Wall clock time and date at job start Tue Mar 31 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31789 * 122.74822 * 2 1 4 4 C 1.29022 * 117.12283 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.91270 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47152 * 90.00526 * 5 4 3 7 7 C 1.81395 * 103.00147 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47261 * 179.97438 * 7 6 5 9 9 C 1.50705 * 115.54884 * 65.32856 * 8 7 6 10 10 H 1.08001 * 119.99673 * 265.65480 * 9 8 7 11 11 C 1.37878 * 119.99904 * 85.65137 * 9 8 7 12 12 N 1.31515 * 120.00392 * 353.68662 * 11 9 8 13 13 Si 1.86804 * 119.99730 * 173.68555 * 11 9 8 14 14 H 1.48506 * 109.47046 * 90.00015 * 13 11 9 15 15 H 1.48498 * 109.47123 * 210.00080 * 13 11 9 16 16 H 1.48495 * 109.47147 * 330.00152 * 13 11 9 17 17 C 1.52996 * 117.50064 * 279.65937 * 8 7 6 18 18 C 1.52999 * 117.49995 * 210.99857 * 8 7 6 19 19 S 1.70976 * 110.16786 * 0.23248 * 4 3 2 20 20 C 1.33635 * 122.74836 * 180.02562 * 2 1 3 21 21 C 1.50697 * 126.04242 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47562 * 89.97383 * 1 2 3 23 23 H 1.09002 * 109.46877 * 209.97119 * 1 2 3 24 24 H 1.09004 * 109.47504 * 329.96938 * 1 2 3 25 25 H 1.08989 * 109.47052 * 330.00027 * 5 4 3 26 26 H 1.09007 * 109.46601 * 209.99845 * 5 4 3 27 27 H 1.09002 * 109.46503 * 299.99815 * 7 6 5 28 28 H 1.08996 * 109.47675 * 59.99157 * 7 6 5 29 29 H 0.96996 * 119.99981 * 175.01934 * 12 11 9 30 30 H 1.09004 * 117.49518 * 359.97438 * 17 8 7 31 31 H 1.08997 * 117.50044 * 145.02160 * 17 8 7 32 32 H 1.08998 * 117.49568 * 214.98147 * 18 8 7 33 33 H 1.08995 * 117.49856 * 359.97224 * 18 8 7 34 34 H 1.08998 * 109.47243 * 90.00043 * 21 20 2 35 35 H 1.08995 * 109.47012 * 210.00176 * 21 20 2 36 36 H 1.09002 * 109.46842 * 330.00263 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4834 2.1273 -0.0012 6 16 4.8773 2.5870 1.7088 7 6 6.0480 3.9573 1.5037 8 6 6.4832 4.4666 2.8792 9 6 7.2760 3.4925 3.7121 10 1 6.7736 2.8651 4.4334 11 6 8.6425 3.4021 3.5530 12 7 9.2385 4.0732 2.5917 13 14 9.6476 2.3266 4.7030 14 1 9.7413 0.9547 4.1421 15 1 11.0112 2.8963 4.8482 16 1 8.9891 2.2736 6.0330 17 6 5.5340 5.4152 3.6140 18 6 6.8321 5.9510 3.0050 19 16 3.9332 -0.6730 -0.0076 20 6 2.2299 -1.1239 -0.0005 21 6 1.6847 -2.5288 -0.0006 22 1 -0.3634 0.0005 -1.0277 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3634 0.8897 0.5143 25 1 4.0430 2.9816 -0.5149 26 1 5.3957 1.8247 -0.5153 27 1 6.9212 3.6094 0.9517 28 1 5.5682 4.7658 0.9523 29 1 10.2061 4.0674 2.5241 30 1 4.5997 5.6768 3.1173 31 1 5.4832 5.3350 4.6999 32 1 7.6348 6.2229 3.6904 33 1 6.7521 6.5646 2.1077 34 1 1.5529 -2.8674 -1.0282 35 1 2.3831 -3.1896 0.5129 36 1 0.7237 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596343545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:36 Heat of formation + Delta-G solvation = 52.981167 kcal Electronic energy + Delta-G solvation = -17044.561472 eV Core-core repulsion = 14361.145684 eV Total energy + Delta-G solvation = -2683.415788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.87998 -36.56830 -33.90979 -31.93363 -30.46345 -29.19939 -27.63441 -25.34142 -25.00744 -22.73221 -21.10713 -19.27720 -18.79559 -17.91368 -16.30459 -15.63075 -15.14664 -14.71284 -14.62411 -13.97199 -13.78052 -13.61188 -13.35403 -13.12118 -13.02056 -12.93117 -12.55579 -12.19242 -12.08558 -11.78250 -11.35921 -11.05899 -10.98066 -10.89797 -10.46653 -10.20029 -9.70553 -9.52958 -9.47691 -9.11952 -8.81918 -8.49783 -8.40508 -8.01551 -6.85414 -6.04673 -4.09793 0.62745 1.36510 1.80002 2.21371 3.00890 3.31035 3.37912 3.40419 3.42578 4.06417 4.42628 4.81494 4.93713 4.96754 5.23174 5.24516 5.27011 5.32823 5.38704 5.49210 5.60861 5.67573 5.73959 5.90235 5.95976 6.20695 6.28231 6.39344 6.52731 6.74084 6.80627 7.06719 7.39563 7.48657 7.81853 7.88869 8.39694 8.92233 9.56520 11.04460 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004255 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.452973 B = 6578.922231 C = 7317.712354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.463 5.463 4 C 0.079 3.921 5 C -0.035 4.035 6 S -0.214 6.214 7 C -0.029 4.029 8 C 0.055 3.945 9 C -0.484 4.484 10 H 0.062 0.938 11 C 0.073 3.927 12 N -0.882 5.882 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.204 4.204 18 C -0.147 4.147 19 S 0.139 5.861 20 C -0.240 4.240 21 C -0.071 4.071 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 -9.208 -7.724 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 N -0.179 5.179 4 C -0.199 4.199 5 C -0.186 4.186 6 S 0.013 5.987 7 C -0.178 4.178 8 C 0.053 3.947 9 C -0.522 4.522 10 H 0.080 0.920 11 C -0.130 4.130 12 N -0.519 5.519 13 Si 0.715 3.285 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.242 4.242 18 C -0.187 4.187 19 S 0.395 5.605 20 C -0.362 4.362 21 C -0.130 4.130 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.130 -9.689 -6.956 17.012 hybrid contribution 0.392 0.203 -0.573 0.723 sum -11.738 -9.485 -7.529 16.865 Atomic orbital electron populations 1.20335 0.87355 1.03238 1.02586 1.20126 0.98033 0.86230 1.02634 1.66092 1.04301 1.31492 1.15987 1.25985 0.93494 0.97357 1.03096 1.21859 0.98013 0.96704 1.02015 1.87223 1.58653 1.48364 1.04454 1.23177 0.97564 0.94534 1.02492 1.18432 0.96391 0.89596 0.90321 1.20387 0.91312 1.20373 1.20145 0.91990 1.24933 0.97812 0.95533 0.94741 1.70005 1.09364 1.42319 1.30185 0.86670 0.79407 0.80839 0.81582 1.20520 1.21270 1.19824 1.23027 0.93077 1.08826 0.99261 1.22577 0.97067 0.98204 1.00823 1.84030 1.06063 1.02453 1.67905 1.25713 0.95563 1.00895 1.13991 1.20198 1.01055 0.89167 1.02569 0.90897 0.90848 0.90606 0.87984 0.88499 0.89610 0.93124 0.93066 0.91341 0.90257 0.89758 0.91837 0.90821 0.91192 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.06 36.00 0.36 -0.39 16 2 C 0.06 0.85 6.74 -84.22 -0.57 0.28 16 3 N -0.46 -7.60 10.53 -8.06 -0.08 -7.68 16 4 C 0.08 1.27 6.65 -13.46 -0.09 1.18 16 5 C -0.04 -0.58 6.52 36.01 0.23 -0.34 16 6 S -0.21 -4.40 21.41 -107.50 -2.30 -6.70 16 7 C -0.03 -0.64 5.80 37.16 0.22 -0.43 16 8 C 0.05 1.33 1.34 -155.66 -0.21 1.12 16 9 C -0.48 -13.08 8.49 -34.44 -0.29 -13.37 16 10 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 11 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 12 N -0.88 -24.40 12.90 55.43 0.71 -23.68 16 13 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.20 -4.51 9.96 -26.70 -0.27 -4.77 16 18 C -0.15 -3.39 9.40 -26.69 -0.25 -3.64 16 19 S 0.14 1.93 23.18 -107.50 -2.49 -0.56 16 20 C -0.24 -2.96 6.59 -35.92 -0.24 -3.20 16 21 C -0.07 -0.59 10.10 36.00 0.36 -0.23 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.56 6.72 -51.93 -0.35 0.22 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 27 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 28 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 29 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 32 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.54 6.76 -51.93 -0.35 0.19 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -29.46 333.19 -10.31 -39.77 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.32 Total: -0.31 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.83 Total: -21.93 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.63 Total: -31.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -4.79 Total: -7.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.46 -10.31 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596343545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.756 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds