Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46827 * 239.99974 * 3 2 1 5 5 H 1.48505 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46952 * 119.99858 * 3 2 1 7 7 C 1.40245 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00319 * 197.86975 * 7 2 1 9 9 C 1.41100 * 119.99549 * 17.85976 * 7 2 1 10 10 C 1.40898 * 120.09772 * 204.64035 * 9 7 2 11 11 C 1.36298 * 119.89621 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.10317 * 0.02562 * 11 10 9 13 13 C 1.47508 * 119.90094 * 179.97438 * 12 11 10 14 14 O 1.21503 * 119.99850 * 359.97438 * 13 12 11 15 15 O 1.34773 * 119.99654 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99673 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47120 * 180.02562 * 16 15 13 18 18 C 1.38671 * 120.41865 * 269.72157 * 17 16 15 19 19 C 1.38634 * 118.42535 * 179.78455 * 18 17 16 20 20 C 1.38226 * 119.15410 * 0.51030 * 19 18 17 21 21 N 1.31856 * 120.76888 * 359.72424 * 20 19 18 22 22 C 1.31890 * 121.72111 * 0.02562 * 21 20 19 23 23 C 1.40066 * 120.19460 * 0.24525 * 12 11 10 24 24 C 1.36304 * 120.10509 * 359.49454 * 23 12 11 25 25 H 0.96998 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.04937 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.94829 * 179.97438 * 11 10 9 28 28 H 1.09008 * 109.46982 * 299.99679 * 16 15 13 29 29 H 1.08995 * 109.47304 * 59.99896 * 16 15 13 30 30 H 1.08008 * 120.78701 * 0.02562 * 18 17 16 31 31 H 1.07993 * 120.41924 * 180.21568 * 19 18 17 32 32 H 1.07999 * 119.61332 * 179.75397 * 20 19 18 33 33 H 1.08001 * 119.61125 * 179.97438 * 22 21 20 34 34 H 1.08006 * 119.94544 * 179.74590 * 23 12 11 35 35 H 1.08000 * 120.05015 * 180.23544 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0077 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3532 -2.4072 -0.3737 10 6 1.8269 -3.6494 0.0928 11 6 1.1919 -4.7990 -0.2717 12 6 0.0703 -4.7469 -1.1091 13 6 -0.6132 -5.9938 -1.5013 14 8 -0.2029 -7.0641 -1.0983 15 8 -1.6929 -5.9458 -2.3065 16 6 -2.3144 -7.2118 -2.6517 17 6 -3.4966 -6.9620 -3.5523 18 6 -4.7593 -6.7633 -3.0146 19 6 -5.8167 -6.5324 -3.8809 20 6 -5.5807 -6.5187 -5.2428 21 7 -4.3671 -6.7163 -5.7192 22 6 -3.3372 -6.9340 -4.9246 23 6 -0.4007 -3.5146 -1.5798 24 6 0.2249 -2.3595 -1.2162 25 1 -0.4850 0.8400 -0.0004 26 1 2.6919 -3.6906 0.7382 27 1 1.5546 -5.7517 0.0851 28 1 -1.5912 -7.8427 -3.1687 29 1 -2.6489 -7.7122 -1.7429 30 1 -4.9146 -6.7841 -1.9459 31 1 -6.8129 -6.3702 -3.4969 32 1 -6.3997 -6.3435 -5.9246 33 1 -2.3579 -7.0922 -5.3515 34 1 -1.2634 -3.4794 -2.2287 35 1 -0.1414 -1.4095 -1.5766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758687428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -41.176999 kcal Electronic energy + Delta-G solvation = -20236.232313 eV Core-core repulsion = 16970.536698 eV Total energy + Delta-G solvation = -3265.695615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37468 -39.47333 -37.49002 -35.78169 -33.98315 -33.05029 -31.90705 -30.35732 -29.53901 -27.16921 -25.84087 -23.71371 -22.70983 -21.82389 -20.98614 -19.99023 -17.59457 -17.30872 -16.96014 -16.68826 -16.36133 -15.50971 -15.33252 -14.99837 -14.09760 -13.99630 -13.70507 -13.40661 -13.20761 -12.99711 -12.79169 -12.50412 -12.14780 -11.96100 -11.64248 -11.44656 -11.31161 -11.05363 -10.73680 -10.28540 -10.19215 -10.01400 -9.67092 -9.61844 -9.50694 -9.40828 -9.15479 -7.78983 -7.67544 -7.12753 -4.71072 0.85925 1.12065 2.01835 2.85638 2.90328 2.93387 3.00060 3.27810 3.59129 3.68274 3.85377 4.29242 4.43181 4.64729 4.66708 4.82994 4.85257 5.21604 5.38624 5.47840 5.50528 5.62667 5.93279 5.96153 6.11257 6.17597 6.22852 6.51486 6.71064 6.76632 6.95269 6.97685 7.06932 7.37958 7.63520 7.74729 7.79912 7.80284 7.97281 8.31937 8.53072 8.66011 8.68873 9.78410 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.003452 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.632154 B = 8108.174259 C = 9026.600133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.087 0.913 9 C 0.132 3.868 10 C -0.240 4.240 11 C -0.017 4.017 12 C -0.276 4.276 13 C 0.515 3.485 14 O -0.552 6.552 15 O -0.355 6.355 16 C 0.112 3.888 17 C -0.139 4.139 18 C -0.052 4.052 19 C -0.176 4.176 20 C 0.101 3.899 21 N -0.488 5.488 22 C 0.122 3.878 23 C -0.042 4.042 24 C -0.185 4.185 25 H 0.290 0.710 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -5.830 -5.365 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.278 4.278 13 C 0.368 3.632 14 O -0.446 6.446 15 O -0.273 6.273 16 C 0.037 3.963 17 C -0.141 4.141 18 C -0.079 4.079 19 C -0.196 4.196 20 C -0.056 4.056 21 N -0.196 5.196 22 C -0.035 4.035 23 C -0.061 4.061 24 C -0.204 4.204 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.119 0.881 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.411 -5.973 -6.160 12.015 hybrid contribution 0.040 0.611 1.054 1.218 sum -8.371 -5.363 -5.106 11.176 Atomic orbital electron populations 1.69729 1.08015 1.30503 1.30302 1.26163 0.94854 1.02098 0.91848 0.86214 0.80213 0.79174 0.80456 1.18331 1.19920 1.18548 1.19914 0.98478 0.91183 1.36526 0.89458 1.17845 0.90282 0.92182 0.86848 1.20686 1.04709 0.92445 1.08053 1.20346 0.92467 0.97407 0.93343 1.18199 1.04535 0.89184 1.15924 1.21603 0.76887 0.90268 0.74471 1.90698 1.66073 1.32126 1.55741 1.86677 1.43347 1.33748 1.63549 1.21485 0.91862 0.85336 0.97621 1.20648 0.94913 1.03088 0.95473 1.21590 0.91911 0.93534 1.00818 1.22153 1.00271 1.02358 0.94811 1.22830 0.94508 0.94570 0.93724 1.67754 0.99817 1.11842 1.40182 1.22750 0.97920 0.93379 0.89436 1.20640 0.97093 0.91946 0.96422 1.21009 1.00071 0.97062 1.02250 0.89898 0.88030 0.87924 0.90457 0.90635 0.84513 0.84541 0.82678 0.82487 0.88129 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.99 10.96 55.56 0.61 -17.38 16 2 C 0.07 1.66 5.14 -17.31 -0.09 1.58 16 3 Si 0.92 16.82 29.60 -169.99 -5.03 11.79 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 5 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.43 -10.54 9.04 -37.74 -0.34 -10.88 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.31 5.57 -106.80 -0.60 2.72 16 10 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 11 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 12 C -0.28 -6.43 5.89 -104.75 -0.62 -7.05 16 13 C 0.52 11.20 7.89 34.51 0.27 11.47 16 14 O -0.55 -12.63 16.11 -19.27 -0.31 -12.94 16 15 O -0.35 -6.72 9.43 -40.69 -0.38 -7.11 16 16 C 0.11 1.65 5.63 36.01 0.20 1.85 16 17 C -0.14 -1.81 5.54 -104.48 -0.58 -2.39 16 18 C -0.05 -0.59 9.86 -39.28 -0.39 -0.98 16 19 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 20 C 0.10 1.05 11.18 -17.55 -0.20 0.86 16 21 N -0.49 -6.31 10.36 -13.25 -0.14 -6.45 16 22 C 0.12 1.57 10.86 -17.55 -0.19 1.38 16 23 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 24 C -0.18 -4.57 8.63 -39.27 -0.34 -4.91 16 25 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 26 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.10 2.25 7.63 -52.48 -0.40 1.84 16 28 H 0.08 1.07 8.09 -51.92 -0.42 0.65 16 29 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 30 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.10 2.17 7.59 -52.48 -0.40 1.78 16 35 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -28.40 315.97 -8.51 -36.91 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -3.63 Total: 7.07 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -4.40 Total: -16.66 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.47 Total: -23.83 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.69 Total: -20.04 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.40 -8.51 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758687428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.268 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds