Wall clock time and date at job start Tue Mar 31 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38339 * 119.94156 * 2 1 4 4 C 1.38297 * 120.24402 * 179.97438 * 3 2 1 5 5 C 1.38043 * 120.11909 * 359.76129 * 4 3 2 6 6 C 1.39310 * 119.87385 * 0.51406 * 5 4 3 7 7 C 1.48409 * 120.11697 * 179.74571 * 6 5 4 8 8 C 1.39458 * 120.46647 * 179.74747 * 7 6 5 9 9 N 1.31791 * 120.93493 * 179.97438 * 8 7 6 10 10 C 1.31702 * 122.02619 * 0.02562 * 9 8 7 11 11 C 1.39674 * 120.81568 * 359.73132 * 10 9 8 12 12 C 1.47684 * 120.51088 * 180.29348 * 11 10 9 13 13 O 1.21500 * 120.00116 * 180.22788 * 12 11 10 14 14 O 1.34733 * 119.99580 * 0.22459 * 12 11 10 15 15 C 1.34857 * 116.99695 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99780 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99949 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00389 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47508 * 89.99676 * 19 17 15 21 21 H 1.48504 * 109.47470 * 210.00233 * 19 17 15 22 22 H 1.48506 * 109.46823 * 330.00122 * 19 17 15 23 23 C 1.39455 * 120.46755 * 359.72209 * 7 6 5 24 24 C 1.37995 * 119.93859 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47413 * 270.02689 * 1 2 3 26 26 H 1.09010 * 109.47008 * 30.02475 * 1 2 3 27 27 H 1.08995 * 109.47447 * 150.01724 * 1 2 3 28 28 H 1.08000 * 119.87969 * 359.97303 * 3 2 1 29 29 H 1.08001 * 119.94347 * 180.02562 * 4 3 2 30 30 H 1.07996 * 120.06254 * 180.25627 * 5 4 3 31 31 H 1.07999 * 119.53153 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.59320 * 179.97438 * 10 9 8 33 33 H 0.96998 * 120.00452 * 179.97438 * 18 17 15 34 34 H 1.08002 * 120.90808 * 359.97438 * 23 7 6 35 35 H 1.08006 * 120.05987 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0060 6 6 3.5892 -1.1944 0.0002 7 6 4.3352 -2.4773 0.0004 8 6 3.6516 -3.6928 -0.0001 9 7 4.3048 -4.8375 -0.0004 10 6 5.6208 -4.8906 0.0002 11 6 6.3841 -3.7210 -0.0044 12 6 7.8594 -3.7885 -0.0102 13 8 8.5144 -2.7652 -0.0100 14 8 8.4789 -4.9849 -0.0157 15 6 9.8275 -4.9760 -0.0203 16 1 10.3613 -4.0371 -0.0199 17 6 10.5294 -6.1735 -0.0255 18 7 9.8799 -7.3159 -0.0255 19 14 12.3974 -6.1612 -0.0326 20 1 12.8978 -6.1609 1.3655 21 1 12.8977 -7.3689 -0.7372 22 1 12.8817 -4.9439 -0.7319 23 6 5.7298 -2.4843 0.0006 24 6 2.1957 -1.1958 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6546 2.1324 -0.0004 29 1 4.1146 2.1447 0.0010 30 1 5.3594 0.0225 0.0106 31 1 2.5716 -3.6962 -0.0002 32 1 6.1158 -5.8506 0.0003 33 1 10.3704 -8.1527 -0.0295 34 1 6.2892 -1.5604 0.0001 35 1 1.6556 -2.1312 0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768681754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:05 Heat of formation + Delta-G solvation = -44.816921 kcal Electronic energy + Delta-G solvation = -20296.257141 eV Core-core repulsion = 17030.403687 eV Total energy + Delta-G solvation = -3265.853454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82017 -40.77386 -39.80943 -37.39116 -34.94139 -34.40719 -33.42681 -33.14849 -30.41074 -28.07957 -27.66508 -25.77685 -25.03482 -23.48490 -21.94063 -21.51972 -19.98165 -19.11754 -18.39448 -17.46818 -17.14700 -16.93696 -16.74172 -16.19851 -15.96178 -15.61184 -15.14358 -14.75586 -14.67137 -14.50599 -14.40635 -13.77068 -13.69758 -13.38180 -13.27355 -13.04937 -12.94214 -12.47423 -12.25494 -12.18163 -12.09449 -11.91188 -11.42541 -11.29175 -10.78535 -10.68194 -10.62294 -9.67418 -9.17844 -8.61708 -6.39070 -0.67763 -0.31668 0.44747 0.74476 1.32943 1.34926 1.50803 1.70855 2.02433 2.52521 2.57385 2.92473 3.02093 3.25825 3.41168 3.65771 3.70129 3.78771 4.00410 4.11317 4.24254 4.27570 4.45466 4.49716 4.59672 4.78619 4.85526 4.91725 4.96747 5.01110 5.08874 5.15680 5.33143 5.39173 5.53019 5.60375 5.66691 5.73596 6.05641 6.47984 6.70296 6.82069 7.61306 8.58332 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.037670 B = 0.003280 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.128378 B = 8533.727635 C = 9261.686830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.053 4.053 7 C -0.097 4.097 8 C 0.132 3.868 9 N -0.490 5.490 10 C 0.143 3.857 11 C -0.159 4.159 12 C 0.436 3.564 13 O -0.577 6.577 14 O -0.226 6.226 15 C -0.420 4.420 16 H 0.086 0.914 17 C -0.001 4.001 18 N -0.893 5.893 19 Si 1.021 2.979 20 H -0.259 1.259 21 H -0.258 1.258 22 H -0.263 1.263 23 C -0.023 4.023 24 C -0.113 4.113 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.118 0.882 31 H 0.203 0.797 32 H 0.161 0.839 33 H 0.283 0.717 34 H 0.147 0.853 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.584 13.310 0.086 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.152 4.152 6 C -0.054 4.054 7 C -0.099 4.099 8 C -0.025 4.025 9 N -0.198 5.198 10 C -0.014 4.014 11 C -0.162 4.162 12 C 0.285 3.715 13 O -0.476 6.476 14 O -0.133 6.133 15 C -0.496 4.496 16 H 0.103 0.897 17 C -0.202 4.202 18 N -0.529 5.529 19 Si 0.839 3.161 20 H -0.183 1.183 21 H -0.182 1.182 22 H -0.187 1.187 23 C -0.048 4.048 24 C -0.130 4.130 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.219 0.781 32 H 0.178 0.822 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.846 12.503 0.080 22.617 hybrid contribution 1.908 0.572 0.010 1.991 sum -16.939 13.075 0.089 21.398 Atomic orbital electron populations 1.20861 0.88781 1.03994 1.03334 1.20215 0.97754 0.92459 0.98428 1.21488 0.93983 0.98772 0.99344 1.21340 0.94980 0.97945 0.99294 1.21420 1.00325 0.92571 1.00844 1.18560 0.93788 0.90410 1.02613 1.19833 0.91956 0.95497 1.02631 1.23739 1.02116 0.85724 0.90952 1.67807 1.08550 1.30094 1.13361 1.23154 0.89510 0.97927 0.90791 1.20151 0.90170 0.96633 1.09240 1.21302 0.89275 0.82588 0.78308 1.90579 1.67993 1.36460 1.52594 1.83898 1.23263 1.30480 1.75670 1.21546 0.77799 0.95397 1.54820 0.89664 1.26615 1.06405 0.92874 0.94328 1.70046 1.39125 0.98401 1.45285 0.84586 0.72838 0.79036 0.79658 1.18309 1.18167 1.18694 1.21825 0.94247 0.96896 0.91824 1.21326 0.91917 0.99539 1.00234 0.90145 0.90258 0.90538 0.83422 0.83957 0.86391 0.78065 0.82184 0.90785 0.83572 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.09 -1.34 5.87 -19.90 -0.12 -1.45 16 3 C -0.12 -1.78 9.69 22.31 0.22 -1.56 16 4 C -0.12 -2.13 10.03 22.24 0.22 -1.91 16 5 C -0.13 -3.09 9.44 22.48 0.21 -2.88 16 6 C -0.05 -1.25 5.88 -20.04 -0.12 -1.37 16 7 C -0.10 -2.77 5.89 -19.98 -0.12 -2.89 16 8 C 0.13 3.54 10.59 84.99 0.90 4.44 16 9 N -0.49 -16.51 10.33 -193.83 -2.00 -18.51 16 10 C 0.14 5.66 10.78 85.06 0.92 6.58 16 11 C -0.16 -6.79 5.89 -20.03 -0.12 -6.91 16 12 C 0.44 23.41 7.84 70.32 0.55 23.96 16 13 O -0.58 -32.94 15.66 19.84 0.31 -32.62 16 14 O -0.23 -13.55 9.01 11.31 0.10 -13.45 16 15 C -0.42 -25.67 9.65 67.96 0.66 -25.02 16 16 H 0.09 5.26 6.86 -2.91 -0.02 5.24 16 17 C 0.00 -0.03 5.49 84.89 0.47 0.44 16 18 N -0.89 -52.19 13.67 21.63 0.30 -51.89 16 19 Si 1.02 43.05 29.55 68.60 2.03 45.08 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.02 -0.80 9.07 22.97 0.21 -0.60 16 24 C -0.11 -2.02 9.09 22.48 0.20 -1.82 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.53 8.09 -2.38 -0.02 0.51 16 27 H 0.08 0.57 8.08 -2.39 -0.02 0.56 16 28 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 29 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.12 2.86 6.27 -2.91 -0.02 2.84 16 31 H 0.20 3.48 6.21 -2.91 -0.02 3.46 16 32 H 0.16 6.79 7.61 -2.91 -0.02 6.77 16 33 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.15 5.11 5.99 -2.91 -0.02 5.10 16 35 H 0.15 1.91 6.23 -2.91 -0.02 1.89 16 Total: -1.00 -74.00 312.66 6.66 -67.34 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.13 Total: 15.34 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.80 Total: -11.29 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.71 Total: -70.40 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: 0.41 Total: -46.07 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.00 6.66 -67.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768681754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.522 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds