Wall clock time and date at job start Tue Mar 31 2020 06:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38261 * 120.00108 * 2 1 4 4 C 1.38208 * 120.00123 * 180.23121 * 3 2 1 5 5 C 1.38261 * 119.99527 * 359.81246 * 4 3 2 6 6 C 1.38205 * 120.00406 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00066 * 179.79578 * 2 1 3 8 8 C 1.50706 * 120.00088 * 359.97438 * 7 2 1 9 9 S 1.81400 * 109.47256 * 269.73400 * 8 7 2 10 10 O 1.42099 * 110.53958 * 291.62078 * 9 8 7 11 11 O 1.42095 * 110.54467 * 68.37114 * 9 8 7 12 12 N 1.65598 * 104.44743 * 179.97438 * 9 8 7 13 13 C 1.46502 * 120.00261 * 64.99888 * 12 9 8 14 14 C 1.53001 * 109.46991 * 164.99826 * 13 12 9 15 15 C 1.50707 * 109.46623 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00211 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99495 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00463 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99829 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46766 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47378 * 119.99475 * 19 17 15 22 22 H 1.48499 * 109.46950 * 239.99650 * 19 17 15 23 23 H 1.08997 * 109.47203 * 270.20932 * 1 2 3 24 24 H 1.09004 * 109.47060 * 30.21140 * 1 2 3 25 25 H 1.08997 * 109.46864 * 150.20338 * 1 2 3 26 26 H 1.08001 * 119.99775 * 0.06619 * 3 2 1 27 27 H 1.08001 * 120.00514 * 179.83847 * 4 3 2 28 28 H 1.08003 * 119.99532 * 180.02562 * 5 4 3 29 29 H 1.08009 * 120.00262 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.46953 * 29.72877 * 8 7 2 31 31 H 1.09000 * 109.47318 * 149.72475 * 8 7 2 32 32 H 0.96999 * 119.99703 * 244.99620 * 12 9 8 33 33 H 1.08997 * 109.47154 * 285.00080 * 13 12 9 34 34 H 1.09002 * 109.46963 * 44.99975 * 13 12 9 35 35 H 1.09002 * 109.47327 * 299.99637 * 14 13 12 36 36 H 1.08993 * 109.47356 * 60.00257 * 14 13 12 37 37 H 0.97000 * 120.00448 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1969 -0.0013 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5021 0.0095 9 16 1.1498 -3.0233 1.7218 10 8 2.3719 -3.3845 2.3505 11 8 0.2295 -2.1474 2.3582 12 7 0.3238 -4.4517 1.5825 13 6 0.9750 -5.6191 0.9829 14 6 0.1648 -6.8764 1.3048 15 6 0.8351 -8.0773 0.6884 16 1 1.7474 -7.9557 0.1233 17 6 0.2830 -9.3309 0.8451 18 7 -0.8281 -9.4789 1.5329 19 14 1.1142 -10.8196 0.0818 20 1 2.3411 -10.3880 -0.6351 21 1 1.4781 -11.7852 1.1496 22 1 0.1839 -11.4687 -0.8765 23 1 -0.3633 0.0038 1.0276 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3633 -0.8918 -0.5107 26 1 1.6583 2.1327 0.0011 27 1 4.1205 2.1326 -0.0075 28 1 5.3517 -0.0001 -0.0091 29 1 4.1206 -2.1324 -0.0024 30 1 0.4899 -2.3725 -0.5002 31 1 2.0313 -3.2625 -0.5059 32 1 -0.5912 -4.5156 1.8980 33 1 1.0301 -5.4891 -0.0979 34 1 1.9816 -5.7217 1.3883 35 1 0.1098 -7.0064 2.3856 36 1 -0.8417 -6.7738 0.8994 37 1 -1.2163 -10.3609 1.6434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343988861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:16 Heat of formation + Delta-G solvation = -88.280305 kcal Electronic energy + Delta-G solvation = -19817.976795 eV Core-core repulsion = 16685.682578 eV Total energy + Delta-G solvation = -3132.294217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52516 -38.22824 -37.11474 -36.93859 -34.72587 -34.50277 -33.19660 -30.99833 -28.85683 -27.50417 -26.40865 -23.23980 -22.94136 -21.97716 -20.36172 -18.92402 -18.21874 -17.81368 -17.41535 -16.97075 -16.58818 -16.41397 -15.93318 -15.53889 -15.48169 -14.68208 -14.41479 -14.19178 -14.03461 -13.82283 -13.37193 -13.33385 -13.25035 -13.19023 -13.11338 -12.98250 -12.93049 -12.41028 -12.37413 -12.17278 -11.94370 -11.92625 -11.49713 -11.27680 -10.62995 -10.33789 -9.77820 -9.56309 -8.20436 -6.31341 -0.87991 0.36603 0.39408 1.43449 1.44677 1.57198 1.75670 2.43262 2.65946 2.83248 3.14605 3.15060 3.36677 3.75000 3.96126 3.99951 4.18335 4.22377 4.36215 4.45609 4.55049 4.60093 4.77278 4.80614 4.84645 4.88996 4.98846 5.06062 5.29636 5.45121 5.50487 5.53319 5.56986 5.63479 5.81533 6.01980 6.03276 6.23033 6.85193 7.38289 8.91910 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.030707 B = 0.003650 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.613175 B = 7669.107874 C = 8059.444672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.108 4.108 5 C -0.134 4.134 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.568 4.568 9 S 2.609 3.391 10 O -0.994 6.994 11 O -0.982 6.982 12 N -1.118 6.118 13 C 0.126 3.874 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.258 1.258 21 H -0.283 1.283 22 H -0.278 1.278 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.418 0.582 33 H 0.082 0.918 34 H 0.063 0.937 35 H -0.005 1.005 36 H 0.011 0.989 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 21.421 -7.105 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.127 4.127 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.120 4.120 8 C -0.699 4.699 9 S 2.707 3.293 10 O -0.984 6.984 11 O -0.972 6.972 12 N -0.877 5.877 13 C 0.000 4.000 14 C -0.021 4.021 15 C -0.581 4.581 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.181 1.181 21 H -0.209 1.209 22 H -0.204 1.204 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.169 0.831 27 H 0.173 0.827 28 H 0.167 0.833 29 H 0.153 0.847 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.013 0.987 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.411 21.674 -6.269 23.456 hybrid contribution -0.390 -1.393 -0.492 1.528 sum 6.021 20.281 -6.762 22.210 Atomic orbital electron populations 1.21146 0.90062 1.04483 1.03662 1.20179 0.97331 0.92796 0.98214 1.21423 0.94925 0.97850 1.00505 1.21651 0.94370 0.99227 0.97425 1.21507 1.01510 0.91959 1.00162 1.21472 0.93267 1.00269 0.98997 1.19029 0.94095 0.92128 1.06725 1.29510 1.11905 1.04804 1.23651 1.04920 0.73340 0.72720 0.78363 1.93530 1.48392 1.82520 1.73966 1.93518 1.63424 1.65864 1.74388 1.55483 1.27928 1.26144 1.78153 1.21400 0.96253 0.84812 0.97538 1.19173 0.95406 0.91765 0.95748 1.21626 1.10201 0.92687 1.33603 0.91114 1.25961 0.95565 1.02532 0.95727 1.70096 1.21077 1.24173 1.41858 0.85376 0.78857 0.78552 0.78123 1.18150 1.20891 1.20401 0.90387 0.88797 0.90652 0.83144 0.82731 0.83319 0.84744 0.81434 0.82082 0.74708 0.90007 0.91901 0.98688 0.97093 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.51 71.24 0.68 -1.83 16 2 C -0.08 -1.78 5.88 -19.86 -0.12 -1.90 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 4 C -0.11 -1.71 10.05 22.27 0.22 -1.49 16 5 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 6 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 7 C -0.12 -2.75 5.14 -19.87 -0.10 -2.85 16 8 C -0.57 -12.61 5.80 71.24 0.41 -12.20 16 9 S 2.61 80.84 5.44 -56.49 -0.31 80.53 16 10 O -0.99 -38.24 17.50 -127.65 -2.23 -40.48 16 11 O -0.98 -33.54 17.48 -127.65 -2.23 -35.77 16 12 N -1.12 -37.06 5.89 -187.48 -1.10 -38.16 16 13 C 0.13 4.79 6.07 86.38 0.52 5.32 16 14 C 0.02 0.88 5.12 29.85 0.15 1.04 16 15 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 0.02 5.46 84.66 0.46 0.48 16 18 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 19 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H 0.08 1.64 7.63 -2.39 -0.02 1.62 16 24 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 25 H 0.07 1.24 5.94 -2.39 -0.01 1.23 16 26 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 27 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.17 2.89 5.94 -2.39 -0.01 2.87 16 31 H 0.16 2.99 8.09 -2.39 -0.02 2.97 16 32 H 0.42 13.34 8.62 -96.75 -0.83 12.51 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.06 2.47 7.70 -2.39 -0.02 2.45 16 35 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -73.12 326.73 -0.20 -73.32 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.24 Total: 19.84 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 3.12 Total: -49.20 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -0.82 Total: -93.11 kcal Atomic # 8 Polarization: -71.78 SS G_CDS: -4.46 Total: -76.25 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 80.84 SS G_CDS: -0.31 Total: 80.53 kcal Total: -73.12 -0.20 -73.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343988861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.957 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds