Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00025 * 2 1 4 4 N 1.46898 * 109.47286 * 124.15299 * 3 2 1 5 5 C 1.46901 * 110.99974 * 301.09579 * 4 3 2 6 6 C 1.50701 * 109.47059 * 288.30837 * 5 4 3 7 7 H 1.08000 * 119.99977 * 355.63046 * 6 5 4 8 8 C 1.37872 * 119.99759 * 175.62533 * 6 5 4 9 9 N 1.31512 * 119.99873 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00417 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47070 * 89.99405 * 10 8 6 12 12 H 1.48494 * 109.47380 * 210.00036 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00080 * 10 8 6 14 14 C 1.46906 * 110.99838 * 65.04831 * 4 3 2 15 15 C 1.50700 * 109.46998 * 66.04624 * 14 4 3 16 16 C 1.38210 * 119.99429 * 259.72263 * 15 14 4 17 17 C 1.38430 * 119.98696 * 179.79101 * 16 15 14 18 18 F 1.35102 * 120.01403 * 180.25483 * 17 16 15 19 19 C 1.38489 * 119.97532 * 0.49034 * 17 16 15 20 20 C 1.38165 * 119.98153 * 359.74142 * 19 17 16 21 21 C 1.38334 * 119.99345 * 80.00403 * 15 14 4 22 22 Cl 1.73598 * 119.98568 * 359.97438 * 21 15 14 23 23 H 1.07999 * 120.00435 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.99846 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99592 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47547 * 4.15232 * 3 2 1 27 27 H 1.09003 * 109.47397 * 244.15685 * 3 2 1 28 28 H 1.09005 * 109.46972 * 48.31305 * 5 4 3 29 29 H 1.08997 * 109.46950 * 168.30634 * 5 4 3 30 30 H 0.97003 * 120.00579 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.46912 * 186.04694 * 14 4 3 32 32 H 1.09001 * 109.46968 * 306.04725 * 14 4 3 33 33 H 1.07998 * 120.00835 * 0.02562 * 16 15 14 34 34 H 1.07992 * 120.00357 * 179.72645 * 19 17 16 35 35 H 1.08009 * 119.98813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3404 1.1461 5 6 2.2500 1.1944 2.4115 6 6 1.4737 2.4554 2.6913 7 1 1.5742 3.3080 2.0360 8 6 0.6351 2.5205 3.7837 9 7 -0.0421 3.6211 4.0281 10 14 0.4616 1.0460 4.9174 11 1 1.4732 1.1332 6.0011 12 1 -0.8997 1.0351 5.5106 13 1 0.6736 -0.2024 4.1417 14 6 4.0230 0.3120 1.0183 15 6 4.9064 0.6352 -0.1590 16 6 4.7213 -0.0194 -1.3621 17 6 5.5301 0.2808 -2.4447 18 9 5.3462 -0.3551 -3.6224 19 6 6.5310 1.2296 -2.3186 20 6 6.7182 1.8798 -1.1140 21 6 5.9063 1.5829 -0.0336 22 17 6.1426 2.3999 1.4798 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3576 2.1323 0.0744 27 1 2.6332 1.3958 -0.9249 28 1 1.5616 0.3525 2.3381 29 1 2.9572 1.0158 3.2215 30 1 -0.6324 3.6669 4.7965 31 1 4.6235 0.2882 1.9276 32 1 3.5559 -0.6610 0.8658 33 1 3.9433 -0.7622 -1.4587 34 1 7.1651 1.4609 -3.1616 35 1 7.4985 2.6202 -1.0157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292168968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = 2.434070 kcal Electronic energy + Delta-G solvation = -19922.738753 eV Core-core repulsion = 16668.874196 eV Total energy + Delta-G solvation = -3253.864557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.99367 -39.54343 -37.25870 -36.14167 -32.88865 -32.72335 -31.28596 -30.24439 -27.84910 -26.41469 -23.92969 -22.89284 -21.52787 -20.81984 -18.92375 -17.32594 -16.74763 -16.64438 -16.51258 -15.75502 -15.21844 -14.85376 -14.45762 -14.08922 -14.04346 -13.54814 -13.38041 -12.97524 -12.76246 -12.37249 -12.32153 -11.68225 -11.38971 -11.33828 -11.15654 -11.04599 -10.81794 -10.61298 -10.45790 -10.35758 -9.88811 -9.34397 -9.15343 -8.81384 -8.53898 -8.48424 -7.40043 -6.02574 -3.98779 0.94394 1.04087 2.34355 2.75946 3.28742 3.35581 3.37217 3.37844 4.09272 4.43580 4.52932 4.64588 4.90422 4.99256 5.16848 5.29724 5.41596 5.48434 5.54193 5.67854 5.74020 5.93110 5.94394 5.97294 6.06582 6.28610 6.34713 6.59340 6.65164 6.81374 6.98665 7.07138 7.24015 7.61010 7.85868 7.98543 8.67296 9.07758 9.59660 11.10724 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.005638 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.330132 B = 4965.439610 C = 5891.134588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.187 4.187 3 C 0.087 3.913 4 N -0.506 5.506 5 C 0.160 3.840 6 C -0.499 4.499 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.080 3.920 15 C -0.028 4.028 16 C -0.139 4.139 17 C 0.097 3.903 18 F -0.140 7.140 19 C -0.150 4.150 20 C -0.086 4.086 21 C -0.026 4.026 22 Cl -0.042 7.042 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.001 0.999 29 H 0.021 0.979 30 H 0.262 0.738 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.983 -7.535 -11.178 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C -0.041 4.041 4 N -0.227 5.227 5 C 0.034 3.966 6 C -0.538 4.538 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.541 5.541 10 Si 0.696 3.304 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.048 4.048 15 C -0.030 4.030 16 C -0.158 4.158 17 C 0.078 3.922 18 F -0.118 7.118 19 C -0.169 4.169 20 C -0.105 4.105 21 C -0.054 4.054 22 Cl -0.013 7.013 23 H 0.104 0.896 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.018 0.982 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.102 -6.927 -10.913 17.707 hybrid contribution -0.653 -1.641 0.621 1.872 sum 11.449 -8.568 -10.292 17.618 Atomic orbital electron populations 1.23794 0.96070 1.01438 1.00082 1.23549 0.96805 0.99674 1.00673 1.21321 0.94769 0.94655 0.93357 1.62296 1.12785 1.44059 1.03597 1.20251 0.92698 0.97665 0.85938 1.20954 1.23046 0.98647 1.11110 0.90155 1.24846 0.95453 0.95491 0.97336 1.69886 1.28680 1.26619 1.28891 0.86960 0.77560 0.84220 0.81648 1.20266 1.21308 1.19192 1.21166 0.93938 0.94643 0.95075 1.19677 0.94345 0.93653 0.95302 1.21024 1.00733 1.02545 0.91510 1.17668 0.97754 0.95100 0.81720 1.91498 1.94751 1.80522 1.45071 1.21000 0.99147 0.97815 0.98914 1.20889 0.99180 0.99632 0.90821 1.20851 0.98017 0.97091 0.89406 1.98411 1.96062 1.77250 1.29554 0.89639 0.88022 0.88736 0.89084 0.91825 0.98162 0.96129 0.92769 0.89441 0.94043 0.84275 0.84257 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 14.32 29.01 0.42 -2.51 16 2 C -0.19 -3.14 7.39 -36.03 -0.27 -3.41 16 3 C 0.09 1.58 5.44 -4.98 -0.03 1.56 16 4 N -0.51 -9.92 4.65 -238.96 -1.11 -11.04 16 5 C 0.16 3.72 3.67 -4.98 -0.02 3.71 16 6 C -0.50 -13.78 9.10 -34.44 -0.31 -14.09 16 7 H 0.08 2.44 7.87 -52.49 -0.41 2.03 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 10 Si 0.87 21.31 27.56 -169.99 -4.68 16.62 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.31 6.42 56.52 0.36 -5.95 16 14 C 0.08 1.29 4.35 -4.97 -0.02 1.27 16 15 C -0.03 -0.40 4.58 -104.60 -0.48 -0.88 16 16 C -0.14 -1.77 8.59 -39.52 -0.34 -2.10 16 17 C 0.10 1.17 7.30 -39.42 -0.29 0.88 16 18 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 19 C -0.15 -1.59 10.03 -39.52 -0.40 -1.98 16 20 C -0.09 -0.97 9.83 -39.56 -0.39 -1.36 16 21 C -0.03 -0.36 6.31 -39.50 -0.25 -0.61 16 22 Cl -0.04 -0.63 27.51 -51.86 -1.43 -2.06 16 23 H 0.09 1.25 8.06 -52.49 -0.42 0.83 16 24 H 0.10 1.78 7.84 -52.48 -0.41 1.37 16 25 H 0.09 1.44 6.83 -52.49 -0.36 1.08 16 26 H 0.09 1.89 7.03 -51.93 -0.37 1.52 16 27 H 0.06 1.06 6.37 -51.93 -0.33 0.73 16 28 H 0.00 0.02 5.43 -51.93 -0.28 -0.27 16 29 H 0.02 0.49 7.46 -51.93 -0.39 0.10 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.09 1.43 7.08 -51.93 -0.37 1.06 16 32 H 0.04 0.63 6.24 -51.93 -0.32 0.30 16 33 H 0.14 1.63 8.03 -52.49 -0.42 1.21 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -29.61 310.61 -8.30 -37.91 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.10 Total: -0.23 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.47 Total: -17.63 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.34 Total: -37.61 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.68 Total: 16.62 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.43 Total: -2.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.61 -8.30 -37.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.342 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds