Wall clock time and date at job start Tue Mar 31 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39879 * 119.72015 * 2 1 4 4 C 1.30356 * 121.03081 * 179.72518 * 3 2 1 5 5 C 1.41121 * 120.41039 * 0.53831 * 4 3 2 6 6 N 1.38481 * 120.29773 * 179.72337 * 5 4 3 7 7 C 1.46501 * 119.99964 * 5.40702 * 6 5 4 8 8 C 1.53004 * 109.46757 * 186.10289 * 7 6 5 9 9 C 1.50701 * 115.55243 * 39.94810 * 8 7 6 10 10 H 1.08007 * 119.99837 * 265.61573 * 9 8 7 11 11 C 1.37874 * 120.00035 * 85.61317 * 9 8 7 12 12 N 1.31509 * 120.00194 * 350.82752 * 11 9 8 13 13 Si 1.86799 * 119.99751 * 170.82547 * 11 9 8 14 14 H 1.48500 * 109.47484 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46985 * 120.00338 * 13 11 9 16 16 H 1.48501 * 109.47223 * 239.99663 * 13 11 9 17 17 C 1.53000 * 117.49502 * 254.24013 * 8 7 6 18 18 C 1.52996 * 117.49756 * 185.61815 * 8 7 6 19 19 C 1.38301 * 119.39776 * 359.45022 * 5 4 3 20 20 Cl 1.73603 * 120.49028 * 180.29369 * 19 5 4 21 21 C 1.34757 * 119.72182 * 179.97438 * 2 1 3 22 22 O 1.22153 * 120.20885 * 359.97172 * 21 2 1 23 23 H 1.08996 * 109.46851 * 270.01868 * 1 2 3 24 24 H 1.09007 * 109.47044 * 30.01870 * 1 2 3 25 25 H 1.08997 * 109.47524 * 150.01852 * 1 2 3 26 26 H 1.07996 * 119.79421 * 180.26548 * 4 3 2 27 27 H 0.97003 * 119.99767 * 185.40824 * 6 5 4 28 28 H 1.08996 * 109.47199 * 66.10467 * 7 6 5 29 29 H 1.08999 * 109.46844 * 306.09759 * 7 6 5 30 30 H 0.96999 * 120.00400 * 185.01425 * 12 11 9 31 31 H 1.08996 * 117.50191 * 359.97438 * 17 8 7 32 32 H 1.09006 * 117.49790 * 145.02349 * 17 8 7 33 33 H 1.09004 * 117.50159 * 214.97839 * 18 8 7 34 34 H 1.09006 * 117.49986 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1585 1.2148 0.0000 4 6 3.4617 1.2446 0.0054 5 6 4.2037 0.0442 -0.0001 6 7 5.5881 0.0787 -0.0002 7 6 6.2890 1.3590 0.1250 8 6 7.7921 1.1373 -0.0549 9 6 8.1801 0.1532 -1.1283 10 1 8.3608 -0.8806 -0.8734 11 6 8.3044 0.5727 -2.4358 12 7 7.9126 1.7803 -2.7790 13 14 9.0292 -0.5742 -3.7197 14 1 9.3887 -1.8665 -3.0827 15 1 8.0293 -0.8125 -4.7916 16 1 10.2453 0.0444 -4.3061 17 6 8.6703 1.2012 1.1964 18 6 8.7151 2.3363 0.1713 19 6 3.5357 -1.1668 0.0003 20 17 4.4203 -2.6606 0.0013 21 6 2.1331 -1.1703 0.0005 22 8 1.5211 -2.2274 0.0015 23 1 -0.3633 0.0003 1.0276 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 3.9767 2.1938 0.0096 27 1 6.0937 -0.7450 -0.0831 28 1 6.0996 1.7820 1.1115 29 1 5.9290 2.0466 -0.6404 30 1 7.9320 2.0501 -3.7105 31 1 8.1773 1.4017 2.1475 32 1 9.5289 0.5314 1.2434 33 1 9.6033 2.4132 -0.4559 34 1 8.2515 3.2833 0.4479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362359708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:42 Heat of formation + Delta-G solvation = 30.637869 kcal Electronic energy + Delta-G solvation = -19985.688655 eV Core-core repulsion = 16752.967068 eV Total energy + Delta-G solvation = -3232.721587 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90849 -39.44631 -38.26106 -37.63287 -36.46367 -34.02225 -33.83637 -31.78198 -28.67847 -27.51773 -26.81915 -25.26990 -23.27046 -22.80719 -21.31061 -19.48843 -18.71790 -18.18290 -17.80589 -17.17600 -16.73908 -16.44975 -16.03017 -15.48152 -15.30070 -15.03925 -14.49421 -14.27240 -14.23778 -13.57122 -13.50962 -13.39995 -12.98536 -12.95116 -12.86261 -12.45065 -12.36155 -12.00984 -11.87888 -11.59323 -11.45421 -10.99032 -10.80536 -10.44671 -9.99087 -9.82335 -8.73888 -8.14980 -6.23469 -0.51430 0.81449 0.99591 1.35483 1.42103 1.43583 1.48959 2.22811 2.34841 2.40523 3.14488 3.19623 3.51001 3.70347 3.79217 4.21459 4.43941 4.52542 4.54308 4.57966 4.67647 4.73133 4.78867 4.84679 4.97914 5.06286 5.09468 5.32611 5.51579 5.69741 5.76368 6.06436 6.34725 6.43876 6.58702 6.81859 6.88954 7.46048 8.91473 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.005595 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.500182 B = 5003.189489 C = 5454.549621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.433 5.433 3 N -0.188 5.188 4 C 0.079 3.921 5 C 0.270 3.730 6 N -0.656 5.656 7 C 0.151 3.849 8 C -0.001 4.001 9 C -0.508 4.508 10 H 0.049 0.951 11 C 0.046 3.954 12 N -0.890 5.890 13 Si 0.925 3.075 14 H -0.273 1.273 15 H -0.288 1.288 16 H -0.283 1.283 17 C -0.189 4.189 18 C -0.150 4.150 19 C -0.297 4.297 20 Cl -0.049 7.049 21 C 0.528 3.472 22 O -0.584 6.584 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.231 0.769 27 H 0.412 0.588 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.260 0.740 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 3.454 6.554 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.254 5.254 3 N -0.001 5.001 4 C -0.124 4.124 5 C 0.144 3.856 6 N -0.275 5.275 7 C 0.028 3.972 8 C -0.002 4.002 9 C -0.546 4.546 10 H 0.067 0.933 11 C -0.157 4.157 12 N -0.526 5.526 13 Si 0.752 3.248 14 H -0.198 1.198 15 H -0.215 1.215 16 H -0.209 1.209 17 C -0.226 4.226 18 C -0.188 4.188 19 C -0.344 4.344 20 Cl -0.021 7.021 21 C 0.327 3.673 22 O -0.467 6.467 23 H 0.101 0.899 24 H 0.129 0.871 25 H 0.102 0.898 26 H 0.247 0.753 27 H 0.251 0.749 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.418 3.626 6.420 11.961 hybrid contribution 1.698 -1.830 -1.235 2.785 sum -7.719 1.796 5.186 9.471 Atomic orbital electron populations 1.22010 0.72914 1.05173 1.04392 1.49564 1.09264 1.01216 1.65378 1.75039 1.09174 1.06838 1.09057 1.24299 0.88968 0.98697 1.00458 1.18956 0.86252 0.92645 0.87772 1.45337 1.01382 1.12488 1.68256 1.21310 0.92360 0.83129 1.00426 1.19064 0.88644 0.98088 0.94406 1.20516 1.47527 0.94588 0.91921 0.93323 1.25348 0.94951 0.95668 0.99693 1.69979 1.46363 1.18817 1.17471 0.86028 0.78490 0.80083 0.80165 1.19770 1.21470 1.20877 1.23129 1.03285 1.02452 0.93733 1.22453 1.01953 0.92867 1.01553 1.20941 0.91828 0.87411 1.34222 1.98286 1.73679 1.32317 1.97829 1.16550 0.87561 0.84202 0.78980 1.90915 1.70082 1.29972 1.55761 0.89884 0.87122 0.89792 0.75274 0.74871 0.89882 0.90959 0.93016 0.88323 0.91054 0.92550 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.98 10.72 127.77 1.37 3.35 16 2 N -0.43 -12.57 3.91 -494.63 -1.93 -14.50 16 3 N -0.19 -4.85 11.53 -56.44 -0.65 -5.50 16 4 C 0.08 1.98 10.56 85.62 0.90 2.88 16 5 C 0.27 8.47 6.66 38.82 0.26 8.73 16 6 N -0.66 -21.89 5.36 -339.02 -1.82 -23.70 16 7 C 0.15 4.84 5.21 86.38 0.45 5.29 16 8 C 0.00 -0.05 1.70 -52.93 -0.09 -0.14 16 9 C -0.51 -23.67 7.52 25.60 0.19 -23.48 16 10 H 0.05 2.35 7.83 -2.91 -0.02 2.33 16 11 C 0.05 2.25 5.37 84.65 0.45 2.70 16 12 N -0.89 -44.36 12.99 21.45 0.28 -44.08 16 13 Si 0.92 40.62 29.55 68.60 2.03 42.65 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 C -0.19 -6.46 9.88 30.59 0.30 -6.16 16 18 C -0.15 -5.65 9.51 30.59 0.29 -5.36 16 19 C -0.30 -10.65 6.39 22.78 0.15 -10.50 16 20 Cl -0.05 -1.81 27.26 -2.72 -0.07 -1.89 16 21 C 0.53 19.11 7.48 84.74 0.63 19.74 16 22 O -0.58 -24.27 16.19 -5.82 -0.09 -24.36 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.08 1.88 7.41 -2.39 -0.02 1.86 16 26 H 0.23 4.20 6.63 -2.91 -0.02 4.18 16 27 H 0.41 15.27 6.30 -92.71 -0.58 14.69 16 28 H 0.08 2.10 7.95 -2.39 -0.02 2.08 16 29 H 0.07 2.42 7.39 -2.39 -0.02 2.40 16 30 H 0.26 12.73 8.32 -92.71 -0.77 11.95 16 31 H 0.10 2.79 8.08 -2.39 -0.02 2.77 16 32 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 Total: -1.00 -59.40 309.72 3.20 -56.20 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.55 Total: 18.13 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.91 Total: -2.95 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -4.12 Total: -87.78 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.09 Total: -24.36 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.89 kcal Total: -59.40 3.20 -56.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362359708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.838 kcal (2) G-P(sol) polarization free energy of solvation -59.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds