Wall clock time and date at job start Tue Mar 31 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48500 * 109.46870 * 240.00096 * 3 2 1 5 5 H 1.48498 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46835 * 120.00070 * 3 2 1 7 7 C 1.37880 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99468 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00091 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.46930 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47401 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.46802 * 65.00170 * 12 11 10 14 14 C 1.34767 * 117.00373 * 180.02562 * 13 12 11 15 15 O 1.21522 * 119.99406 * 359.97438 * 14 13 12 16 16 C 1.47378 * 120.00506 * 180.02562 * 14 13 12 17 17 C 1.39839 * 120.06726 * 0.22190 * 16 14 13 18 18 C 1.37619 * 119.96544 * 180.27959 * 17 16 14 19 19 C 1.39162 * 120.09847 * 359.49480 * 18 17 16 20 20 N 1.39160 * 119.92849 * 180.23782 * 19 18 17 21 21 C 1.39399 * 120.13949 * 0.25297 * 19 18 17 22 22 F 1.35096 * 119.98537 * 180.02562 * 21 19 18 23 23 C 1.37771 * 120.03268 * 0.02562 * 21 19 18 24 24 H 0.96997 * 119.99732 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47542 * 59.99868 * 9 7 2 26 26 H 1.08997 * 109.46952 * 299.99653 * 9 7 2 27 27 H 1.09007 * 109.46816 * 60.00533 * 11 10 9 28 28 H 1.08993 * 109.47459 * 299.99947 * 11 10 9 29 29 H 1.09003 * 109.46980 * 305.00747 * 12 11 10 30 30 H 1.08995 * 109.47352 * 185.00053 * 12 11 10 31 31 H 1.08003 * 120.01802 * 0.05567 * 17 16 14 32 32 H 1.08002 * 119.95379 * 179.77629 * 18 17 16 33 33 H 0.96997 * 119.99975 * 359.97438 * 20 19 18 34 34 H 0.97004 * 119.99562 * 180.02562 * 20 19 18 35 35 H 1.07998 * 120.04996 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0011 12 6 2.6478 -5.9563 0.0004 13 8 3.3999 -5.8886 1.2406 14 6 4.3987 -6.7792 1.3999 15 8 4.6343 -7.5905 0.5264 16 6 5.2045 -6.7700 2.6338 17 6 4.9310 -5.8407 3.6424 18 6 5.6884 -5.8303 4.7913 19 6 6.7198 -6.7500 4.9557 20 7 7.4803 -6.7395 6.1210 21 6 6.9928 -7.6817 3.9553 22 9 7.9944 -8.5735 4.1184 23 6 6.2417 -7.6934 2.8004 24 1 -0.4849 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9445 -4.9827 -0.8887 28 1 0.9451 -4.9823 0.8913 29 1 3.3208 -5.7958 -0.8419 30 1 2.1817 -6.9376 -0.0887 31 1 4.1279 -5.1293 3.5181 32 1 5.4793 -5.1101 5.5685 33 1 7.2916 -6.0913 6.8175 34 1 8.1997 -7.3799 6.2364 35 1 6.4532 -8.4148 2.0250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385864307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:05 Heat of formation + Delta-G solvation = -157.436092 kcal Electronic energy + Delta-G solvation = -20969.261577 eV Core-core repulsion = 17267.755364 eV Total energy + Delta-G solvation = -3701.506213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.06358 -40.41765 -39.01722 -37.01768 -35.95874 -34.99184 -32.76969 -30.92773 -30.38500 -29.15456 -26.91347 -24.26650 -23.08172 -22.45336 -22.07080 -20.90122 -18.41935 -17.91406 -17.36897 -16.71541 -16.44092 -16.37623 -15.87252 -15.83973 -15.40310 -15.25599 -14.63926 -14.34825 -14.17692 -13.78933 -13.41261 -13.21221 -12.80034 -12.65364 -12.48679 -11.94878 -11.59728 -11.39629 -11.08032 -10.92171 -10.85054 -10.75154 -10.40610 -10.32948 -10.04678 -9.18303 -9.14024 -8.87010 -8.21034 -8.00782 -6.12048 -4.13756 0.60124 0.97046 2.51582 2.77208 3.28277 3.32018 3.34654 3.38651 3.53936 3.94787 4.32500 4.47124 4.67620 4.77976 4.85005 4.98690 5.24485 5.26627 5.31001 5.49534 5.57572 5.76407 5.83832 5.89383 5.98486 6.09193 6.14804 6.37499 6.61842 6.88789 7.05715 7.16981 7.39947 7.77897 7.90798 8.12702 8.52900 8.98820 9.51016 10.99477 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.003306 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.298077 B = 8468.691826 C = 9558.656534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.337 6.337 14 C 0.513 3.487 15 O -0.519 6.519 16 C -0.159 4.159 17 C -0.011 4.011 18 C -0.190 4.190 19 C 0.224 3.776 20 N -0.862 5.862 21 C -0.001 4.001 22 F -0.141 7.141 23 C -0.038 4.038 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.406 0.594 34 H 0.404 0.596 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.239 -15.103 11.585 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.253 6.253 14 C 0.359 3.641 15 O -0.410 6.410 16 C -0.163 4.163 17 C -0.030 4.030 18 C -0.213 4.213 19 C 0.115 3.885 20 N -0.400 5.400 21 C -0.025 4.025 22 F -0.120 7.120 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.236 0.764 34 H 0.233 0.767 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.337 -15.192 11.296 22.066 hybrid contribution 0.405 0.641 0.189 0.781 sum 11.741 -14.551 11.485 21.943 Atomic orbital electron populations 1.69951 1.06105 1.27304 1.50473 1.24945 0.94977 0.99424 0.95107 0.86387 0.79305 0.81856 0.78881 1.20004 1.21165 1.19977 1.21021 0.94087 0.89320 1.50960 0.91532 1.20224 0.88735 0.83490 0.95492 1.87920 1.35296 1.12612 1.95227 1.22329 0.93254 0.85436 1.00590 1.23227 0.93584 0.98802 0.84165 1.86628 1.43230 1.53753 1.41645 1.20866 0.78721 0.78132 0.86365 1.90814 1.68488 1.38496 1.43237 1.18630 1.00469 1.02199 0.94959 1.21438 0.96616 0.94597 0.90337 1.20530 0.98024 1.01946 1.00776 1.18019 0.91267 0.92791 0.86384 1.42370 1.38271 1.41112 1.18239 1.16768 0.93928 0.94971 0.96832 1.91453 1.58470 1.66289 1.95798 1.20944 0.92044 0.97193 0.95603 0.92578 0.97641 0.97491 0.91919 0.93155 0.90405 0.90345 0.83064 0.84133 0.76420 0.76679 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -15.11 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.19 5.28 5.69 36.01 0.20 5.48 16 10 O -0.39 -9.37 10.30 -38.79 -0.40 -9.77 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.08 1.21 5.86 37.16 0.22 1.43 16 13 O -0.34 -5.64 9.43 -43.46 -0.41 -6.04 16 14 C 0.51 8.07 7.89 34.45 0.27 8.34 16 15 O -0.52 -9.03 16.13 -19.28 -0.31 -9.34 16 16 C -0.16 -2.08 5.87 -104.97 -0.62 -2.70 16 17 C -0.01 -0.12 9.60 -39.21 -0.38 -0.50 16 18 C -0.19 -1.74 9.87 -39.46 -0.39 -2.13 16 19 C 0.22 2.04 6.76 -83.76 -0.57 1.47 16 20 N -0.86 -5.13 9.06 32.45 0.29 -4.84 16 21 C 0.00 -0.01 7.30 -39.32 -0.29 -0.30 16 22 F -0.14 -1.51 16.62 2.25 0.04 -1.47 16 23 C -0.04 -0.45 9.56 -39.14 -0.37 -0.83 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.15 1.74 7.60 -52.48 -0.40 1.34 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.41 1.50 8.83 -40.82 -0.36 1.14 16 34 H 0.40 2.05 8.29 -40.82 -0.34 1.71 16 35 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -33.57 320.67 -6.35 -39.92 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.00 Total: -1.71 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.10 Total: -2.30 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 1.03 Total: -30.76 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -1.12 Total: -25.16 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.57 -6.35 -39.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385864307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.519 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds