Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48501 * 109.47142 * 274.97019 * 3 2 1 5 5 H 1.48503 * 109.47116 * 34.97241 * 3 2 1 6 6 H 1.48503 * 109.47165 * 154.96837 * 3 2 1 7 7 C 1.39932 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99599 * 191.90825 * 7 2 1 9 9 C 1.41408 * 120.00062 * 11.90824 * 7 2 1 10 10 C 1.40785 * 120.20717 * 207.30524 * 9 7 2 11 11 C 1.37652 * 119.89556 * 179.97438 * 10 9 7 12 12 C 1.38515 * 120.32742 * 0.02562 * 11 10 9 13 13 C 1.39308 * 120.42186 * 359.97438 * 12 11 10 14 14 N 1.39735 * 119.94937 * 179.97438 * 13 12 11 15 15 C 1.39067 * 119.99876 * 328.35586 * 14 13 12 16 16 C 1.39248 * 119.92584 * 334.32404 * 15 14 13 17 17 C 1.37108 * 120.07026 * 179.72072 * 16 15 14 18 18 C 1.39869 * 119.92248 * 0.56954 * 17 16 15 19 19 C 1.47385 * 120.07351 * 179.67947 * 18 17 16 20 20 O 1.21514 * 120.00515 * 180.02562 * 19 18 17 21 21 O 1.34771 * 119.99416 * 0.02562 * 19 18 17 22 22 C 1.39860 * 119.85443 * 359.69920 * 18 17 16 23 23 C 1.37104 * 119.92792 * 0.02562 * 22 18 17 24 24 C 1.38334 * 120.09473 * 0.25568 * 13 12 11 25 25 H 0.97000 * 120.00072 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.05024 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.83534 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.78656 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99627 * 148.63601 * 14 13 12 30 30 H 1.07996 * 119.96384 * 359.96750 * 16 15 14 31 31 H 1.07994 * 120.04234 * 180.26863 * 17 16 15 32 32 H 0.96704 * 116.99191 * 180.02562 * 21 19 18 33 33 H 1.08004 * 120.03550 * 179.97438 * 22 18 17 34 34 H 1.07995 * 119.96118 * 180.02562 * 23 22 18 35 35 H 1.08001 * 120.15977 * 179.72867 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3847 2.1071 -1.3948 5 1 1.4962 2.6200 0.8025 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2119 0.0005 8 1 3.0705 -1.2218 0.1935 9 6 1.3238 -2.4234 -0.2516 10 6 1.8075 -3.6340 0.2800 11 6 1.1361 -4.8095 0.0310 12 6 -0.0139 -4.8081 -0.7412 13 6 -0.5044 -3.6181 -1.2739 14 7 -1.6651 -3.6281 -2.0519 15 6 -1.9678 -4.7369 -2.8348 16 6 -0.9469 -5.5733 -3.2790 17 6 -1.2426 -6.6705 -4.0462 18 6 -2.5701 -6.9425 -4.3925 19 6 -2.8910 -8.1171 -5.2230 20 8 -4.0447 -8.3520 -5.5234 21 8 -1.9046 -8.9306 -5.6491 22 6 -3.5925 -6.0972 -3.9493 23 6 -3.2906 -5.0049 -3.1776 24 6 0.1591 -2.4273 -1.0386 25 1 -0.4850 0.8400 0.0004 26 1 2.7039 -3.6402 0.8823 27 1 1.5082 -5.7377 0.4389 28 1 -0.5335 -5.7356 -0.9314 29 1 -2.2576 -2.8601 -2.0490 30 1 0.0784 -5.3597 -3.0156 31 1 -0.4509 -7.3212 -4.3868 32 1 -2.1639 -9.6880 -6.1915 33 1 -4.6185 -6.3043 -4.2153 34 1 -4.0796 -4.3521 -2.8348 35 1 -0.2179 -1.5047 -1.4547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313406572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -48.185927 kcal Electronic energy + Delta-G solvation = -20486.226238 eV Core-core repulsion = 17220.226693 eV Total energy + Delta-G solvation = -3265.999545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32618 -39.28450 -37.57949 -36.02825 -35.05985 -33.49249 -31.05821 -30.22407 -29.64370 -27.73303 -25.43143 -23.91838 -22.71627 -21.23403 -21.03480 -20.10383 -18.08115 -17.73816 -17.28318 -16.72169 -15.93360 -15.52743 -15.01283 -14.81477 -14.52503 -14.17909 -13.59396 -13.49247 -13.23970 -13.03052 -12.58900 -12.49782 -12.22631 -11.81121 -11.57281 -11.36614 -11.21797 -11.03763 -10.85588 -10.64760 -10.52444 -10.15891 -9.85091 -9.69145 -9.31979 -8.91630 -8.19062 -7.51487 -6.92126 -6.57123 -4.51861 0.92014 1.59689 2.54995 2.72977 2.96034 3.01568 3.04903 3.12722 3.14061 3.80985 3.85566 4.01343 4.53743 4.95798 5.09455 5.24868 5.47117 5.52390 5.64320 5.75585 6.10144 6.13870 6.32633 6.38516 6.48786 6.49858 6.54056 6.64639 6.81092 6.93029 6.98765 7.15717 7.16180 7.54987 7.68091 7.80030 7.93488 7.96146 8.19837 8.21468 8.53733 8.77643 8.81517 10.10047 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.032543 B = 0.003428 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.198154 B = 8166.558946 C = 8595.024391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.126 3.874 10 C -0.232 4.232 11 C -0.076 4.076 12 C -0.263 4.263 13 C 0.158 3.842 14 N -0.669 5.669 15 C 0.255 3.745 16 C -0.188 4.188 17 C -0.021 4.021 18 C -0.203 4.203 19 C 0.534 3.466 20 O -0.533 6.533 21 O -0.516 6.516 22 C -0.010 4.010 23 C -0.208 4.208 24 C -0.186 4.186 25 H 0.280 0.720 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.407 0.593 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -7.680 -6.723 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.123 3.877 10 C -0.252 4.252 11 C -0.095 4.095 12 C -0.284 4.284 13 C 0.065 3.935 14 N -0.287 5.287 15 C 0.148 3.852 16 C -0.210 4.210 17 C -0.040 4.040 18 C -0.207 4.207 19 C 0.381 3.619 20 O -0.425 6.425 21 O -0.327 6.327 22 C -0.030 4.030 23 C -0.230 4.230 24 C -0.208 4.208 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.243 0.757 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.266 0.734 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.681 -7.232 -6.452 10.367 hybrid contribution -0.152 0.614 -0.221 0.670 sum -3.834 -6.618 -6.673 10.150 Atomic orbital electron populations 1.69785 1.07494 1.29079 1.36228 1.25905 0.94847 1.01345 0.92194 0.86239 0.80519 0.80511 0.79115 1.19385 1.20254 1.18543 1.19608 0.96354 0.90476 1.42539 0.90265 1.17403 0.90690 0.92183 0.87439 1.21055 1.03391 0.93201 1.07557 1.20375 0.95041 0.96626 0.97488 1.20220 1.02308 0.95583 1.10305 1.17635 0.86987 0.95215 0.93673 1.42339 1.25029 1.16570 1.44743 1.18195 0.92779 0.87216 0.86980 1.20985 0.99923 0.97643 1.02437 1.21050 0.95024 0.95020 0.92893 1.18687 0.95094 0.97910 1.08982 1.20918 0.82223 0.81896 0.76899 1.90848 1.21708 1.73292 1.56626 1.84606 1.41438 1.40215 1.66468 1.20739 0.98558 0.91418 0.92238 1.20540 0.94602 1.01073 1.06794 1.21136 0.99261 0.95522 1.04855 0.90943 0.88763 0.88912 0.88677 0.75736 0.84082 0.84909 0.73429 0.85045 0.85344 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.52 10.82 55.55 0.60 -18.92 16 2 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 3 Si 0.91 17.93 29.58 -169.99 -5.03 12.90 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.58 9.06 -37.74 -0.34 -11.92 16 8 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 9 C 0.13 3.16 5.56 -106.85 -0.59 2.56 16 10 C -0.23 -5.36 9.79 -38.83 -0.38 -5.74 16 11 C -0.08 -1.61 10.01 -39.69 -0.40 -2.01 16 12 C -0.26 -5.45 7.74 -39.08 -0.30 -5.75 16 13 C 0.16 3.36 5.89 -83.82 -0.49 2.86 16 14 N -0.67 -11.82 5.43 -8.45 -0.05 -11.87 16 15 C 0.25 4.08 6.04 -83.83 -0.51 3.57 16 16 C -0.19 -2.97 7.80 -39.62 -0.31 -3.27 16 17 C -0.02 -0.29 9.58 -39.38 -0.38 -0.66 16 18 C -0.20 -2.87 5.88 -104.96 -0.62 -3.48 16 19 C 0.53 7.21 8.26 34.45 0.28 7.50 16 20 O -0.53 -8.41 17.12 -19.28 -0.33 -8.74 16 21 O -0.52 -5.32 12.67 -40.69 -0.52 -5.84 16 22 C -0.01 -0.14 9.56 -39.39 -0.38 -0.52 16 23 C -0.21 -2.89 9.90 -39.62 -0.39 -3.29 16 24 C -0.19 -4.44 8.57 -38.67 -0.33 -4.78 16 25 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 26 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.10 1.85 6.55 -52.49 -0.34 1.51 16 29 H 0.41 6.55 8.88 -40.82 -0.36 6.18 16 30 H 0.14 2.40 6.31 -52.49 -0.33 2.07 16 31 H 0.13 1.61 7.60 -52.49 -0.40 1.21 16 32 H 0.41 2.26 9.11 45.56 0.42 2.67 16 33 H 0.13 1.65 7.64 -52.48 -0.40 1.25 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.13 3.09 6.17 -52.49 -0.32 2.77 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -28.05 308.43 -8.46 -36.51 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -2.56 Total: 14.56 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -5.23 Total: -23.24 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.56 Total: -30.79 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.85 Total: -14.58 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.05 -8.46 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.678 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds