Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00025 * 2 1 4 4 N 1.46898 * 109.47286 * 124.15299 * 3 2 1 5 5 C 1.46901 * 110.99974 * 301.09579 * 4 3 2 6 6 C 1.50701 * 109.47059 * 288.30837 * 5 4 3 7 7 H 1.08000 * 119.99977 * 355.63046 * 6 5 4 8 8 C 1.37872 * 119.99759 * 175.62533 * 6 5 4 9 9 N 1.31512 * 119.99873 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00417 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47070 * 89.99405 * 10 8 6 12 12 H 1.48494 * 109.47380 * 210.00036 * 10 8 6 13 13 H 1.48503 * 109.46977 * 330.00080 * 10 8 6 14 14 C 1.46906 * 110.99838 * 65.04831 * 4 3 2 15 15 C 1.50700 * 109.46998 * 66.04624 * 14 4 3 16 16 C 1.38210 * 119.99429 * 259.72263 * 15 14 4 17 17 C 1.38430 * 119.98696 * 179.79101 * 16 15 14 18 18 F 1.35102 * 120.01403 * 180.25483 * 17 16 15 19 19 C 1.38489 * 119.97532 * 0.49034 * 17 16 15 20 20 C 1.38165 * 119.98153 * 359.74142 * 19 17 16 21 21 C 1.38334 * 119.99345 * 80.00403 * 15 14 4 22 22 Cl 1.73598 * 119.98568 * 359.97438 * 21 15 14 23 23 H 1.07999 * 120.00435 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.99846 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99592 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47547 * 4.15232 * 3 2 1 27 27 H 1.09003 * 109.47397 * 244.15685 * 3 2 1 28 28 H 1.09005 * 109.46972 * 48.31305 * 5 4 3 29 29 H 1.08997 * 109.46950 * 168.30634 * 5 4 3 30 30 H 0.97003 * 120.00579 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.46912 * 186.04694 * 14 4 3 32 32 H 1.09001 * 109.46968 * 306.04725 * 14 4 3 33 33 H 1.07998 * 120.00835 * 0.02562 * 16 15 14 34 34 H 1.07992 * 120.00357 * 179.72645 * 19 17 16 35 35 H 1.08009 * 119.98813 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3404 1.1461 5 6 2.2500 1.1944 2.4115 6 6 1.4737 2.4554 2.6913 7 1 1.5742 3.3080 2.0360 8 6 0.6351 2.5205 3.7837 9 7 -0.0421 3.6211 4.0281 10 14 0.4616 1.0460 4.9174 11 1 1.4732 1.1332 6.0011 12 1 -0.8997 1.0351 5.5106 13 1 0.6736 -0.2024 4.1417 14 6 4.0230 0.3120 1.0183 15 6 4.9064 0.6352 -0.1590 16 6 4.7213 -0.0194 -1.3621 17 6 5.5301 0.2808 -2.4447 18 9 5.3462 -0.3551 -3.6224 19 6 6.5310 1.2296 -2.3186 20 6 6.7182 1.8798 -1.1140 21 6 5.9063 1.5829 -0.0336 22 17 6.1426 2.3999 1.4798 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3576 2.1323 0.0744 27 1 2.6332 1.3958 -0.9249 28 1 1.5616 0.3525 2.3381 29 1 2.9572 1.0158 3.2215 30 1 -0.6324 3.6669 4.7965 31 1 4.6235 0.2882 1.9276 32 1 3.5559 -0.6610 0.8658 33 1 3.9433 -0.7622 -1.4587 34 1 7.1651 1.4609 -3.1616 35 1 7.4985 2.6202 -1.0157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292168968.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = -14.685408 kcal Electronic energy + Delta-G solvation = -19923.481109 eV Core-core repulsion = 16668.874196 eV Total energy + Delta-G solvation = -3254.606914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.93044 -40.62584 -38.65861 -37.23062 -34.78062 -34.13089 -32.64906 -31.25664 -29.63885 -27.71092 -25.53173 -23.85306 -22.88735 -22.29390 -20.34008 -18.84645 -18.24460 -17.70618 -17.50372 -16.90505 -16.63340 -16.26521 -16.03219 -15.51297 -15.32984 -14.67726 -14.55348 -14.46706 -14.01924 -13.99602 -13.45227 -13.29538 -12.93650 -12.62299 -12.40795 -12.38065 -12.24072 -12.17305 -12.08136 -11.82819 -11.55846 -11.41174 -10.73443 -10.28784 -10.02616 -9.49796 -8.93349 -8.22715 -6.23655 -0.03505 0.10061 1.28954 1.35707 1.36327 1.42191 1.46530 2.37099 2.38910 3.11631 3.12432 3.41905 3.63923 3.69416 4.05527 4.06300 4.19578 4.24901 4.45289 4.46365 4.59650 4.74671 4.82469 4.93422 4.98440 5.00475 5.03639 5.06920 5.22894 5.30234 5.61138 5.70191 5.72518 5.84334 6.08278 6.39217 6.67668 6.82471 7.39009 8.94261 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.005638 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.330132 B = 4965.439610 C = 5891.134588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.190 4.190 3 C 0.093 3.907 4 N -0.520 5.520 5 C 0.173 3.827 6 C -0.498 4.498 7 H 0.035 0.965 8 C 0.011 3.989 9 N -0.951 5.951 10 Si 0.936 3.064 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.247 1.247 14 C 0.084 3.916 15 C -0.044 4.044 16 C -0.138 4.138 17 C 0.092 3.908 18 F -0.140 7.140 19 C -0.135 4.135 20 C -0.082 4.082 21 C -0.040 4.040 22 Cl -0.063 7.063 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.120 0.880 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.003 0.997 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.341 -9.835 -12.201 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C -0.035 4.035 4 N -0.242 5.242 5 C 0.047 3.953 6 C -0.536 4.536 7 H 0.053 0.947 8 C -0.186 4.186 9 N -0.592 5.592 10 Si 0.761 3.239 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.171 1.171 14 C -0.043 4.043 15 C -0.046 4.046 16 C -0.157 4.157 17 C 0.073 3.927 18 F -0.119 7.119 19 C -0.154 4.154 20 C -0.100 4.100 21 C -0.068 4.068 22 Cl -0.034 7.034 23 H 0.130 0.870 24 H 0.100 0.900 25 H 0.138 0.862 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 13.481 -9.241 -11.963 20.255 hybrid contribution -1.012 -0.844 0.784 1.533 sum 12.470 -10.085 -11.179 19.549 Atomic orbital electron populations 1.23924 0.96264 1.01817 0.99746 1.23580 0.96855 0.99611 1.00894 1.21171 0.94307 0.94472 0.93555 1.62101 1.13244 1.46411 1.02430 1.19943 0.92412 0.95079 0.87914 1.21156 1.23323 0.99109 1.10057 0.94704 1.25720 0.95158 0.98530 0.99192 1.70050 1.30024 1.29225 1.29937 0.85871 0.77586 0.80941 0.79539 1.19392 1.21169 1.17092 1.21121 0.92999 0.94159 0.96068 1.19490 0.94823 0.95031 0.95231 1.21074 1.01084 1.02489 0.91095 1.17784 0.98042 0.95417 0.81489 1.91504 1.94787 1.80594 1.44997 1.21339 0.98436 0.96230 0.99408 1.21157 0.99017 0.99761 0.90099 1.21057 0.98955 0.97388 0.89353 1.98403 1.96171 1.77707 1.31105 0.87016 0.89992 0.86228 0.92831 0.90121 0.97951 0.96028 0.92724 0.89930 0.92541 0.83313 0.81155 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 14.32 67.78 0.97 -4.78 16 2 C -0.19 -6.05 7.39 25.64 0.19 -5.86 16 3 C 0.09 3.37 5.44 85.56 0.47 3.84 16 4 N -0.52 -20.29 4.65 -909.93 -4.23 -24.52 16 5 C 0.17 8.00 3.67 85.56 0.31 8.32 16 6 C -0.50 -28.32 9.10 25.60 0.23 -28.09 16 7 H 0.03 2.24 7.87 -2.91 -0.02 2.22 16 8 C 0.01 0.62 5.47 84.65 0.46 1.08 16 9 N -0.95 -59.57 13.96 21.44 0.30 -59.27 16 10 Si 0.94 43.85 27.56 68.60 1.89 45.74 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.25 -10.70 6.42 99.48 0.64 -10.06 16 14 C 0.08 2.59 4.35 85.56 0.37 2.96 16 15 C -0.04 -1.18 4.58 -19.85 -0.09 -1.27 16 16 C -0.14 -3.17 8.59 22.31 0.19 -2.98 16 17 C 0.09 1.94 7.30 22.38 0.16 2.10 16 18 F -0.14 -3.03 17.27 44.97 0.78 -2.25 16 19 C -0.14 -2.39 10.03 22.31 0.22 -2.16 16 20 C -0.08 -1.61 9.83 22.28 0.22 -1.39 16 21 C -0.04 -1.04 6.31 22.32 0.14 -0.90 16 22 Cl -0.06 -1.87 27.51 -2.72 -0.07 -1.95 16 23 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 24 H 0.08 2.92 7.84 -2.91 -0.02 2.90 16 25 H 0.12 3.24 6.83 -2.91 -0.02 3.22 16 26 H 0.05 2.33 7.03 -2.39 -0.02 2.31 16 27 H 0.08 2.62 6.37 -2.39 -0.02 2.61 16 28 H 0.00 0.13 5.43 -2.38 -0.01 0.12 16 29 H 0.02 1.00 7.46 -2.39 -0.02 0.98 16 30 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 31 H 0.08 2.61 7.08 -2.39 -0.02 2.59 16 32 H 0.06 1.56 6.24 -2.39 -0.01 1.55 16 33 H 0.15 3.06 8.03 -2.91 -0.02 3.04 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -65.47 310.61 3.54 -61.93 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.03 Total: 9.46 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.86 Total: -29.14 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -3.93 Total: -83.80 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.89 Total: 45.74 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.95 kcal Total: -65.47 3.54 -61.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292168968.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.241 kcal (2) G-P(sol) polarization free energy of solvation -65.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds