Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30620 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48503 * 109.47045 * 89.99956 * 3 2 1 5 5 H 1.48498 * 109.47217 * 209.99965 * 3 2 1 6 6 H 1.48506 * 109.47041 * 330.00253 * 3 2 1 7 7 C 1.40295 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00433 * 159.90976 * 7 2 1 9 9 C 1.40862 * 119.99731 * 339.90673 * 7 2 1 10 10 C 1.40704 * 120.33299 * 325.50721 * 9 7 2 11 11 C 1.37595 * 119.88753 * 180.02562 * 10 9 7 12 12 C 1.38835 * 120.58501 * 359.97438 * 11 10 9 13 13 C 1.38205 * 120.68243 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08333 * 359.71619 * 13 12 11 15 15 C 1.47288 * 120.28614 * 180.27751 * 14 13 12 16 16 O 1.21528 * 119.99420 * 174.57852 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.58297 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46971 * 179.97438 * 18 17 15 20 20 C 1.38677 * 120.41635 * 269.72123 * 19 18 17 21 21 C 1.38630 * 118.41602 * 179.78484 * 20 19 18 22 22 C 1.38228 * 119.16381 * 0.50906 * 21 20 19 23 23 N 1.31854 * 120.76315 * 359.72730 * 22 21 20 24 24 C 1.31885 * 121.72436 * 359.97438 * 23 22 21 25 25 H 0.97005 * 119.99737 * 174.71160 * 1 2 3 26 26 H 1.08008 * 120.05760 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.70899 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.65884 * 179.97438 * 12 11 10 29 29 H 1.07995 * 119.95698 * 179.97438 * 13 12 11 30 30 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 31 31 H 1.08993 * 109.47127 * 59.99651 * 18 17 15 32 32 H 1.07993 * 120.79508 * 0.02562 * 20 19 18 33 33 H 1.07999 * 120.41734 * 180.21372 * 21 20 19 34 34 H 1.07997 * 119.61966 * 179.74815 * 22 21 20 35 35 H 1.08001 * 119.61574 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0464 1.4001 5 1 3.5377 1.4402 -0.7000 6 1 1.4375 2.6527 -0.7000 7 6 2.0077 -1.2150 -0.0005 8 1 3.0385 -1.2433 -0.3218 9 6 1.3677 -2.3979 0.4180 10 6 0.4090 -2.3612 1.4473 11 6 -0.2101 -3.5223 1.8493 12 6 0.1018 -4.7341 1.2476 13 6 1.0397 -4.7977 0.2346 14 6 1.6797 -3.6386 -0.1982 15 6 2.6755 -3.7003 -1.2817 16 8 3.1581 -2.6757 -1.7224 17 8 3.0516 -4.8932 -1.7844 18 6 4.0376 -4.8781 -2.8502 19 6 4.3323 -6.2915 -3.2819 20 6 5.3505 -7.0126 -2.6765 21 6 5.5829 -8.3111 -3.1028 22 6 4.8047 -8.8365 -4.1172 23 7 3.8480 -8.1197 -4.6735 24 6 3.5949 -6.8836 -4.2894 25 1 -0.4850 -0.8365 -0.0774 26 1 0.1601 -1.4233 1.9215 27 1 -0.9453 -3.4909 2.6399 28 1 -0.3931 -5.6364 1.5752 29 1 1.2736 -5.7465 -0.2250 30 1 3.6485 -4.3129 -3.6971 31 1 4.9538 -4.4097 -2.4909 32 1 5.9456 -6.5745 -1.8889 33 1 6.3653 -8.9031 -2.6513 34 1 4.9821 -9.8459 -4.4579 35 1 2.8032 -6.3272 -4.7690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733428759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -39.286854 kcal Electronic energy + Delta-G solvation = -20781.893366 eV Core-core repulsion = 17516.279713 eV Total energy + Delta-G solvation = -3265.613652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33862 -39.37653 -37.53563 -35.53319 -34.03437 -32.99319 -31.88281 -30.21454 -29.49658 -26.87792 -25.35327 -23.69513 -23.00746 -21.88980 -21.09157 -19.90376 -18.09411 -17.26136 -16.76590 -16.64421 -16.06675 -15.22346 -15.06294 -14.73502 -14.23674 -14.05489 -13.85221 -13.65803 -13.19561 -12.95445 -12.74939 -12.51772 -12.21095 -11.81112 -11.60135 -11.24449 -11.01241 -10.80336 -10.45969 -10.27539 -10.11088 -9.99663 -9.80849 -9.57107 -9.27363 -9.17492 -8.88805 -7.91060 -7.73249 -7.30524 -4.62392 0.88169 1.13121 2.03690 2.66902 3.12989 3.23603 3.34117 3.35434 3.72551 3.89718 3.94704 4.31213 4.49789 4.66681 4.71566 4.85064 4.88255 5.24404 5.32336 5.46344 5.57569 5.65855 5.94250 5.94835 5.99010 6.14823 6.14846 6.40946 6.53163 6.67538 6.87068 7.10877 7.24996 7.42031 7.51329 7.66986 7.76146 7.81229 8.00512 8.08808 8.55944 8.68471 8.94566 9.90279 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.004259 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.092594 B = 6572.836337 C = 7501.555334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.032 3.968 3 Si 1.073 2.927 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.200 4.200 11 C -0.070 4.070 12 C -0.260 4.260 13 C -0.023 4.023 14 C -0.255 4.255 15 C 0.504 3.496 16 O -0.513 6.513 17 O -0.365 6.365 18 C 0.112 3.888 19 C -0.136 4.136 20 C -0.054 4.054 21 C -0.177 4.177 22 C 0.099 3.901 23 N -0.488 5.488 24 C 0.121 3.879 25 H 0.300 0.700 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -9.856 -3.687 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.190 4.190 3 Si 0.896 3.104 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.122 0.878 9 C 0.118 3.882 10 C -0.219 4.219 11 C -0.089 4.089 12 C -0.279 4.279 13 C -0.041 4.041 14 C -0.257 4.257 15 C 0.354 3.646 16 O -0.404 6.404 17 O -0.284 6.284 18 C 0.037 3.963 19 C -0.138 4.138 20 C -0.080 4.080 21 C -0.197 4.197 22 C -0.058 4.058 23 N -0.196 5.196 24 C -0.036 4.036 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.007 -8.283 -4.475 11.736 hybrid contribution 0.682 -1.422 0.632 1.699 sum 7.689 -9.705 -3.843 12.965 Atomic orbital electron populations 1.70360 1.08249 1.34512 1.27599 1.27316 0.95655 1.04740 0.91329 0.83515 0.75716 0.73008 0.78178 1.19881 1.19693 1.19959 1.21221 1.01783 0.92183 1.33981 0.87801 1.17464 0.89823 0.91583 0.89344 1.21209 1.03094 0.97302 1.00301 1.20812 0.97272 0.93138 0.97641 1.20335 1.06259 0.96812 1.04508 1.20907 0.93180 0.96089 0.93951 1.18672 1.07970 0.95793 1.03310 1.21355 0.81205 0.80063 0.81927 1.90750 1.54883 1.34427 1.60292 1.86659 1.56236 1.35805 1.49733 1.21435 0.92522 0.91915 0.90412 1.20686 0.97688 0.97037 0.98372 1.21587 0.95626 0.93728 0.97043 1.22145 1.01912 0.96288 0.99310 1.22816 0.90880 0.99504 0.92612 1.67747 1.17105 1.06822 1.27937 1.22760 0.96678 0.90777 0.93377 0.88612 0.87277 0.88578 0.88556 0.87864 0.90515 0.90723 0.84550 0.84607 0.82729 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.38 12.59 55.57 0.70 -19.68 16 2 C 0.03 0.81 5.02 -17.29 -0.09 0.73 16 3 Si 1.07 21.69 29.98 -169.99 -5.10 16.59 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.41 7.60 -37.82 -0.29 -12.69 16 8 H 0.10 2.87 6.01 -52.49 -0.32 2.55 16 9 C 0.12 3.18 5.15 -106.53 -0.55 2.64 16 10 C -0.20 -4.86 7.90 -38.89 -0.31 -5.17 16 11 C -0.07 -1.51 10.01 -39.60 -0.40 -1.91 16 12 C -0.26 -5.48 10.03 -39.37 -0.39 -5.88 16 13 C -0.02 -0.50 9.60 -39.20 -0.38 -0.88 16 14 C -0.25 -6.28 5.92 -104.39 -0.62 -6.90 16 15 C 0.50 11.88 7.84 34.41 0.27 12.15 16 16 O -0.51 -13.09 13.40 -19.29 -0.26 -13.35 16 17 O -0.36 -7.23 9.47 -40.78 -0.39 -7.62 16 18 C 0.11 1.77 5.63 36.01 0.20 1.97 16 19 C -0.14 -1.83 5.54 -104.48 -0.58 -2.41 16 20 C -0.05 -0.62 9.86 -39.27 -0.39 -1.01 16 21 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 22 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 23 N -0.49 -6.43 10.36 -13.25 -0.14 -6.57 16 24 C 0.12 1.61 10.86 -17.55 -0.19 1.42 16 25 H 0.30 7.99 6.64 -40.82 -0.27 7.71 16 26 H 0.11 2.67 7.00 -52.48 -0.37 2.31 16 27 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 28 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.10 2.07 7.61 -52.49 -0.40 1.67 16 30 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -29.67 311.18 -8.31 -37.98 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.53 Total: 7.19 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -4.30 Total: -19.24 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.56 Total: -26.24 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.64 Total: -20.97 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.10 Total: 16.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.67 -8.31 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733428759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.305 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds