Wall clock time and date at job start Tue Mar 31 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31789 * 122.74822 * 2 1 4 4 C 1.29022 * 117.12283 * 180.02562 * 3 2 1 5 5 C 1.50703 * 124.91270 * 179.97438 * 4 3 2 6 6 S 1.81401 * 109.47152 * 90.00526 * 5 4 3 7 7 C 1.81395 * 103.00147 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47261 * 179.97438 * 7 6 5 9 9 C 1.50705 * 115.54884 * 65.32856 * 8 7 6 10 10 H 1.08001 * 119.99673 * 265.65480 * 9 8 7 11 11 C 1.37878 * 119.99904 * 85.65137 * 9 8 7 12 12 N 1.31515 * 120.00392 * 353.68662 * 11 9 8 13 13 Si 1.86804 * 119.99730 * 173.68555 * 11 9 8 14 14 H 1.48506 * 109.47046 * 90.00015 * 13 11 9 15 15 H 1.48498 * 109.47123 * 210.00080 * 13 11 9 16 16 H 1.48495 * 109.47147 * 330.00152 * 13 11 9 17 17 C 1.52996 * 117.50064 * 279.65937 * 8 7 6 18 18 C 1.52999 * 117.49995 * 210.99857 * 8 7 6 19 19 S 1.70976 * 110.16786 * 0.23248 * 4 3 2 20 20 C 1.33635 * 122.74836 * 180.02562 * 2 1 3 21 21 C 1.50697 * 126.04242 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47562 * 89.97383 * 1 2 3 23 23 H 1.09002 * 109.46877 * 209.97119 * 1 2 3 24 24 H 1.09004 * 109.47504 * 329.96938 * 1 2 3 25 25 H 1.08989 * 109.47052 * 330.00027 * 5 4 3 26 26 H 1.09007 * 109.46601 * 209.99845 * 5 4 3 27 27 H 1.09002 * 109.46503 * 299.99815 * 7 6 5 28 28 H 1.08996 * 109.47675 * 59.99157 * 7 6 5 29 29 H 0.96996 * 119.99981 * 175.01934 * 12 11 9 30 30 H 1.09004 * 117.49518 * 359.97438 * 17 8 7 31 31 H 1.08997 * 117.50044 * 145.02160 * 17 8 7 32 32 H 1.08998 * 117.49568 * 214.98147 * 18 8 7 33 33 H 1.08995 * 117.49856 * 359.97224 * 18 8 7 34 34 H 1.08998 * 109.47243 * 90.00043 * 21 20 2 35 35 H 1.08995 * 109.47012 * 210.00176 * 21 20 2 36 36 H 1.09002 * 109.46842 * 330.00263 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 -0.0005 5 6 4.4834 2.1273 -0.0012 6 16 4.8773 2.5870 1.7088 7 6 6.0480 3.9573 1.5037 8 6 6.4832 4.4666 2.8792 9 6 7.2760 3.4925 3.7121 10 1 6.7736 2.8651 4.4334 11 6 8.6425 3.4021 3.5530 12 7 9.2385 4.0732 2.5917 13 14 9.6476 2.3266 4.7030 14 1 9.7413 0.9547 4.1421 15 1 11.0112 2.8963 4.8482 16 1 8.9891 2.2736 6.0330 17 6 5.5340 5.4152 3.6140 18 6 6.8321 5.9510 3.0050 19 16 3.9332 -0.6730 -0.0076 20 6 2.2299 -1.1239 -0.0005 21 6 1.6847 -2.5288 -0.0006 22 1 -0.3634 0.0005 -1.0277 23 1 -0.3633 -0.8903 0.5134 24 1 -0.3634 0.8897 0.5143 25 1 4.0430 2.9816 -0.5149 26 1 5.3957 1.8247 -0.5153 27 1 6.9212 3.6094 0.9517 28 1 5.5682 4.7658 0.9523 29 1 10.2061 4.0674 2.5241 30 1 4.5997 5.6768 3.1173 31 1 5.4832 5.3350 4.6999 32 1 7.6348 6.2229 3.6904 33 1 6.7521 6.5646 2.1077 34 1 1.5529 -2.8674 -1.0282 35 1 2.3831 -3.1896 0.5129 36 1 0.7237 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596343545.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:36 Heat of formation + Delta-G solvation = 38.250168 kcal Electronic energy + Delta-G solvation = -17045.200256 eV Core-core repulsion = 14361.145684 eV Total energy + Delta-G solvation = -2684.054572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93959 -38.42308 -34.90329 -33.98716 -31.46342 -30.14964 -29.37498 -27.36416 -25.91686 -23.86849 -22.92619 -21.13809 -19.86759 -18.99566 -18.15467 -17.10696 -16.62249 -16.32037 -15.83515 -15.68064 -15.13185 -14.93670 -14.69292 -14.36919 -13.92354 -13.81221 -13.76323 -13.47227 -13.41159 -13.04263 -12.87603 -12.82623 -12.78302 -12.34749 -12.02465 -11.99061 -11.55297 -11.07592 -10.72821 -10.68525 -10.45503 -10.20308 -9.87473 -9.49520 -8.48295 -8.10368 -6.20248 -0.50190 0.30685 0.73286 0.84428 1.41171 1.43548 1.52606 1.76194 1.93464 2.44803 2.96705 3.18512 3.53986 3.79910 4.02278 4.07569 4.15774 4.19059 4.38825 4.41815 4.60217 4.60308 4.68799 4.69268 4.80742 4.92146 4.93611 5.00253 5.02362 5.05514 5.23191 5.43226 5.57759 5.62743 5.78425 6.39305 6.74031 6.83296 7.47760 8.97905 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.004255 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.452973 B = 6578.922231 C = 7317.712354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 N -0.483 5.483 4 C 0.045 3.955 5 C -0.017 4.017 6 S -0.251 6.251 7 C -0.017 4.017 8 C 0.028 3.972 9 C -0.497 4.497 10 H 0.045 0.955 11 C 0.033 3.967 12 N -0.904 5.904 13 Si 0.941 3.059 14 H -0.277 1.277 15 H -0.281 1.281 16 H -0.273 1.273 17 C -0.185 4.185 18 C -0.147 4.147 19 S 0.142 5.858 20 C -0.221 4.221 21 C -0.073 4.073 22 H 0.087 0.913 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 -10.761 -8.231 19.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 N -0.199 5.199 4 C -0.233 4.233 5 C -0.168 4.168 6 S -0.024 6.024 7 C -0.165 4.165 8 C 0.026 3.974 9 C -0.535 4.535 10 H 0.063 0.937 11 C -0.168 4.168 12 N -0.542 5.542 13 Si 0.767 3.233 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.223 4.223 18 C -0.187 4.187 19 S 0.397 5.603 20 C -0.343 4.343 21 C -0.132 4.132 22 H 0.106 0.894 23 H 0.117 0.883 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.608 -11.227 -7.453 19.151 hybrid contribution 0.740 0.569 -0.456 1.039 sum -12.869 -10.658 -7.909 18.486 Atomic orbital electron populations 1.20449 0.84868 1.04055 1.03805 1.20710 0.99690 0.85884 1.03431 1.66090 1.04669 1.33366 1.15810 1.25837 0.93587 0.98115 1.05719 1.21765 0.98840 0.97534 0.98636 1.87195 1.57938 1.48216 1.09010 1.22879 0.97161 0.95501 1.01005 1.18542 0.97676 0.89694 0.91489 1.20532 0.91930 1.20766 1.20227 0.93691 1.25519 0.98646 0.96654 0.95963 1.70082 1.09458 1.43484 1.31148 0.85834 0.78226 0.79384 0.79874 1.20334 1.20670 1.19792 1.22999 0.93350 1.06855 0.99066 1.22508 0.97113 0.97861 1.01169 1.83959 1.07741 1.01106 1.67491 1.26282 0.94258 1.02582 1.11212 1.20428 1.01979 0.86550 1.04278 0.89422 0.88290 0.91535 0.87280 0.87516 0.91953 0.91428 0.93078 0.89283 0.90593 0.91754 0.90256 0.88773 0.90438 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.06 71.24 0.72 -0.54 16 2 C 0.03 0.88 6.74 41.52 0.28 1.16 16 3 N -0.48 -15.45 10.53 -179.40 -1.89 -17.34 16 4 C 0.04 1.41 6.65 88.52 0.59 2.00 16 5 C -0.02 -0.56 6.52 71.24 0.46 -0.09 16 6 S -0.25 -10.36 21.41 -56.49 -1.21 -11.57 16 7 C -0.02 -0.75 5.80 71.98 0.42 -0.33 16 8 C 0.03 1.35 1.34 -52.93 -0.07 1.28 16 9 C -0.50 -27.22 8.49 25.60 0.22 -27.00 16 10 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 11 C 0.03 1.78 5.39 84.65 0.46 2.24 16 12 N -0.90 -50.55 12.90 21.45 0.28 -50.27 16 13 Si 0.94 43.60 29.55 68.60 2.03 45.63 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 17 C -0.19 -8.06 9.96 30.62 0.30 -7.76 16 18 C -0.15 -6.76 9.40 30.62 0.29 -6.47 16 19 S 0.14 3.77 23.18 -56.49 -1.31 2.46 16 20 C -0.22 -4.95 6.59 24.64 0.16 -4.78 16 21 C -0.07 -0.95 10.10 71.24 0.72 -0.24 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.10 1.16 6.72 -2.39 -0.02 1.14 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.11 3.35 8.14 -2.40 -0.02 3.33 16 26 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 27 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 29 H 0.26 13.95 8.32 -92.71 -0.77 13.17 16 30 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.93 6.76 -2.39 -0.02 0.92 16 Total: -1.00 -63.40 333.19 3.50 -59.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.06 Total: 11.73 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 4.54 Total: -40.54 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -1.61 Total: -67.61 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -2.52 Total: -9.11 kcal Total: -63.40 3.50 -59.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596343545.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.154 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds