Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99992 * 2 1 4 4 C 1.38522 * 111.00368 * 123.95728 * 2 1 3 5 5 N 1.32601 * 119.53969 * 302.30226 * 4 2 1 6 6 C 1.31662 * 121.65689 * 179.70986 * 5 4 2 7 7 C 1.39646 * 120.53046 * 0.55784 * 6 5 4 8 8 C 1.47439 * 120.48060 * 179.74625 * 7 6 5 9 9 O 1.21627 * 119.99567 * 328.35280 * 8 7 6 10 10 N 1.34769 * 120.00034 * 148.35181 * 8 7 6 11 11 C 1.46499 * 120.00024 * 354.88977 * 10 8 7 12 12 C 1.36911 * 119.99930 * 174.89615 * 10 8 7 13 13 H 1.07999 * 120.00159 * 324.63348 * 12 10 8 14 14 C 1.39014 * 119.99953 * 144.62867 * 12 10 8 15 15 N 1.31389 * 119.99777 * 158.15705 * 14 12 10 16 16 Si 1.86802 * 120.00287 * 338.15862 * 14 12 10 17 17 H 1.48495 * 109.47090 * 95.39081 * 16 14 12 18 18 H 1.48499 * 109.47122 * 215.39125 * 16 14 12 19 19 H 1.48495 * 109.46930 * 335.38798 * 16 14 12 20 20 C 1.40382 * 119.04153 * 359.73001 * 7 6 5 21 21 C 1.36952 * 118.47934 * 359.97438 * 20 7 6 22 22 Cl 1.73597 * 120.31651 * 179.97438 * 21 20 7 23 23 H 1.08992 * 109.47687 * 59.99772 * 1 2 3 24 24 H 1.08999 * 109.46764 * 299.99702 * 1 2 3 25 25 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47042 * 59.05896 * 3 2 1 27 27 H 1.08996 * 109.47393 * 179.05720 * 3 2 1 28 28 H 1.09003 * 109.47550 * 299.05623 * 3 2 1 29 29 H 1.07996 * 119.73628 * 180.28614 * 6 5 4 30 30 H 1.08999 * 109.46875 * 92.03210 * 11 10 8 31 31 H 1.09004 * 109.47524 * 212.02506 * 11 10 8 32 32 H 1.08995 * 109.47574 * 332.03003 * 11 10 8 33 33 H 0.97005 * 120.00237 * 180.02562 * 15 14 12 34 34 H 1.08001 * 120.75631 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9655 -0.7223 1.0726 5 7 1.6243 -0.3779 2.3068 6 6 2.0671 -1.0385 3.3561 7 6 2.9281 -2.1266 3.1978 8 6 3.4277 -2.8622 4.3738 9 8 3.6060 -2.2781 5.4257 10 7 3.6868 -4.1816 4.2832 11 6 3.3672 -4.9080 3.0518 12 6 4.2487 -4.8432 5.3421 13 1 4.9753 -4.3444 5.9663 14 6 3.8839 -6.1568 5.6137 15 7 4.6831 -6.9290 6.3145 16 14 2.2574 -6.8241 4.9822 17 1 2.4791 -7.5339 3.6969 18 1 1.6899 -7.7686 5.9778 19 1 1.3102 -5.7003 4.7702 20 6 3.3106 -2.5101 1.9027 21 6 2.8215 -1.7986 0.8396 22 17 3.2640 -2.2311 -0.7823 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6323 1.9000 0.8815 27 1 3.0849 1.3424 0.0169 28 1 1.6597 1.8896 -0.8983 29 1 1.7657 -0.7339 4.3473 30 1 4.2370 -4.9099 2.3949 31 1 3.0942 -5.9347 3.2960 32 1 2.5326 -4.4202 2.5483 33 1 4.4288 -7.8458 6.5037 34 1 3.9748 -3.3476 1.7482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594256313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = 40.006373 kcal Electronic energy + Delta-G solvation = -20141.831767 eV Core-core repulsion = 16909.516428 eV Total energy + Delta-G solvation = -3232.315338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76890 -38.80173 -36.70754 -36.46594 -35.08498 -32.79513 -31.86799 -30.38143 -27.75572 -26.85162 -26.08186 -24.76496 -23.28325 -21.94513 -19.75409 -17.55714 -17.20502 -17.09971 -16.35688 -15.82025 -15.52416 -14.98120 -14.52275 -14.35589 -14.27086 -13.66088 -13.42696 -13.07934 -12.62929 -12.43003 -12.39503 -12.20236 -12.13149 -11.96190 -11.89039 -11.78139 -11.05037 -10.98982 -10.50281 -10.07885 -9.92793 -9.58325 -9.27595 -8.91660 -8.70628 -8.64929 -7.99650 -6.61998 -4.12629 0.69774 1.11904 2.11694 2.89998 3.09651 3.14554 3.29007 3.49077 3.91224 3.96189 4.21482 4.47749 4.78141 4.87369 4.93541 5.00054 5.20941 5.23929 5.36065 5.42263 5.51256 5.59239 5.72181 5.73787 5.74737 5.88533 6.03668 6.12943 6.30845 6.60256 7.05410 7.29506 7.75918 8.04720 8.27689 8.72800 9.06589 9.52575 10.48445 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.005172 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.017926 B = 5412.664236 C = 5783.149104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.489 5.489 3 C 0.031 3.969 4 C 0.293 3.707 5 N -0.498 5.498 6 C 0.152 3.848 7 C -0.138 4.138 8 C 0.490 3.510 9 O -0.559 6.559 10 N -0.447 5.447 11 C 0.053 3.947 12 C -0.311 4.311 13 H 0.113 0.887 14 C 0.061 3.939 15 N -0.847 5.847 16 Si 0.883 3.117 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.061 4.061 21 C -0.060 4.060 22 Cl -0.045 7.045 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.279 0.721 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 8.827 -14.852 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.211 5.211 3 C -0.116 4.116 4 C 0.063 3.937 5 N -0.209 5.209 6 C -0.007 4.007 7 C -0.145 4.145 8 C 0.279 3.721 9 O -0.442 6.442 10 N -0.167 5.167 11 C -0.090 4.090 12 C -0.438 4.438 13 H 0.130 0.870 14 C -0.147 4.147 15 N -0.482 5.482 16 Si 0.710 3.290 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.088 4.088 21 C -0.091 4.091 22 Cl -0.017 7.017 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.188 0.812 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.840 9.348 -14.673 18.694 hybrid contribution -0.473 -0.990 0.111 1.103 sum -7.313 8.358 -14.561 18.313 Atomic orbital electron populations 1.22375 0.85070 1.02622 1.01589 1.59996 1.09593 1.15029 1.36501 1.22389 1.00731 0.86865 1.01602 1.19630 0.93673 0.92376 0.88008 1.67930 1.24455 1.29737 0.98805 1.22797 0.91162 0.89378 0.97392 1.21416 1.00185 0.98499 0.94353 1.17705 0.84010 0.83509 0.86898 1.90692 1.56336 1.67747 1.29425 1.43665 1.53417 1.06969 1.12614 1.22427 0.99937 0.98013 0.88592 1.19175 1.20932 0.95384 1.08289 0.86968 1.25416 0.97362 0.95969 0.95990 1.69726 1.34533 1.07261 1.36666 0.86874 0.84696 0.79371 0.78030 1.19890 1.21083 1.18754 1.21956 0.97755 0.98863 0.90269 1.21235 1.01846 0.98297 0.87712 1.98356 1.91401 1.92085 1.19819 0.90689 0.93747 0.91439 0.93965 0.91348 0.90561 0.81164 0.92026 0.91792 0.91833 0.91083 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.37 60.06 0.56 0.88 16 2 N -0.49 -5.97 4.36 -188.96 -0.82 -6.80 16 3 C 0.03 0.32 9.45 60.06 0.57 0.89 16 4 C 0.29 4.27 5.30 -155.19 -0.82 3.45 16 5 N -0.50 -7.79 9.63 -12.09 -0.12 -7.91 16 6 C 0.15 2.58 10.77 -17.10 -0.18 2.40 16 7 C -0.14 -2.54 5.29 -104.82 -0.55 -3.10 16 8 C 0.49 11.25 7.36 -12.52 -0.09 11.16 16 9 O -0.56 -14.82 16.64 5.25 0.09 -14.73 16 10 N -0.45 -10.51 2.62 -123.42 -0.32 -10.83 16 11 C 0.05 1.01 7.67 59.85 0.46 1.47 16 12 C -0.31 -8.46 9.38 -15.00 -0.14 -8.60 16 13 H 0.11 3.42 7.92 -52.49 -0.42 3.00 16 14 C 0.06 1.61 5.33 -17.45 -0.09 1.51 16 15 N -0.85 -23.35 13.96 55.50 0.77 -22.57 16 16 Si 0.88 19.76 24.91 -169.99 -4.23 15.53 16 17 H -0.27 -5.61 6.69 56.52 0.38 -5.23 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.06 -0.97 7.44 -39.24 -0.29 -1.27 16 21 C -0.06 -0.88 6.32 -39.59 -0.25 -1.13 16 22 Cl -0.05 -0.58 28.44 -51.86 -1.47 -2.06 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 25 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 26 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 27 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.17 2.78 7.95 -52.49 -0.42 2.37 16 30 H 0.06 1.01 6.86 -51.93 -0.36 0.65 16 31 H 0.06 1.28 2.84 -51.93 -0.15 1.13 16 32 H 0.06 1.06 5.77 -51.93 -0.30 0.76 16 33 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.16 2.36 5.14 -52.49 -0.27 2.09 16 LS Contribution 298.40 15.07 4.50 4.50 Total: -1.00 -30.05 298.40 -6.04 -36.09 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.58 Total: 1.11 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.84 Total: 7.67 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.49 Total: -48.11 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.09 Total: -14.73 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.23 Total: 15.53 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.47 Total: -2.06 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.05 -6.04 -36.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594256313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.095 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds