Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47052 * 207.76570 * 3 2 1 5 5 C 1.36950 * 120.00125 * 264.12991 * 4 3 2 6 6 H 1.08001 * 119.99891 * 142.31164 * 5 4 3 7 7 C 1.38982 * 120.00105 * 322.31792 * 5 4 3 8 8 N 1.31415 * 119.99865 * 158.46553 * 7 5 4 9 9 Si 1.86799 * 119.99686 * 338.46324 * 7 5 4 10 10 H 1.48502 * 109.46827 * 95.70077 * 9 7 5 11 11 H 1.48505 * 109.47040 * 215.69800 * 9 7 5 12 12 H 1.48496 * 109.47159 * 335.70220 * 9 7 5 13 13 C 1.34780 * 120.00101 * 84.12740 * 4 3 2 14 14 O 1.21677 * 119.99582 * 0.02562 * 13 4 3 15 15 C 1.46991 * 120.00263 * 179.97438 * 13 4 3 16 16 C 1.36139 * 127.14510 * 89.95694 * 15 13 4 17 17 C 1.50700 * 125.08593 * 0.02562 * 16 15 13 18 18 O 1.33826 * 109.83101 * 180.02562 * 16 15 13 19 19 C 1.34913 * 111.35609 * 0.02562 * 18 16 15 20 20 C 1.38967 * 133.10156 * 179.97438 * 19 18 16 21 21 C 1.37851 * 119.97635 * 180.02562 * 20 19 18 22 22 C 1.38690 * 120.65190 * 0.02562 * 21 20 19 23 23 C 1.37850 * 120.19746 * 0.02562 * 22 21 20 24 24 C 1.39107 * 119.63080 * 359.97438 * 23 22 21 25 25 H 4.40636 * 5.51402 * 179.97438 * 4 1 2 26 26 H 1.09004 * 109.46779 * 87.76665 * 3 2 1 27 27 H 1.09003 * 109.47070 * 327.76751 * 3 2 1 28 28 H 0.96997 * 119.99621 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46753 * 89.99382 * 17 16 15 30 30 H 1.08999 * 109.47263 * 209.99726 * 17 16 15 31 31 H 1.09000 * 109.47148 * 330.00190 * 17 16 15 32 32 H 1.07999 * 120.01536 * 359.97438 * 20 19 18 33 33 H 1.07996 * 119.67675 * 180.28654 * 21 20 19 34 34 H 1.07993 * 119.90034 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.18447 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2230 0.6434 5 6 3.4759 2.3083 -0.1186 6 1 3.2522 3.3055 0.2307 7 6 4.1108 2.1265 -1.3414 8 7 4.0656 3.0726 -2.2523 9 14 5.0284 0.5371 -1.6901 10 1 4.1404 -0.3947 -2.4307 11 1 6.2320 0.8299 -2.5091 12 1 5.4419 -0.0872 -0.4078 13 6 3.2458 1.2796 1.9854 14 8 2.9422 0.3152 2.6624 15 6 3.7357 2.5059 2.6310 16 6 2.9920 3.5622 3.0607 17 6 1.4928 3.6682 2.9499 18 8 3.7914 4.4923 3.5961 19 6 5.0853 4.1127 3.5520 20 6 6.2663 4.7145 3.9694 21 6 7.4704 4.0688 3.7866 22 6 7.5187 2.8190 3.1873 23 6 6.3577 2.2068 2.7659 24 6 5.1371 2.8494 2.9454 25 1 -1.0502 -0.0002 -0.0003 26 1 3.0093 -0.0392 -1.0269 27 1 3.0097 -0.8685 0.5481 28 1 4.5091 2.9458 -3.1056 29 1 1.0319 3.2489 3.8443 30 1 1.2089 4.7160 2.8519 31 1 1.1533 3.1162 2.0735 32 1 6.2408 5.6881 4.4361 33 1 8.3848 4.5390 4.1170 34 1 8.4687 2.3243 3.0498 35 1 6.3955 1.2333 2.2996 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490974795.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = 65.945774 kcal Electronic energy + Delta-G solvation = -21958.062040 eV Core-core repulsion = 18697.011617 eV Total energy + Delta-G solvation = -3261.050423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06867 -38.81319 -37.53513 -35.26833 -33.06010 -32.52519 -31.61673 -30.86254 -30.04320 -27.49380 -26.41335 -24.98861 -22.69036 -22.11633 -21.13318 -19.00697 -18.50546 -17.53373 -16.56059 -16.32130 -15.87606 -15.58754 -15.31616 -15.04714 -14.33949 -13.95966 -13.55851 -13.37901 -13.14834 -12.90760 -12.84373 -12.75290 -12.28568 -12.09158 -11.94278 -11.82781 -11.35046 -11.07965 -10.88930 -10.56585 -10.30342 -9.88856 -9.56933 -9.50145 -9.34998 -8.86464 -8.26885 -8.07249 -7.60256 -6.57014 -4.17597 1.25719 1.68586 2.61950 2.93567 3.01755 3.11169 3.18002 3.21502 3.45014 3.47163 4.01804 4.05780 4.49084 4.75663 4.80889 5.04836 5.10223 5.19899 5.46736 5.51637 5.59492 5.68911 5.75098 5.81271 5.91714 6.01575 6.07871 6.18243 6.25204 6.46882 6.54557 6.62083 6.72989 6.81378 6.99207 7.15413 7.54928 7.91710 8.15840 8.19840 8.81120 9.16724 9.47582 10.53569 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.007844 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.365209 B = 3568.968763 C = 4416.433317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.164 4.164 3 C 0.201 3.799 4 N -0.447 5.447 5 C -0.342 4.342 6 H 0.106 0.894 7 C 0.071 3.929 8 N -0.851 5.851 9 Si 0.863 3.137 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.257 1.257 13 C 0.552 3.448 14 O -0.582 6.582 15 C -0.160 4.160 16 C 0.057 3.943 17 C -0.075 4.075 18 O -0.190 6.190 19 C 0.049 3.951 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.062 4.062 24 C -0.084 4.084 25 H 0.213 0.787 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.277 0.723 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 1.096 7.249 7.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.165 4.165 3 C 0.079 3.921 4 N -0.166 5.166 5 C -0.468 4.468 6 H 0.123 0.877 7 C -0.137 4.137 8 N -0.485 5.485 9 Si 0.690 3.310 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.181 1.181 13 C 0.341 3.659 14 O -0.466 6.466 15 C -0.164 4.164 16 C 0.008 3.992 17 C -0.131 4.131 18 O -0.092 6.092 19 C 0.002 3.998 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.157 4.157 23 C -0.080 4.080 24 C -0.086 4.086 25 H 0.230 0.770 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.748 0.952 7.465 7.726 hybrid contribution 0.403 -0.676 -0.692 1.048 sum 2.151 0.276 6.774 7.112 Atomic orbital electron populations 1.24652 0.95588 1.01468 1.02595 1.23619 0.94756 0.99344 0.98815 1.18726 0.84180 0.90206 0.99009 1.43650 1.55522 1.13080 1.04386 1.19014 1.39500 0.86810 1.01510 0.87651 1.25317 0.95701 0.97516 0.95211 1.69747 1.39334 1.34432 1.05009 0.87135 0.80513 0.83782 0.79618 1.19755 1.20766 1.18104 1.17205 0.80475 0.86017 0.82248 1.90691 1.54527 1.37182 1.64192 1.20419 0.91770 0.97357 1.06872 1.22369 0.93287 0.86355 0.97191 1.20424 0.84591 1.04051 1.04071 1.83709 1.15163 1.42545 1.67759 1.19480 0.83585 0.94540 1.02149 1.19810 0.88105 1.00702 1.04091 1.20778 0.96369 0.95225 0.99702 1.20945 0.97788 0.95950 1.01063 1.20523 0.90289 0.99718 0.97454 1.19482 0.92962 0.94832 1.01274 0.77001 0.88837 0.88954 0.91287 0.89822 0.90108 0.88695 0.85434 0.85190 0.85615 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.10 19.25 29.55 0.57 -3.53 16 2 C -0.16 -3.50 13.62 -37.12 -0.51 -4.01 16 3 C 0.20 4.53 4.42 -6.83 -0.03 4.50 16 4 N -0.45 -10.93 2.15 -119.30 -0.26 -11.19 16 5 C -0.34 -8.94 9.08 -14.99 -0.14 -9.07 16 6 H 0.11 2.96 7.48 -52.49 -0.39 2.57 16 7 C 0.07 1.85 5.28 -17.45 -0.09 1.76 16 8 N -0.85 -23.25 13.96 55.50 0.77 -22.48 16 9 Si 0.86 19.68 24.99 -169.99 -4.25 15.43 16 10 H -0.27 -5.87 6.70 56.52 0.38 -5.49 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.55 13.42 6.96 -12.71 -0.09 13.33 16 14 O -0.58 -15.08 16.79 5.21 0.09 -15.00 16 15 C -0.16 -3.59 4.52 -103.25 -0.47 -4.06 16 16 C 0.06 1.13 7.23 -35.06 -0.25 0.87 16 17 C -0.08 -1.21 10.20 36.01 0.37 -0.84 16 18 O -0.19 -3.64 10.53 5.27 0.06 -3.59 16 19 C 0.05 0.93 7.39 -38.56 -0.28 0.65 16 20 C -0.11 -1.65 10.06 -39.45 -0.40 -2.04 16 21 C -0.10 -1.39 10.01 -39.56 -0.40 -1.79 16 22 C -0.14 -2.09 10.04 -39.56 -0.40 -2.49 16 23 C -0.06 -1.16 10.09 -39.40 -0.40 -1.55 16 24 C -0.08 -1.76 6.39 -104.97 -0.67 -2.43 16 25 H 0.21 2.85 7.80 -54.08 -0.42 2.42 16 26 H 0.09 2.11 3.54 -51.93 -0.18 1.92 16 27 H 0.09 1.99 7.60 -51.93 -0.39 1.60 16 28 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.68 7.87 -51.93 -0.41 1.27 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -31.27 314.97 -5.52 -36.79 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.50 Total: 5.99 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.18 Total: -10.71 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.52 Total: -33.67 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.14 Total: -18.58 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.25 Total: 15.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.27 -5.52 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974795.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.735 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds