Wall clock time and date at job start Tue Mar 31 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39879 * 119.72015 * 2 1 4 4 C 1.30356 * 121.03081 * 179.72518 * 3 2 1 5 5 C 1.41121 * 120.41039 * 0.53831 * 4 3 2 6 6 N 1.38481 * 120.29773 * 179.72337 * 5 4 3 7 7 C 1.46501 * 119.99964 * 5.40702 * 6 5 4 8 8 C 1.53004 * 109.46757 * 186.10289 * 7 6 5 9 9 C 1.50701 * 115.55243 * 39.94810 * 8 7 6 10 10 H 1.08007 * 119.99837 * 265.61573 * 9 8 7 11 11 C 1.37874 * 120.00035 * 85.61317 * 9 8 7 12 12 N 1.31509 * 120.00194 * 350.82752 * 11 9 8 13 13 Si 1.86799 * 119.99751 * 170.82547 * 11 9 8 14 14 H 1.48500 * 109.47484 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46985 * 120.00338 * 13 11 9 16 16 H 1.48501 * 109.47223 * 239.99663 * 13 11 9 17 17 C 1.53000 * 117.49502 * 254.24013 * 8 7 6 18 18 C 1.52996 * 117.49756 * 185.61815 * 8 7 6 19 19 C 1.38301 * 119.39776 * 359.45022 * 5 4 3 20 20 Cl 1.73603 * 120.49028 * 180.29369 * 19 5 4 21 21 C 1.34757 * 119.72182 * 179.97438 * 2 1 3 22 22 O 1.22153 * 120.20885 * 359.97172 * 21 2 1 23 23 H 1.08996 * 109.46851 * 270.01868 * 1 2 3 24 24 H 1.09007 * 109.47044 * 30.01870 * 1 2 3 25 25 H 1.08997 * 109.47524 * 150.01852 * 1 2 3 26 26 H 1.07996 * 119.79421 * 180.26548 * 4 3 2 27 27 H 0.97003 * 119.99767 * 185.40824 * 6 5 4 28 28 H 1.08996 * 109.47199 * 66.10467 * 7 6 5 29 29 H 1.08999 * 109.46844 * 306.09759 * 7 6 5 30 30 H 0.96999 * 120.00400 * 185.01425 * 12 11 9 31 31 H 1.08996 * 117.50191 * 359.97438 * 17 8 7 32 32 H 1.09006 * 117.49790 * 145.02349 * 17 8 7 33 33 H 1.09004 * 117.50159 * 214.97839 * 18 8 7 34 34 H 1.09006 * 117.49986 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1585 1.2148 0.0000 4 6 3.4617 1.2446 0.0054 5 6 4.2037 0.0442 -0.0001 6 7 5.5881 0.0787 -0.0002 7 6 6.2890 1.3590 0.1250 8 6 7.7921 1.1373 -0.0549 9 6 8.1801 0.1532 -1.1283 10 1 8.3608 -0.8806 -0.8734 11 6 8.3044 0.5727 -2.4358 12 7 7.9126 1.7803 -2.7790 13 14 9.0292 -0.5742 -3.7197 14 1 9.3887 -1.8665 -3.0827 15 1 8.0293 -0.8125 -4.7916 16 1 10.2453 0.0444 -4.3061 17 6 8.6703 1.2012 1.1964 18 6 8.7151 2.3363 0.1713 19 6 3.5357 -1.1668 0.0003 20 17 4.4203 -2.6606 0.0013 21 6 2.1331 -1.1703 0.0005 22 8 1.5211 -2.2274 0.0015 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 3.9767 2.1938 0.0096 27 1 6.0937 -0.7450 -0.0831 28 1 6.0996 1.7820 1.1115 29 1 5.9290 2.0466 -0.6404 30 1 7.9320 2.0501 -3.7105 31 1 8.1773 1.4017 2.1475 32 1 9.5289 0.5314 1.2434 33 1 9.6033 2.4132 -0.4559 34 1 8.2515 3.2833 0.4479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362359708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:43 Heat of formation + Delta-G solvation = 47.574757 kcal Electronic energy + Delta-G solvation = -19984.954217 eV Core-core repulsion = 16752.967068 eV Total energy + Delta-G solvation = -3231.987149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63054 -38.02729 -36.84523 -36.25305 -35.08792 -32.66097 -32.18296 -30.44336 -27.47458 -25.87545 -25.40988 -24.03317 -21.96768 -21.30606 -19.72469 -18.10671 -17.52838 -16.81657 -16.16637 -15.93577 -15.20372 -14.87230 -14.60262 -14.03298 -13.97633 -13.71091 -13.15587 -12.95644 -12.82266 -12.51960 -12.25668 -11.80962 -11.66582 -11.18034 -11.12380 -11.06419 -10.65034 -10.52304 -10.50393 -10.19420 -9.87933 -9.58025 -9.12011 -8.68077 -8.62865 -8.38458 -7.34764 -6.28763 -4.36995 0.74512 2.09256 2.18982 2.72129 3.15807 3.26229 3.29225 3.61326 3.66670 4.22615 4.36084 4.89278 4.98466 5.03540 5.08162 5.35765 5.39111 5.64138 5.68282 5.82127 5.96299 6.01229 6.11012 6.16897 6.21773 6.46521 6.56391 6.82931 7.01647 7.22706 7.46274 7.63831 7.73612 7.94124 8.13631 8.21676 8.65404 9.32482 10.78848 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.005595 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.500182 B = 5003.189489 C = 5454.549621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.433 5.433 3 N -0.200 5.200 4 C 0.075 3.925 5 C 0.260 3.740 6 N -0.653 5.653 7 C 0.142 3.858 8 C 0.025 3.975 9 C -0.507 4.507 10 H 0.062 0.938 11 C 0.081 3.919 12 N -0.871 5.871 13 Si 0.887 3.113 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.208 4.208 18 C -0.148 4.148 19 C -0.272 4.272 20 Cl -0.037 7.037 21 C 0.536 3.464 22 O -0.551 6.551 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.199 0.801 27 H 0.420 0.580 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 1.981 5.521 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.255 5.255 3 N -0.013 5.013 4 C -0.128 4.128 5 C 0.134 3.866 6 N -0.272 5.272 7 C 0.019 3.981 8 C 0.024 3.976 9 C -0.545 4.545 10 H 0.080 0.920 11 C -0.124 4.124 12 N -0.506 5.506 13 Si 0.714 3.286 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.246 4.246 18 C -0.186 4.186 19 C -0.320 4.320 20 Cl -0.009 7.009 21 C 0.335 3.665 22 O -0.430 6.430 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.216 0.784 27 H 0.261 0.739 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.733 2.126 5.382 10.476 hybrid contribution 1.450 -1.391 -0.940 2.218 sum -7.283 0.735 4.442 8.563 Atomic orbital electron populations 1.21709 0.75100 1.04147 1.02925 1.49352 1.07876 1.01755 1.66516 1.74954 1.09156 1.07818 1.09390 1.23841 0.89201 0.98539 1.01239 1.18802 0.86637 0.92276 0.88901 1.45324 1.01018 1.12701 1.68196 1.21367 0.94707 0.83399 0.98631 1.18940 0.86578 0.98156 0.93930 1.20320 1.48631 0.94484 0.91032 0.91956 1.24937 0.94201 0.94851 0.98441 1.69939 1.44935 1.18129 1.17590 0.86608 0.79240 0.81177 0.81558 1.19494 1.20849 1.20745 1.23119 1.04243 1.03962 0.93235 1.22519 1.03054 0.91745 1.01268 1.20729 0.91466 0.87173 1.32591 1.98300 1.73481 1.31455 1.97676 1.16421 0.87422 0.83712 0.78942 1.90946 1.69475 1.28700 1.53900 0.91559 0.89808 0.89144 0.78412 0.73949 0.93515 0.90429 0.92693 0.91386 0.90148 0.89739 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 10.72 59.85 0.64 1.82 16 2 N -0.43 -6.69 3.91 -70.38 -0.27 -6.96 16 3 N -0.20 -2.87 11.53 30.81 0.36 -2.51 16 4 C 0.08 1.06 10.56 -17.08 -0.18 0.88 16 5 C 0.26 4.32 6.66 -83.74 -0.56 3.76 16 6 N -0.65 -11.50 5.36 -58.51 -0.31 -11.82 16 7 C 0.14 2.50 5.21 -4.04 -0.02 2.48 16 8 C 0.02 0.51 1.70 -155.66 -0.26 0.24 16 9 C -0.51 -11.96 7.52 -34.44 -0.26 -12.22 16 10 H 0.06 1.50 7.83 -52.48 -0.41 1.09 16 11 C 0.08 1.99 5.37 -17.82 -0.10 1.89 16 12 N -0.87 -21.91 12.99 55.43 0.72 -21.19 16 13 Si 0.89 19.74 29.55 -169.99 -5.02 14.72 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.21 -3.84 9.88 -26.73 -0.26 -4.11 16 18 C -0.15 -2.93 9.51 -26.73 -0.25 -3.18 16 19 C -0.27 -4.97 6.39 -38.80 -0.25 -5.22 16 20 Cl -0.04 -0.69 27.26 -51.86 -1.41 -2.10 16 21 C 0.54 9.90 7.48 -15.51 -0.12 9.78 16 22 O -0.55 -11.39 16.19 4.78 0.08 -11.31 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.09 1.06 7.41 -51.93 -0.38 0.68 16 26 H 0.20 2.24 6.63 -52.49 -0.35 1.89 16 27 H 0.42 7.98 6.30 -40.82 -0.26 7.72 16 28 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 29 H 0.08 1.42 7.39 -51.93 -0.38 1.03 16 30 H 0.26 6.45 8.32 -40.82 -0.34 6.11 16 31 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -27.84 309.72 -6.69 -34.53 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.87 Total: 5.86 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.62 Total: -3.88 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.49 Total: -42.48 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.41 Total: -2.10 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.84 -6.69 -34.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362359708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.100 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds