Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99899 * 2 1 4 4 H 1.48502 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47143 * 299.99536 * 3 2 1 6 6 H 1.48495 * 109.47652 * 59.99956 * 3 2 1 7 7 C 1.37875 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00264 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00305 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47272 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.46900 * 110.99631 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46965 * 179.97438 * 12 11 10 14 14 S 1.81400 * 109.47325 * 179.97438 * 13 12 11 15 15 O 1.42107 * 110.54026 * 68.37787 * 14 13 12 16 16 O 1.42102 * 110.54546 * 291.63018 * 14 13 12 17 17 C 1.76199 * 104.45123 * 179.97438 * 14 13 12 18 18 C 1.38238 * 119.99628 * 90.00470 * 17 14 13 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00344 * 269.98304 * 17 14 13 23 23 H 0.96993 * 120.00285 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47097 * 59.99818 * 9 7 2 25 25 H 1.09002 * 109.46992 * 300.00541 * 9 7 2 26 26 H 1.09001 * 109.47531 * 59.99688 * 10 9 7 27 27 H 1.09006 * 109.46622 * 299.99602 * 10 9 7 28 28 H 1.00894 * 111.00053 * 303.94575 * 11 10 9 29 29 H 1.09002 * 109.47186 * 60.00250 * 12 11 10 30 30 H 1.09000 * 109.47431 * 299.99413 * 12 11 10 31 31 H 1.09005 * 109.47183 * 60.00236 * 13 12 11 32 32 H 1.08996 * 109.47481 * 300.00418 * 13 12 11 33 33 H 1.08005 * 120.00068 * 359.97438 * 18 17 14 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07999 * 119.99968 * 359.97438 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 2.4353 -6.0759 0.0037 13 6 1.6352 -7.3801 0.0048 14 16 2.7768 -8.7898 0.0045 15 8 3.4726 -8.8682 1.2411 16 8 3.4708 -8.8692 -1.2329 17 6 1.7275 -10.2053 0.0067 18 6 1.3146 -10.7614 -1.1896 19 6 0.4918 -11.8722 -1.1879 20 6 0.0824 -12.4273 0.0100 21 6 0.4909 -11.8680 1.2063 22 6 1.3174 -10.7600 1.2047 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8720 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8874 28 1 0.8742 -4.9840 0.7845 29 1 3.0633 -6.0345 0.8936 30 1 3.0631 -6.0353 -0.8864 31 1 1.0069 -7.4217 -0.8849 32 1 1.0075 -7.4205 0.8950 33 1 1.6349 -10.3280 -2.1256 34 1 0.1690 -12.3064 -2.1226 35 1 -0.5601 -13.2954 0.0112 36 1 0.1674 -12.2990 2.1423 37 1 1.6406 -10.3259 2.1393 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574033441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -51.425042 kcal Electronic energy + Delta-G solvation = -19002.504042 eV Core-core repulsion = 15871.807989 eV Total energy + Delta-G solvation = -3130.696052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45579 -37.25475 -36.52928 -36.07908 -33.31756 -31.72386 -31.41536 -31.37187 -28.29402 -24.37743 -23.61166 -23.12528 -22.21678 -20.66340 -19.21868 -18.23257 -16.67024 -16.43889 -16.27155 -16.15240 -15.67329 -15.02893 -14.88803 -14.53171 -14.03571 -13.91918 -13.74564 -13.40924 -13.31605 -12.58256 -12.25652 -12.21699 -12.15134 -12.06363 -11.68711 -11.65184 -11.16911 -11.07743 -10.96538 -10.80965 -10.50800 -10.06620 -9.78654 -9.44251 -9.43599 -9.16631 -8.38717 -8.01556 -6.02609 -4.05290 -0.16950 0.46777 0.89577 2.68198 3.08040 3.30350 3.37818 3.42072 3.67571 3.93076 4.38625 4.38885 4.47805 4.49658 4.58033 4.64978 4.84066 4.91462 5.07645 5.27586 5.30479 5.33738 5.51260 5.55549 5.69829 5.70441 5.81814 5.94397 6.24019 6.31034 6.42424 6.89937 7.30397 7.64948 7.72208 7.85487 8.02400 8.39182 9.01949 9.58890 11.08904 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.037830 B = 0.002678 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.969208 B =10454.593227 C =10709.534501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.060 3.940 11 N -0.682 5.682 12 C 0.065 3.935 13 C -0.599 4.599 14 S 2.498 3.502 15 O -0.938 6.938 16 O -0.935 6.935 17 C -0.657 4.657 18 C -0.023 4.023 19 C -0.142 4.142 20 C -0.068 4.068 21 C -0.142 4.142 22 C -0.025 4.025 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.015 0.985 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -25.755 0.805 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.068 4.068 11 N -0.314 5.314 12 C -0.066 4.066 13 C -0.729 4.729 14 S 2.678 3.322 15 O -0.935 6.935 16 O -0.932 6.932 17 C -0.744 4.744 18 C -0.042 4.042 19 C -0.160 4.160 20 C -0.086 4.086 21 C -0.161 4.161 22 C -0.043 4.043 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.092 -25.668 0.118 25.668 hybrid contribution -0.311 0.704 0.934 1.210 sum -0.218 -24.964 1.051 24.987 Atomic orbital electron populations 1.69977 1.06057 1.26560 1.50680 1.25007 0.94862 0.99303 0.95236 0.86510 0.80093 0.83646 0.77587 1.19720 1.20955 1.21019 1.21207 0.93092 0.90909 1.50874 0.92584 1.19083 0.93997 0.90358 0.97844 1.22271 0.97251 0.87999 0.99233 1.60639 1.19212 1.01603 1.49957 1.21624 0.94375 0.88614 1.01973 1.30360 1.15971 1.13914 1.12684 1.05427 0.76053 0.75971 0.74785 1.93570 1.69359 1.86006 1.44581 1.93575 1.69347 1.85937 1.44386 1.30669 1.21255 1.22952 0.99491 1.21041 0.92163 0.94175 0.96849 1.21337 0.99034 0.96988 0.98677 1.21518 0.96325 0.98085 0.92692 1.21330 0.99046 0.97020 0.98684 1.21022 0.92270 0.94273 0.96780 0.93007 0.95516 0.96708 0.96086 0.91862 0.84247 0.93946 0.89596 0.83704 0.84747 0.83895 0.84944 0.85245 0.84982 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.49 16 10 C 0.06 1.25 5.62 -3.83 -0.02 1.23 16 11 N -0.68 -11.62 6.50 -113.77 -0.74 -12.36 16 12 C 0.07 0.89 5.69 -3.82 -0.02 0.87 16 13 C -0.60 -5.96 6.24 37.16 0.23 -5.73 16 14 S 2.50 27.06 5.16 -107.50 -0.55 26.51 16 15 O -0.94 -12.67 17.12 -57.54 -0.99 -13.66 16 16 O -0.94 -12.75 17.13 -57.54 -0.99 -13.73 16 17 C -0.66 -6.32 5.66 -39.58 -0.22 -6.54 16 18 C -0.02 -0.21 9.47 -39.58 -0.37 -0.58 16 19 C -0.14 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.07 -0.45 10.05 -39.58 -0.40 -0.85 16 21 C -0.14 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.02 -0.22 9.47 -39.58 -0.37 -0.59 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.34 5.38 8.73 -39.30 -0.34 5.03 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.14 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.14 1.10 7.57 -52.48 -0.40 0.71 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.14 1.07 7.57 -52.49 -0.40 0.67 16 LS Contribution 331.39 15.07 4.99 4.99 Total: -1.00 -35.61 331.39 -10.42 -46.03 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.33 Total: -0.26 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -2.54 Total: -28.08 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.00 Total: -38.40 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -1.97 Total: -27.39 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 27.06 SS G_CDS: -0.55 Total: 26.51 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.61 -10.42 -46.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574033441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.397 kcal (2) G-P(sol) polarization free energy of solvation -35.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds