Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48493 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47249 * 300.00061 * 3 2 1 6 6 H 1.48507 * 109.47102 * 59.99863 * 3 2 1 7 7 C 1.37879 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00262 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47329 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99618 * 90.00038 * 10 9 7 12 12 C 1.53004 * 109.47028 * 264.97415 * 11 10 9 13 13 C 1.52998 * 117.49375 * 116.25361 * 12 11 10 14 14 C 1.52995 * 117.49691 * 184.91347 * 12 11 10 15 15 C 1.34779 * 119.99975 * 270.00191 * 10 9 7 16 16 O 1.21280 * 119.99752 * 185.16460 * 15 10 9 17 17 C 1.50696 * 120.00243 * 5.16924 * 15 10 9 18 18 H 1.09001 * 109.47347 * 15.27345 * 17 15 10 19 19 F 1.39900 * 109.46966 * 255.27395 * 17 15 10 20 20 C 1.52996 * 109.47492 * 135.27512 * 17 15 10 21 21 F 1.39900 * 109.47055 * 59.99543 * 20 17 15 22 22 F 1.39897 * 109.47528 * 179.97438 * 20 17 15 23 23 F 1.39898 * 109.47099 * 300.00297 * 20 17 15 24 24 H 0.96996 * 119.99845 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47134 * 59.99569 * 9 7 2 26 26 H 1.08996 * 109.47291 * 299.99776 * 9 7 2 27 27 H 1.09003 * 109.47098 * 144.97919 * 11 10 9 28 28 H 1.08998 * 109.47546 * 24.97717 * 11 10 9 29 29 H 1.09000 * 115.55163 * 330.58920 * 12 11 10 30 30 H 1.08995 * 117.50003 * 214.99967 * 13 12 11 31 31 H 1.08999 * 117.50486 * 0.03018 * 13 12 11 32 32 H 1.09002 * 117.50105 * 359.97438 * 14 12 11 33 33 H 1.08998 * 117.49877 * 144.99867 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1694 1.2693 12 6 4.0080 -3.5126 1.6478 13 6 4.0427 -2.6750 2.9277 14 6 4.7297 -4.0424 2.8885 15 6 2.6410 -4.1249 -1.1667 16 8 3.3548 -5.1054 -1.1688 17 6 2.2438 -3.4793 -2.4691 18 1 1.8438 -2.4842 -2.2743 19 9 1.2673 -4.2595 -3.0976 20 6 3.4697 -3.3673 -3.3776 21 9 3.9830 -4.6445 -3.6277 22 9 3.1008 -2.7685 -4.5870 23 9 4.4462 -2.5872 -2.7491 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8903 27 1 2.8224 -5.2448 1.1632 28 1 1.9430 -3.9763 2.0497 29 1 4.6229 -3.1797 0.8116 30 1 4.6805 -1.7912 2.9336 31 1 3.1190 -2.5923 3.5003 32 1 4.2575 -4.8586 3.4353 33 1 5.8194 -4.0581 2.8685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764501136.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -222.275633 kcal Electronic energy + Delta-G solvation = -23905.975441 eV Core-core repulsion = 19659.800834 eV Total energy + Delta-G solvation = -4246.174606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.47493 -49.52979 -48.85508 -48.69541 -41.02752 -38.31751 -36.63226 -34.52067 -32.29923 -29.74049 -28.05512 -25.44500 -24.67021 -23.15435 -22.00906 -20.98154 -20.03053 -19.84164 -19.24508 -18.59533 -18.28546 -17.80732 -16.93292 -16.51755 -16.37134 -15.87517 -15.67427 -15.60904 -15.52440 -15.25370 -14.96855 -14.95664 -14.88919 -14.68600 -14.33971 -13.92528 -13.69703 -13.47676 -13.03926 -12.76949 -12.64758 -12.44491 -12.28424 -12.14707 -11.67038 -11.36046 -11.05344 -10.76830 -10.58720 -9.71355 -8.22959 -6.36451 0.84120 1.25975 1.41020 1.47246 1.55442 1.75510 2.21412 2.39207 2.69262 2.72326 3.01302 3.07385 3.10274 3.43592 3.78994 3.87576 4.05284 4.15605 4.36392 4.62985 4.68627 4.81631 4.85133 5.08173 5.10468 5.27419 5.32140 5.54538 5.71243 5.97222 6.21721 6.68753 6.85257 7.36111 8.83412 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.009050 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.692791 B = 3093.066461 C = 4303.616377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.031 3.969 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.571 5.571 11 C 0.150 3.850 12 C -0.175 4.175 13 C -0.168 4.168 14 C -0.157 4.157 15 C 0.496 3.504 16 O -0.548 6.548 17 C 0.034 3.966 18 H 0.166 0.834 19 F -0.162 7.162 20 C 0.453 3.547 21 F -0.166 7.166 22 F -0.164 7.164 23 F -0.168 7.168 24 H 0.269 0.731 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -4.670 0.435 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.118 3.882 10 N -0.300 5.300 11 C 0.028 3.972 12 C -0.195 4.195 13 C -0.205 4.205 14 C -0.195 4.195 15 C 0.279 3.721 16 O -0.427 6.427 17 C -0.006 4.006 18 H 0.183 0.817 19 F -0.143 7.143 20 C 0.398 3.602 21 F -0.147 7.147 22 F -0.146 7.146 23 F -0.149 7.149 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.081 -5.077 0.437 7.196 hybrid contribution 0.249 1.178 -0.389 1.265 sum 5.330 -3.899 0.049 6.604 Atomic orbital electron populations 1.69991 1.07061 1.28243 1.50048 1.25516 0.95371 1.01881 0.94316 0.85678 0.79194 0.80143 0.77808 1.19416 1.20572 1.20532 1.21616 0.93591 0.90703 1.52090 0.92074 1.19444 0.87347 0.82847 0.98578 1.48204 1.43142 1.33788 1.04825 1.21155 0.94392 0.97486 0.84118 1.22451 0.98579 1.05754 0.92690 1.22986 1.02979 0.94857 0.99718 1.23055 0.99877 0.97428 0.99116 1.20018 0.81878 0.84501 0.85702 1.90719 1.38570 1.26169 1.87277 1.22978 0.86425 1.00841 0.90404 0.81734 1.92938 1.61980 1.76725 1.82633 1.20250 0.85043 0.74695 0.80210 1.93252 1.88207 1.38799 1.94440 1.93231 1.91331 1.83669 1.46342 1.93236 1.64574 1.75035 1.82057 0.92204 0.95113 0.94173 0.89960 0.88711 0.90493 0.89372 0.88290 0.87084 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.87 13.29 21.45 0.28 -46.58 16 2 C 0.03 1.49 5.46 84.66 0.46 1.95 16 3 Si 0.95 39.45 29.54 68.60 2.03 41.47 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.54 -25.40 8.79 25.60 0.23 -25.17 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.91 16 9 C 0.24 10.26 4.78 85.63 0.41 10.67 16 10 N -0.57 -22.14 2.47 -826.15 -2.04 -24.17 16 11 C 0.15 4.98 5.73 86.38 0.49 5.48 16 12 C -0.18 -5.63 5.98 -10.79 -0.06 -5.69 16 13 C -0.17 -4.75 10.18 30.62 0.31 -4.44 16 14 C -0.16 -3.84 10.25 30.62 0.31 -3.53 16 15 C 0.50 19.76 6.71 87.66 0.59 20.35 16 16 O -0.55 -23.44 15.23 -3.03 -0.05 -23.48 16 17 C 0.03 1.26 3.08 29.85 0.09 1.35 16 18 H 0.17 6.22 5.62 -2.39 -0.01 6.20 16 19 F -0.16 -5.89 17.03 44.97 0.77 -5.12 16 20 C 0.45 16.03 2.86 71.98 0.21 16.24 16 21 F -0.17 -6.05 15.95 44.97 0.72 -5.33 16 22 F -0.16 -5.36 17.30 44.97 0.78 -4.58 16 23 F -0.17 -6.12 17.02 44.97 0.77 -5.35 16 24 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 25 H 0.03 1.38 6.50 -2.38 -0.02 1.36 16 26 H 0.04 1.80 7.86 -2.39 -0.02 1.79 16 27 H 0.08 2.64 7.51 -2.39 -0.02 2.62 16 28 H 0.09 2.86 7.57 -2.39 -0.02 2.84 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.10 2.69 8.03 -2.39 -0.02 2.67 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -52.96 304.73 7.44 -45.52 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.15 Total: 10.43 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 3.04 Total: 17.21 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.75 Total: -70.76 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 9 Polarization: -23.41 SS G_CDS: 3.03 Total: -20.39 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.47 kcal Total: -52.96 7.44 -45.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764501136.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.754 kcal (2) G-P(sol) polarization free energy of solvation -52.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds