Wall clock time and date at job start Tue Mar 31 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29027 * 124.92175 * 2 1 4 4 C 1.31775 * 117.12866 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74831 * 180.02562 * 4 3 2 6 6 C 1.33631 * 114.50178 * 359.97438 * 4 3 2 7 7 C 1.50701 * 126.03934 * 179.97438 * 6 4 3 8 8 S 1.81403 * 109.46979 * 90.00237 * 7 6 4 9 9 C 1.81398 * 103.00179 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47321 * 180.02562 * 9 8 7 11 11 C 1.50698 * 115.54961 * 65.33102 * 10 9 8 12 12 H 1.08001 * 120.00069 * 265.65247 * 11 10 9 13 13 C 1.37875 * 120.00162 * 85.65107 * 11 10 9 14 14 N 1.31513 * 119.99999 * 353.68778 * 13 11 10 15 15 Si 1.86800 * 120.00236 * 173.68886 * 13 11 10 16 16 H 1.48501 * 109.47365 * 90.00050 * 15 13 11 17 17 H 1.48497 * 109.46985 * 210.00310 * 15 13 11 18 18 H 1.48508 * 109.46810 * 329.99885 * 15 13 11 19 19 C 1.52998 * 117.49640 * 279.66069 * 10 9 8 20 20 C 1.52997 * 117.49974 * 211.00416 * 10 9 8 21 21 S 1.70978 * 124.91635 * 180.31845 * 2 1 3 22 22 H 1.09003 * 109.47176 * 90.02278 * 1 2 3 23 23 H 1.08997 * 109.46839 * 210.02113 * 1 2 3 24 24 H 1.08993 * 109.46982 * 330.02408 * 1 2 3 25 25 H 1.08996 * 109.46985 * 270.00119 * 5 4 3 26 26 H 1.09006 * 109.46926 * 30.00094 * 5 4 3 27 27 H 1.09000 * 109.47195 * 149.99760 * 5 4 3 28 28 H 1.09000 * 109.47083 * 330.00713 * 7 6 4 29 29 H 1.08996 * 109.47179 * 210.00236 * 7 6 4 30 30 H 1.09000 * 109.47118 * 59.99838 * 9 8 7 31 31 H 1.09006 * 109.47011 * 300.00292 * 9 8 7 32 32 H 0.96997 * 120.00385 * 175.01444 * 14 13 11 33 33 H 1.08997 * 117.50098 * 0.02562 * 19 10 9 34 34 H 1.09001 * 117.49700 * 145.02015 * 19 10 9 35 35 H 1.09002 * 117.49963 * 214.98021 * 20 10 9 36 36 H 1.09005 * 117.50027 * 359.97148 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 0.0000 6 6 3.9354 -0.4006 -0.0004 7 6 5.3575 -0.8995 -0.0015 8 16 5.9295 -1.0992 1.7084 9 6 7.6304 -1.6951 1.5028 10 6 8.2629 -1.9168 2.8782 11 6 7.6416 -3.0084 3.7109 12 1 6.8752 -2.7671 4.4326 13 6 8.0516 -4.3151 3.5516 14 7 8.8926 -4.6278 2.5901 15 14 7.4126 -5.6413 4.7015 16 1 6.1675 -6.2248 4.1407 17 1 8.4370 -6.7065 4.8462 18 1 7.1254 -5.0468 6.0317 19 6 8.8041 -0.6888 3.6130 20 6 9.7730 -1.7052 3.0037 21 16 2.4857 -1.4020 -0.0078 22 1 -0.3634 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8901 0.5134 25 1 4.7666 2.3013 -1.0275 26 1 4.0907 2.8788 0.5146 27 1 5.4434 1.7218 0.5134 28 1 5.9945 -0.1801 -0.5160 29 1 5.4053 -1.8597 -0.5151 30 1 8.2102 -0.9555 0.9507 31 1 7.6217 -2.6354 0.9513 32 1 9.2373 -5.5319 2.5222 33 1 8.7092 0.2770 3.1168 34 1 8.7112 -0.6706 4.6989 35 1 10.3170 -2.3553 3.6889 36 1 10.3159 -1.4085 2.1063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596340070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:30 Heat of formation + Delta-G solvation = 51.486079 kcal Electronic energy + Delta-G solvation = -17209.965870 eV Core-core repulsion = 14526.485250 eV Total energy + Delta-G solvation = -2683.480620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87258 -36.58465 -33.87009 -31.94501 -30.44643 -29.10143 -27.70613 -25.44610 -24.83420 -22.70911 -21.13053 -19.40145 -18.72547 -17.85970 -16.27417 -15.57949 -15.14056 -14.76097 -14.62933 -13.98809 -13.64417 -13.58393 -13.42570 -13.24718 -13.08175 -12.69650 -12.43307 -12.02669 -12.01371 -11.84622 -11.41072 -11.06858 -10.99730 -10.90689 -10.47979 -10.23634 -9.70622 -9.60953 -9.54670 -9.03290 -8.83360 -8.48063 -8.38304 -8.02671 -6.87395 -6.05734 -4.10760 0.63549 1.36505 1.80603 2.31261 2.94776 3.30200 3.37086 3.41484 3.42939 4.06834 4.41703 4.85050 4.94910 5.03560 5.23553 5.23937 5.27561 5.36859 5.50883 5.60167 5.64993 5.68550 5.87693 5.93928 5.98592 6.18466 6.35678 6.37380 6.50601 6.71640 6.78788 7.04804 7.38259 7.47034 7.78124 7.87873 8.38542 8.91217 9.55588 11.03427 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.004613 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.284309 B = 6067.708300 C = 6970.770105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.035 3.965 3 N -0.471 5.471 4 C 0.073 3.927 5 C -0.080 4.080 6 C -0.195 4.195 7 C -0.028 4.028 8 S -0.227 6.227 9 C -0.030 4.030 10 C 0.055 3.945 11 C -0.484 4.484 12 H 0.062 0.938 13 C 0.072 3.928 14 N -0.882 5.882 15 Si 0.887 3.113 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.204 4.204 20 C -0.148 4.148 21 S 0.137 5.863 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 8.163 -7.799 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.244 4.244 3 N -0.187 5.187 4 C -0.062 4.062 5 C -0.139 4.139 6 C -0.316 4.316 7 C -0.177 4.177 8 S 0.003 5.997 9 C -0.178 4.178 10 C 0.054 3.946 11 C -0.522 4.522 12 H 0.080 0.920 13 C -0.130 4.130 14 N -0.519 5.519 15 Si 0.715 3.285 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.242 4.242 20 C -0.188 4.188 21 S 0.392 5.608 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.914 7.581 -7.007 15.764 hybrid contribution 1.102 -0.473 -0.577 1.331 sum -10.812 7.108 -7.585 14.999 Atomic orbital electron populations 1.20397 0.85344 1.04122 1.03579 1.26892 1.01594 0.91517 1.04359 1.66133 1.04407 1.31773 1.16364 1.20100 0.90114 0.93942 1.02009 1.20394 0.96505 0.94512 1.02525 1.24998 0.98467 0.95630 1.12544 1.21654 0.91631 1.03713 1.00738 1.87221 1.19638 1.87017 1.05850 1.23154 0.90877 1.01417 1.02366 1.18430 0.92053 0.93820 0.90343 1.20381 1.21640 0.90032 1.20114 0.92012 1.24931 0.95180 0.98181 0.94745 1.70003 1.31906 1.19814 1.30186 0.86671 0.78677 0.81578 0.81579 1.20540 1.21262 1.19813 1.23018 1.08361 0.93555 0.99249 1.22577 0.94026 1.01349 1.00803 1.84031 0.97039 1.11575 1.68137 0.89853 0.90149 0.89445 0.91030 0.90671 0.89879 0.88913 0.89457 0.93301 0.89769 0.93075 0.91403 0.90285 0.89782 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.46 36.01 0.38 -0.26 16 2 C 0.03 0.45 7.39 -13.46 -0.10 0.35 16 3 N -0.47 -7.01 10.53 -8.06 -0.08 -7.10 16 4 C 0.07 1.08 6.74 -84.23 -0.57 0.51 16 5 C -0.08 -0.99 9.82 36.01 0.35 -0.64 16 6 C -0.19 -2.96 5.85 -35.92 -0.21 -3.17 16 7 C -0.03 -0.43 5.87 36.01 0.21 -0.22 16 8 S -0.23 -4.51 21.41 -107.50 -2.30 -6.81 16 9 C -0.03 -0.65 5.80 37.16 0.22 -0.43 16 10 C 0.06 1.33 1.34 -155.66 -0.21 1.12 16 11 C -0.48 -13.03 8.49 -34.44 -0.29 -13.32 16 12 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 13 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 14 N -0.88 -24.42 12.90 55.43 0.71 -23.71 16 15 Si 0.89 21.12 29.55 -169.99 -5.02 16.10 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.20 -4.42 9.96 -26.70 -0.27 -4.69 16 20 C -0.15 -3.37 9.40 -26.70 -0.25 -3.62 16 21 S 0.14 1.85 23.18 -107.50 -2.49 -0.64 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.06 7.35 -51.93 -0.38 0.68 16 28 H 0.09 1.29 7.43 -51.92 -0.39 0.90 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 31 H 0.08 2.00 8.14 -51.92 -0.42 1.58 16 32 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 35 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -29.33 333.96 -10.37 -39.70 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.38 Total: -0.06 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -0.83 Total: -22.51 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.63 Total: -30.81 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -4.79 Total: -7.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.33 -10.37 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596340070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.186 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds