Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46827 * 239.99974 * 3 2 1 5 5 H 1.48505 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46952 * 119.99858 * 3 2 1 7 7 C 1.40245 * 120.00561 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00319 * 197.86975 * 7 2 1 9 9 C 1.41100 * 119.99549 * 17.85976 * 7 2 1 10 10 C 1.40898 * 120.09772 * 204.64035 * 9 7 2 11 11 C 1.36298 * 119.89621 * 180.02562 * 10 9 7 12 12 C 1.40070 * 120.10317 * 0.02562 * 11 10 9 13 13 C 1.47508 * 119.90094 * 179.97438 * 12 11 10 14 14 O 1.21503 * 119.99850 * 359.97438 * 13 12 11 15 15 O 1.34773 * 119.99654 * 179.97438 * 13 12 11 16 16 C 1.45200 * 116.99673 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47120 * 180.02562 * 16 15 13 18 18 C 1.38671 * 120.41865 * 269.72157 * 17 16 15 19 19 C 1.38634 * 118.42535 * 179.78455 * 18 17 16 20 20 C 1.38226 * 119.15410 * 0.51030 * 19 18 17 21 21 N 1.31856 * 120.76888 * 359.72424 * 20 19 18 22 22 C 1.31890 * 121.72111 * 0.02562 * 21 20 19 23 23 C 1.40066 * 120.19460 * 0.24525 * 12 11 10 24 24 C 1.36304 * 120.10509 * 359.49454 * 23 12 11 25 25 H 0.96998 * 120.00155 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.04937 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.94829 * 179.97438 * 11 10 9 28 28 H 1.09008 * 109.46982 * 299.99679 * 16 15 13 29 29 H 1.08995 * 109.47304 * 59.99896 * 16 15 13 30 30 H 1.08008 * 120.78701 * 0.02562 * 18 17 16 31 31 H 1.07993 * 120.41924 * 180.21568 * 19 18 17 32 32 H 1.07999 * 119.61332 * 179.75397 * 20 19 18 33 33 H 1.08001 * 119.61125 * 179.97438 * 22 21 20 34 34 H 1.08006 * 119.94544 * 179.74590 * 23 12 11 35 35 H 1.08000 * 120.05015 * 180.23544 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0077 -1.2145 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3532 -2.4072 -0.3737 10 6 1.8269 -3.6494 0.0928 11 6 1.1919 -4.7990 -0.2717 12 6 0.0703 -4.7469 -1.1091 13 6 -0.6132 -5.9938 -1.5013 14 8 -0.2029 -7.0641 -1.0983 15 8 -1.6929 -5.9458 -2.3065 16 6 -2.3144 -7.2118 -2.6517 17 6 -3.4966 -6.9620 -3.5523 18 6 -4.7593 -6.7633 -3.0146 19 6 -5.8167 -6.5324 -3.8809 20 6 -5.5807 -6.5187 -5.2428 21 7 -4.3671 -6.7163 -5.7192 22 6 -3.3372 -6.9340 -4.9246 23 6 -0.4007 -3.5146 -1.5798 24 6 0.2249 -2.3595 -1.2162 25 1 -0.4850 0.8400 -0.0004 26 1 2.6919 -3.6906 0.7382 27 1 1.5546 -5.7517 0.0851 28 1 -1.5912 -7.8427 -3.1687 29 1 -2.6489 -7.7122 -1.7429 30 1 -4.9146 -6.7841 -1.9459 31 1 -6.8129 -6.3702 -3.4969 32 1 -6.3997 -6.3435 -5.9246 33 1 -2.3579 -7.0922 -5.3515 34 1 -1.2634 -3.4794 -2.2287 35 1 -0.1414 -1.4095 -1.5766 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758687428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -54.561157 kcal Electronic energy + Delta-G solvation = -20236.812694 eV Core-core repulsion = 16970.536698 eV Total energy + Delta-G solvation = -3266.275996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50105 -40.87963 -39.26288 -37.36527 -35.75618 -34.07273 -32.81404 -32.12512 -31.38371 -28.54320 -27.36547 -24.59218 -24.26103 -23.00282 -22.78946 -21.68518 -19.40910 -18.62280 -18.27609 -17.78633 -17.74139 -17.12682 -16.69806 -16.10719 -15.76477 -15.31280 -14.98312 -14.81093 -14.48482 -14.23706 -14.07583 -14.01531 -13.84117 -13.53532 -13.23841 -12.88021 -12.69727 -12.62081 -12.39165 -11.84948 -11.71782 -11.44673 -11.31439 -11.14012 -10.85207 -10.48984 -10.10650 -9.64309 -9.53968 -8.85480 -6.55998 -0.05459 0.23294 0.25431 1.12835 1.37153 1.42266 1.53045 1.88275 1.94528 2.14827 2.67508 2.86876 3.40993 3.61582 3.68028 3.74359 3.93908 4.01215 4.18731 4.33229 4.38007 4.39763 4.45470 4.60288 4.78027 4.91745 4.97483 5.10051 5.11171 5.21214 5.21950 5.38937 5.54876 5.68432 5.80640 5.90134 5.95506 6.14294 6.48272 6.69459 6.81251 6.92520 7.00416 8.09037 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.003452 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.632154 B = 8108.174259 C = 9026.600133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.460 4.460 8 H 0.094 0.906 9 C 0.106 3.894 10 C -0.250 4.250 11 C -0.021 4.021 12 C -0.292 4.292 13 C 0.521 3.479 14 O -0.567 6.567 15 O -0.359 6.359 16 C 0.110 3.890 17 C -0.156 4.156 18 C -0.060 4.060 19 C -0.168 4.168 20 C 0.097 3.903 21 N -0.512 5.512 22 C 0.109 3.891 23 C -0.039 4.039 24 C -0.203 4.203 25 H 0.300 0.700 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.505 -5.188 -5.577 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.112 0.888 9 C 0.102 3.898 10 C -0.269 4.269 11 C -0.040 4.040 12 C -0.294 4.294 13 C 0.374 3.626 14 O -0.462 6.462 15 O -0.277 6.277 16 C 0.036 3.964 17 C -0.159 4.159 18 C -0.086 4.086 19 C -0.187 4.187 20 C -0.059 4.059 21 N -0.221 5.221 22 C -0.047 4.047 23 C -0.058 4.058 24 C -0.222 4.222 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.168 0.832 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.179 0.821 34 H 0.131 0.869 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.527 -5.353 -6.379 12.654 hybrid contribution 0.230 0.347 1.074 1.152 sum -9.298 -5.006 -5.305 11.817 Atomic orbital electron populations 1.69757 1.09476 1.32083 1.30022 1.27041 0.95537 1.05162 0.90704 0.85101 0.78824 0.74572 0.80490 1.18146 1.18843 1.17884 1.20248 0.99024 0.91998 1.37303 0.88787 1.18185 0.90883 0.93214 0.87505 1.20876 1.05332 0.92290 1.08442 1.20514 0.92499 0.97727 0.93256 1.18448 1.04908 0.90022 1.16049 1.21287 0.77358 0.89386 0.74554 1.90679 1.66721 1.32415 1.56419 1.86635 1.42241 1.36295 1.62490 1.21742 0.92514 0.83658 0.98450 1.20554 0.94936 1.05126 0.95235 1.21893 0.91721 0.93051 1.01970 1.22528 1.01354 1.00566 0.94243 1.23456 0.94440 0.93091 0.94925 1.67787 1.00762 1.12838 1.40704 1.22868 0.98473 0.93802 0.89583 1.20742 0.97179 0.91676 0.96213 1.21005 1.00877 0.97135 1.03228 0.88886 0.86720 0.86879 0.89912 0.89883 0.83165 0.81053 0.79563 0.82130 0.86914 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.31 10.96 21.87 0.24 -37.07 16 2 C 0.04 1.62 5.14 85.36 0.44 2.06 16 3 Si 0.99 33.60 29.60 68.60 2.03 35.63 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 6 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 7 C -0.46 -22.47 9.04 23.46 0.21 -22.26 16 8 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 9 C 0.11 5.40 5.57 -21.28 -0.12 5.28 16 10 C -0.25 -12.00 9.73 22.47 0.22 -11.78 16 11 C -0.02 -1.00 9.52 22.26 0.21 -0.79 16 12 C -0.29 -13.72 5.89 -19.95 -0.12 -13.84 16 13 C 0.52 22.65 7.89 70.27 0.55 23.21 16 14 O -0.57 -25.78 16.11 19.83 0.32 -25.46 16 15 O -0.36 -13.50 9.43 -56.84 -0.54 -14.03 16 16 C 0.11 3.19 5.63 71.24 0.40 3.59 16 17 C -0.16 -3.94 5.54 -19.77 -0.11 -4.05 16 18 C -0.06 -1.26 9.86 22.47 0.22 -1.03 16 19 C -0.17 -2.76 10.11 22.36 0.23 -2.54 16 20 C 0.10 1.80 11.18 84.69 0.95 2.75 16 21 N -0.51 -12.64 10.36 -195.84 -2.03 -14.67 16 22 C 0.11 2.75 10.86 84.67 0.92 3.67 16 23 C -0.04 -1.86 9.55 22.26 0.21 -1.65 16 24 C -0.20 -10.27 8.63 22.47 0.19 -10.08 16 25 H 0.30 12.56 8.29 -92.71 -0.77 11.79 16 26 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 27 H 0.11 4.96 7.63 -2.91 -0.02 4.93 16 28 H 0.08 2.27 8.09 -2.38 -0.02 2.26 16 29 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.11 4.91 7.59 -2.91 -0.02 4.89 16 35 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 Total: -1.00 -60.83 315.97 5.55 -55.28 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 1.11 Total: 27.77 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.41 Total: -27.45 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -1.79 Total: -51.74 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.22 Total: -39.50 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Total: -60.83 5.55 -55.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758687428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.720 kcal (2) G-P(sol) polarization free energy of solvation -60.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds