -0.18 6.26 16 12 H 0.04 0.91 7.15 -51.92 -0.37 0.54 16 13 C -0.16 -3.82 9.29 37.16 0.35 -3.48 16 14 C -0.53 -13.43 8.76 -34.44 -0.30 -13.73 16 15 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -23.77 11.32 55.43 0.63 -23.14 16 18 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 C -0.10 -1.42 9.70 -39.58 -0.38 -1.81 16 23 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.14 2.22 7.39 -51.92 -0.38 1.84 16 30 H 0.14 1.89 8.08 -51.92 -0.42 1.47 16 31 H 0.41 7.61 8.79 -34.47 -0.30 7.30 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 34 H 0.03 0.65 7.43 -51.93 -0.39 0.26 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -31.23 325.74 -9.56 -40.79 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.10 Total: 8.23 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -2.34 Total: -29.65 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.60 Total: -45.34 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -2.02 Total: -42.26 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -0.58 Total: 48.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.23 -9.56 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288174549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.977 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds