Wall clock time and date at job start Tue Mar 31 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 N 1.65603 * 104.45019 * 180.02562 * 7 6 5 11 11 C 1.46499 * 119.99855 * 64.99917 * 10 7 6 12 12 C 1.53006 * 109.46751 * 164.99940 * 11 10 7 13 13 C 1.50696 * 109.46914 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99830 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99818 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00186 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47001 * 89.99680 * 17 15 13 19 19 H 1.48504 * 109.46946 * 210.00072 * 17 15 13 20 20 H 1.48500 * 109.46868 * 329.99733 * 17 15 13 21 21 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 22 22 C 1.38234 * 120.00033 * 0.49775 * 21 5 4 23 23 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 24 24 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 25 25 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 26 26 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 29 29 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 30 30 H 0.97003 * 119.99786 * 244.99840 * 10 7 6 31 31 H 1.08995 * 109.47210 * 284.99733 * 11 10 7 32 32 H 1.08996 * 109.46886 * 45.00485 * 11 10 7 33 33 H 1.08995 * 109.47094 * 299.99864 * 12 11 10 34 34 H 1.08998 * 109.46810 * 59.99841 * 12 11 10 35 35 H 0.97006 * 120.00161 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.99934 * 180.25938 * 21 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 7 8.0390 -0.0023 1.5466 11 6 8.7189 1.1490 0.9480 12 6 10.2153 1.0756 1.2587 13 6 10.9149 2.2596 0.6425 14 1 10.3489 2.9914 0.0855 15 6 12.2775 2.4091 0.7909 16 7 12.8880 3.4426 0.2536 17 14 13.2565 1.1436 1.7551 18 1 13.7241 0.0748 0.8364 19 1 14.4286 1.8012 2.3870 20 1 12.3950 0.5491 2.8084 21 6 3.5805 -1.1972 0.0010 22 6 2.1982 -1.1972 0.0009 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1324 -0.0004 27 1 4.1205 2.1325 0.0001 28 1 6.1400 -0.8891 -0.5270 29 1 6.1401 0.8909 -0.5236 30 1 8.5547 -0.7641 1.8543 31 1 8.5711 1.1373 -0.1318 32 1 8.3068 2.0695 1.3614 33 1 10.3632 1.0873 2.3386 34 1 10.6274 0.1550 0.8455 35 1 13.8467 3.5477 0.3576 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289023901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:13 Heat of formation + Delta-G solvation = -64.839429 kcal Electronic energy + Delta-G solvation = -19479.028685 eV Core-core repulsion = 16347.750941 eV Total energy + Delta-G solvation = -3131.277744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68778 -36.96194 -35.82392 -35.53636 -34.26413 -32.71483 -31.18207 -29.82981 -29.68274 -25.44305 -24.58449 -22.99711 -21.26137 -20.90429 -19.21185 -17.54883 -16.89040 -16.72804 -16.11970 -15.88726 -15.48972 -15.26129 -14.30256 -14.24432 -14.10623 -13.99592 -13.66763 -13.24170 -13.07164 -12.66053 -12.49152 -12.33959 -12.13317 -11.95809 -11.84338 -11.63313 -11.52826 -11.35021 -11.20534 -10.98835 -10.49819 -10.07796 -9.90263 -9.36623 -9.17305 -9.10834 -8.66122 -8.61730 -6.13266 -4.13501 0.23376 1.12873 1.16165 2.94384 3.25459 3.34106 3.36911 3.46722 3.84318 4.19131 4.28954 4.37546 4.58081 4.64496 4.78182 4.87213 5.14550 5.19830 5.20611 5.27543 5.31507 5.46890 5.52618 5.58874 5.81586 5.82617 6.00309 6.13199 6.22271 6.26660 6.33081 6.48114 6.72729 7.09835 7.19824 7.29008 7.66686 8.40050 8.89342 9.47536 10.99554 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.038832 B = 0.003380 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.875254 B = 8281.467788 C = 8634.014846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.118 4.118 4 C -0.100 4.100 5 C -0.094 4.094 6 C -0.589 4.589 7 S 2.609 3.391 8 O -0.950 6.950 9 O -0.964 6.964 10 N -1.118 6.118 11 C 0.122 3.878 12 C -0.018 4.018 13 C -0.526 4.526 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.103 4.103 22 C -0.120 4.120 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.415 0.585 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.265 0.735 36 H 0.130 0.870 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.650 -9.171 -2.339 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.119 4.119 5 C -0.096 4.096 6 C -0.715 4.715 7 S 2.701 3.299 8 O -0.940 6.940 9 O -0.954 6.954 10 N -0.879 5.879 11 C -0.003 4.003 12 C -0.057 4.057 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.122 4.122 22 C -0.138 4.138 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.249 0.751 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.034 -8.905 -1.623 23.821 hybrid contribution 1.192 -0.878 -0.277 1.506 sum -20.842 -9.783 -1.899 23.102 Atomic orbital electron populations 1.20816 0.90952 1.03009 1.02424 1.20042 0.96326 0.93243 0.98739 1.21063 0.93854 0.97874 1.00849 1.21229 0.94642 0.97726 0.98327 1.18989 0.91740 0.94375 1.04462 1.29685 1.01442 1.12733 1.27683 1.05053 0.73534 0.74435 0.76882 1.93595 1.83768 1.45513 1.71123 1.93564 1.83854 1.45250 1.72770 1.55649 1.25059 1.29028 1.78140 1.21492 0.96485 0.86025 0.96272 1.19754 0.90050 0.98115 0.97776 1.20956 0.93042 1.07921 1.34525 0.90597 1.24994 0.97753 0.95400 0.95103 1.69900 1.10017 1.29001 1.44772 0.86773 0.79838 0.81765 0.80890 1.20225 1.21247 1.18900 1.21168 0.94613 0.97532 0.98838 1.21036 0.93824 0.97824 1.01112 0.91024 0.91386 0.91326 0.85417 0.84893 0.84030 0.83785 0.75122 0.92378 0.90615 0.95563 0.96247 0.92534 0.85173 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.08 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.09 -1.13 5.14 -104.63 -0.54 -1.66 16 6 C -0.59 -6.63 6.20 36.00 0.22 -6.41 16 7 S 2.61 38.76 5.44 -107.50 -0.59 38.17 16 8 O -0.95 -17.31 17.49 -57.54 -1.01 -18.32 16 9 O -0.96 -16.17 18.08 -57.54 -1.04 -17.21 16 10 N -1.12 -17.29 5.89 -10.61 -0.06 -17.36 16 11 C 0.12 2.23 6.07 -4.04 -0.02 2.21 16 12 C -0.02 -0.40 4.18 -27.88 -0.12 -0.52 16 13 C -0.53 -14.32 9.66 -34.44 -0.33 -14.65 16 14 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 17 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 21 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 22 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.14 1.26 8.09 -51.92 -0.42 0.84 16 29 H 0.14 1.43 8.09 -51.92 -0.42 1.01 16 30 H 0.41 5.87 8.62 -34.47 -0.30 5.57 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 34 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -34.50 328.74 -9.58 -44.08 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.27 Total: 2.63 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -2.68 Total: -27.15 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.71 Total: -43.54 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -2.05 Total: -35.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 38.76 SS G_CDS: -0.59 Total: 38.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.50 -9.58 -44.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289023901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.763 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds