Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.50701 * 109.46947 * 240.00783 * 2 1 3 5 5 H 1.08006 * 119.99395 * 239.99724 * 4 2 1 6 6 C 1.37873 * 120.00316 * 59.99691 * 4 2 1 7 7 N 1.31514 * 120.00357 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47114 * 90.00064 * 8 6 4 10 10 H 1.48497 * 109.47178 * 210.00201 * 8 6 4 11 11 H 1.48510 * 109.47010 * 329.99925 * 8 6 4 12 12 N 1.46888 * 109.47401 * 120.00362 * 2 1 3 13 13 C 1.46903 * 111.00278 * 275.00170 * 12 2 1 14 14 C 1.50703 * 109.47535 * 179.97438 * 13 12 2 15 15 O 1.21278 * 119.99574 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99933 * 179.97438 * 14 13 12 17 17 C 1.39457 * 119.99884 * 174.91914 * 16 14 13 18 18 C 1.39026 * 119.68305 * 185.07385 * 17 16 14 19 19 C 1.38354 * 119.11230 * 180.02562 * 18 17 16 20 20 C 1.38928 * 118.48943 * 359.97438 * 19 18 17 21 21 Cl 1.73594 * 120.36165 * 179.97438 * 20 19 18 22 22 C 1.38189 * 119.28083 * 0.02562 * 20 19 18 23 23 N 1.31936 * 120.83028 * 359.71971 * 22 20 19 24 24 H 1.09004 * 109.47568 * 59.99605 * 1 2 3 25 25 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47303 * 299.99548 * 1 2 3 27 27 H 0.96996 * 120.00571 * 179.97438 * 7 6 4 28 28 H 1.00896 * 111.00605 * 151.04764 * 12 2 1 29 29 H 1.09003 * 109.47267 * 299.99979 * 13 12 2 30 30 H 1.08998 * 109.47254 * 59.99568 * 13 12 2 31 31 H 0.97001 * 120.00275 * 354.92384 * 16 14 13 32 32 H 1.07998 * 120.44397 * 359.97206 * 18 17 16 33 33 H 1.08006 * 120.75320 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.58174 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.3426 -2.1613 -4.4120 10 1 2.4864 -0.1409 -5.1123 11 1 3.6293 -1.7580 -3.7124 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3468 14 6 2.5874 -0.5220 3.5560 15 8 2.8678 -1.6988 3.4700 16 7 2.7283 0.1202 4.7324 17 6 3.0935 -0.5904 5.8754 18 6 3.1341 0.0570 7.1050 19 6 3.4986 -0.6592 8.2312 20 6 3.8109 -2.0054 8.0881 21 17 4.2750 -2.9500 9.4686 22 6 3.7492 -2.5840 6.8347 23 7 3.3933 -1.8759 5.7799 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1621 -3.4843 28 1 2.9173 -1.1205 1.0286 29 1 2.7588 1.0461 2.1183 30 1 1.0871 0.6162 2.5525 31 1 2.5756 1.0767 4.7842 32 1 2.8854 1.1053 7.1800 33 1 3.5385 -0.1829 9.1997 34 1 3.9914 -3.6299 6.7178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = 11.200916 kcal Electronic energy + Delta-G solvation = -18940.903966 eV Core-core repulsion = 15707.339529 eV Total energy + Delta-G solvation = -3233.564437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93985 -39.08210 -36.86465 -35.72373 -34.77938 -32.74728 -32.52028 -30.37918 -28.96431 -25.93472 -25.01429 -24.22244 -23.06099 -20.52247 -19.80049 -18.40581 -17.36043 -16.88989 -16.45132 -15.76632 -15.60636 -14.86990 -14.82090 -14.45381 -14.02765 -13.59575 -13.38996 -13.20404 -12.89638 -12.57261 -12.39576 -11.81838 -11.52363 -11.30961 -10.95498 -10.75706 -10.59251 -10.41296 -10.18608 -10.17133 -10.15038 -10.00935 -9.14540 -8.86866 -8.50420 -8.39794 -7.37159 -6.06077 -4.12078 0.68209 0.91888 1.80927 2.73414 2.79466 3.30259 3.36417 3.40568 3.57767 4.13168 4.39355 4.45439 4.57517 4.59303 5.00743 5.23171 5.26869 5.31935 5.46351 5.57839 5.75632 5.78375 5.89212 6.45751 6.78128 6.99379 7.06047 7.15704 7.40495 7.74912 7.79227 7.84522 8.21816 8.30347 8.32970 8.59288 8.97453 9.54123 11.00464 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.044510 B = 0.002746 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.915018 B =10192.891983 C =10617.138161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.047 3.953 14 C 0.499 3.501 15 O -0.450 6.450 16 N -0.666 5.666 17 C 0.375 3.625 18 C -0.203 4.203 19 C -0.037 4.037 20 C -0.132 4.132 21 Cl -0.064 7.064 22 C 0.154 3.846 23 N -0.462 5.462 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.003 0.997 27 H 0.261 0.739 28 H 0.342 0.658 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 1.473 22.665 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.306 5.306 13 C -0.086 4.086 14 C 0.285 3.715 15 O -0.315 6.315 16 N -0.314 5.314 17 C 0.143 3.857 18 C -0.226 4.226 19 C -0.064 4.064 20 C -0.163 4.163 21 Cl -0.035 7.035 22 C -0.006 4.006 23 N -0.176 5.176 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.255 0.745 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.094 0.010 21.735 22.117 hybrid contribution 0.967 1.043 -0.018 1.422 sum 5.061 1.053 21.717 22.323 Atomic orbital electron populations 1.21747 0.97708 0.99643 0.99363 1.19159 0.92743 0.92292 0.85209 0.97937 1.21251 1.31553 1.12634 0.90255 0.91982 1.24906 0.94998 0.94977 0.99081 1.69885 1.36692 1.22867 1.23565 0.86485 0.79323 0.79310 0.82230 1.20549 1.21284 1.19849 1.60524 1.33545 1.31626 1.04905 1.21827 1.01414 0.94966 0.90432 1.21499 0.77826 0.88530 0.83623 1.90799 1.42827 1.15088 1.82820 1.43996 1.68117 1.12206 1.07084 1.18711 0.91502 0.89094 0.86358 1.21484 1.08127 1.01985 0.91053 1.21241 0.94028 0.91715 0.99371 1.21959 1.10066 0.93912 0.90322 1.98365 1.90928 1.72196 1.42034 1.22765 0.92316 1.00251 0.85278 1.67940 1.13413 1.05464 1.30830 0.89906 0.94722 0.97768 0.92880 0.83918 0.92977 0.88517 0.74527 0.83721 0.83610 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.30 2.60 -68.87 -0.18 5.12 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -14.25 8.59 -34.44 -0.30 -14.54 16 5 H 0.06 1.71 7.62 -52.48 -0.40 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.67 -14.65 5.93 -109.23 -0.65 -15.29 16 13 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 14 C 0.50 8.07 7.83 -10.99 -0.09 7.99 16 15 O -0.45 -9.17 14.47 5.56 0.08 -9.09 16 16 N -0.67 -7.84 5.39 -11.42 -0.06 -7.90 16 17 C 0.38 4.64 7.42 -154.67 -1.15 3.49 16 18 C -0.20 -1.74 9.94 -39.25 -0.39 -2.13 16 19 C -0.04 -0.30 9.97 -39.28 -0.39 -0.69 16 20 C -0.13 -1.28 6.34 -39.34 -0.25 -1.53 16 21 Cl -0.06 -0.55 28.99 -51.86 -1.50 -2.05 16 22 C 0.15 1.81 10.97 -17.53 -0.19 1.62 16 23 N -0.46 -6.85 7.89 -12.33 -0.10 -6.95 16 24 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.34 7.67 7.92 -39.29 -0.31 7.36 16 29 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 30 H 0.10 1.50 7.44 -51.93 -0.39 1.11 16 31 H 0.42 3.12 8.70 -40.82 -0.36 2.76 16 32 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -32.74 310.65 -8.46 -41.20 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.80 Total: 4.64 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.72 Total: -1.06 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.18 Total: -54.61 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.74 -8.46 -41.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.401 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds