Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 S 1.81402 * 109.47207 * 180.02562 * 7 6 5 9 9 O 1.42102 * 110.53959 * 291.62233 * 8 7 6 10 10 O 1.42093 * 110.54469 * 68.37712 * 8 7 6 11 11 N 1.65598 * 104.44987 * 180.02562 * 8 7 6 12 12 C 1.46501 * 120.00054 * 64.99780 * 11 8 7 13 13 C 1.50702 * 109.47020 * 164.99969 * 12 11 8 14 14 H 1.07997 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99892 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00026 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99673 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47249 * 60.00378 * 17 15 13 19 19 H 1.48509 * 109.47070 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47251 * 299.99904 * 17 15 13 21 21 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 22 22 C 1.38234 * 120.00033 * 0.49775 * 21 5 4 23 23 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 24 24 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 25 25 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 26 26 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 29 29 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 30 30 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 31 31 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 32 32 H 0.97000 * 120.00085 * 244.99599 * 11 8 7 33 33 H 1.08998 * 109.47490 * 284.99888 * 12 11 8 34 34 H 1.09001 * 109.47353 * 45.00459 * 12 11 8 35 35 H 0.97005 * 120.00111 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.99934 * 180.25938 * 21 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 16 8.1081 -0.0020 1.4235 9 8 8.6053 -1.2379 0.9288 10 8 8.6045 1.2361 0.9338 11 7 8.5274 -0.0058 3.0255 12 6 8.1946 -1.1578 3.8671 13 6 8.9842 -1.0884 5.1488 14 1 9.6655 -0.2680 5.3196 15 6 8.8361 -2.0718 6.1039 16 7 8.0062 -3.0705 5.8961 17 14 9.8155 -1.9861 7.6923 18 1 9.4802 -0.7322 8.4136 19 1 9.4781 -3.1539 8.5455 20 1 11.2673 -2.0047 7.3803 21 6 3.5805 -1.1972 0.0010 22 6 2.1982 -1.1972 0.0009 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1324 -0.0004 27 1 4.1205 2.1325 0.0001 28 1 6.1400 -0.8891 -0.5270 29 1 6.1401 0.8909 -0.5236 30 1 5.9328 0.8863 1.9473 31 1 5.9327 -0.8937 1.9440 32 1 8.9934 0.7548 3.4067 33 1 7.1290 -1.1450 4.0958 34 1 8.4416 -2.0781 3.3377 35 1 7.9017 -3.7622 6.5682 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337171208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -92.731599 kcal Electronic energy + Delta-G solvation = -19431.125006 eV Core-core repulsion = 16298.637767 eV Total energy + Delta-G solvation = -3132.487239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39411 -38.12848 -37.00681 -36.44865 -35.86463 -34.12456 -32.21859 -31.82170 -28.72086 -27.86448 -24.47819 -24.43699 -23.63424 -21.59168 -20.28567 -19.22175 -18.08467 -17.39876 -17.26428 -16.84852 -16.69035 -16.33137 -15.92682 -15.35427 -14.87069 -14.69667 -14.53437 -14.26443 -14.09441 -13.94443 -13.84609 -13.57497 -13.20349 -13.08929 -13.05619 -12.74026 -12.63291 -12.54451 -12.38396 -12.28592 -12.07655 -11.77783 -11.57032 -11.42857 -10.81344 -10.06258 -9.83715 -9.40564 -8.25786 -6.37640 -0.66037 0.38405 0.49211 1.44228 1.46770 1.54478 1.89683 2.41145 2.72735 2.89109 3.09052 3.29260 3.68973 3.76019 3.82815 4.02720 4.10014 4.15609 4.36604 4.44799 4.58409 4.60643 4.67860 4.84352 4.86137 4.87887 4.98359 5.19672 5.26728 5.29586 5.31478 5.49914 5.67900 5.70527 5.73689 5.99748 6.12251 6.32486 6.76744 7.32067 8.85048 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.003909 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.861022 B = 7162.150811 C = 8168.154911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.094 4.094 6 C -0.077 4.077 7 C -0.603 4.603 8 S 2.620 3.380 9 O -1.001 7.001 10 O -0.990 6.990 11 N -1.110 6.110 12 C 0.253 3.747 13 C -0.553 4.553 14 H 0.071 0.929 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.271 1.271 21 C -0.128 4.128 22 C -0.130 4.130 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.143 0.857 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.415 0.585 33 H 0.019 0.981 34 H 0.010 0.990 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.353 7.634 -11.060 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.095 4.095 6 C -0.116 4.116 7 C -0.735 4.735 8 S 2.716 3.284 9 O -0.991 6.991 10 O -0.981 6.981 11 N -0.870 5.870 12 C 0.128 3.872 13 C -0.592 4.592 14 H 0.090 0.910 15 C -0.192 4.192 16 N -0.564 5.564 17 Si 0.796 3.204 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.146 4.146 22 C -0.148 4.148 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.160 0.840 27 H 0.156 0.844 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.249 0.751 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.880 7.301 -11.776 19.612 hybrid contribution 0.238 -0.128 1.406 1.432 sum -13.641 7.173 -10.370 18.576 Atomic orbital electron populations 1.20832 0.89373 1.03564 1.03117 1.20323 0.97605 0.93053 0.98917 1.21329 0.93986 0.98561 1.00610 1.21335 0.94893 0.97878 0.99853 1.19672 0.94165 0.94087 1.01569 1.20426 0.93667 1.05367 0.92123 1.30463 1.23682 1.13342 1.06006 1.04386 0.78651 0.72776 0.72572 1.93527 1.78687 1.47139 1.79766 1.93512 1.79511 1.45520 1.79559 1.55332 1.73762 1.28693 1.29213 1.18713 0.95593 0.82937 0.89931 1.21613 1.25565 1.09900 1.02110 0.91039 1.25881 0.96382 0.94560 1.02338 1.70033 1.37261 1.12477 1.36659 0.85402 0.78778 0.78009 0.78228 1.18836 1.20720 1.19664 1.21323 0.95057 0.98035 1.00190 1.21298 0.93904 0.98716 1.00867 0.90166 0.91013 0.90614 0.83951 0.84372 0.89113 0.87966 0.82815 0.84645 0.75079 0.96276 0.97245 0.92220 0.85522 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 2 C -0.10 -1.84 5.88 -19.86 -0.12 -1.95 16 3 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 4 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 5 C -0.09 -2.18 5.13 -19.87 -0.10 -2.28 16 6 C -0.08 -1.82 5.35 29.84 0.16 -1.66 16 7 C -0.60 -16.18 6.05 71.98 0.44 -15.74 16 8 S 2.62 92.29 5.46 -56.49 -0.31 91.98 16 9 O -1.00 -43.43 17.49 -127.65 -2.23 -45.67 16 10 O -0.99 -36.90 18.08 -127.65 -2.31 -39.21 16 11 N -1.11 -44.68 5.88 -190.79 -1.12 -45.80 16 12 C 0.25 12.60 5.88 85.63 0.50 13.10 16 13 C -0.55 -29.79 9.27 25.60 0.24 -29.55 16 14 H 0.07 3.65 7.65 -2.91 -0.02 3.63 16 15 C 0.01 0.46 5.46 84.66 0.46 0.92 16 16 N -0.93 -53.10 13.29 21.45 0.28 -52.81 16 17 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 22 C -0.13 -2.66 9.70 22.27 0.22 -2.45 16 23 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 25 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 26 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 28 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 29 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 30 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.41 15.45 8.50 -96.75 -0.82 14.62 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.01 0.53 7.69 -2.39 -0.02 0.51 16 35 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 36 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -70.45 332.21 -0.26 -70.71 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.24 Total: 23.91 kcal Atomic # 6 Polarization: -50.64 SS G_CDS: 3.16 Total: -47.49 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -0.84 Total: -98.62 kcal Atomic # 8 Polarization: -80.33 SS G_CDS: -4.54 Total: -84.87 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 92.29 SS G_CDS: -0.31 Total: 91.98 kcal Total: -70.45 -0.26 -70.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337171208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.019 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds