Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47069 * 239.99993 * 3 2 1 5 5 H 1.48501 * 109.47244 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47197 * 119.99877 * 3 2 1 7 7 C 1.39950 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00019 * 197.84723 * 7 2 1 9 9 C 1.41392 * 119.99758 * 17.85013 * 7 2 1 10 10 C 1.40725 * 120.24051 * 204.38350 * 9 7 2 11 11 C 1.37618 * 119.74244 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.24734 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.74471 * 179.97438 * 12 11 10 14 14 O 1.45206 * 109.46975 * 90.00182 * 13 12 11 15 15 C 1.34681 * 117.00091 * 179.97438 * 14 13 12 16 16 O 1.21429 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.48070 * 120.00079 * 180.02562 * 15 14 13 18 18 C 1.39339 * 119.72667 * 179.97438 * 17 15 14 19 19 C 1.38590 * 119.05743 * 180.02562 * 18 17 15 20 20 C 1.38623 * 118.48915 * 0.02562 * 19 18 17 21 21 C 1.38587 * 119.35469 * 0.27163 * 20 19 18 22 22 N 1.31498 * 120.90826 * 359.42113 * 21 20 19 23 23 C 1.38632 * 120.50543 * 0.25398 * 12 11 10 24 24 C 1.37618 * 120.24214 * 359.44662 * 23 12 11 25 25 H 0.96999 * 119.99592 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.12625 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.87319 * 179.97438 * 11 10 9 28 28 H 1.09002 * 109.47791 * 330.00344 * 13 12 11 29 29 H 1.09000 * 109.47538 * 210.00023 * 13 12 11 30 30 H 1.08006 * 120.47288 * 0.04723 * 18 17 15 31 31 H 1.07997 * 120.75924 * 179.97438 * 19 18 17 32 32 H 1.07993 * 120.32404 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.54058 * 179.72762 * 21 20 19 34 34 H 1.07998 * 119.87643 * 179.70492 * 23 12 11 35 35 H 1.08005 * 120.12475 * 180.27684 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3520 -2.4072 -0.3743 10 6 1.8258 -3.6499 0.0856 11 6 1.1797 -4.8068 -0.2860 12 6 0.0666 -4.7511 -1.1105 13 6 -0.6318 -6.0251 -1.5109 14 8 -1.6657 -6.3359 -0.5399 15 6 -2.3892 -7.4517 -0.7531 16 8 -2.1631 -8.1457 -1.7236 17 6 -3.4610 -7.8316 0.1953 18 6 -4.2064 -8.9868 -0.0312 19 6 -5.2066 -9.3290 0.8651 20 6 -5.4272 -8.5034 1.9566 21 6 -4.6514 -7.3661 2.1160 22 7 -3.7047 -7.0679 1.2534 23 6 -0.4055 -3.5329 -1.5742 24 6 0.2211 -2.3629 -1.2104 25 1 -0.4849 0.8401 0.0004 26 1 2.6935 -3.6956 0.7270 27 1 1.5418 -5.7617 0.0653 28 1 0.0910 -6.8403 -1.5456 29 1 -1.0837 -5.8980 -2.4946 30 1 -4.0073 -9.6071 -0.8927 31 1 -5.8013 -10.2181 0.7160 32 1 -6.1986 -8.7421 2.6737 33 1 -4.8237 -6.7185 2.9629 34 1 -1.2706 -3.5017 -2.2199 35 1 -0.1509 -1.4145 -1.5691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = -31.770678 kcal Electronic energy + Delta-G solvation = -20192.493059 eV Core-core repulsion = 16927.205333 eV Total energy + Delta-G solvation = -3265.287727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71597 -39.42552 -37.61732 -36.04646 -33.83772 -32.85331 -31.73298 -30.68652 -29.32218 -27.30963 -25.20624 -23.80048 -23.48577 -21.17797 -21.02823 -20.00729 -18.13039 -17.35160 -17.19632 -16.21411 -16.05255 -15.94982 -15.34845 -14.92514 -14.25254 -14.17925 -13.80571 -13.50909 -13.44350 -12.84859 -12.43119 -12.31316 -12.09275 -11.97604 -11.70169 -11.14333 -10.97242 -10.87431 -10.55448 -10.41388 -10.22974 -10.11947 -9.74780 -9.61318 -9.47121 -9.42077 -9.18294 -7.51547 -7.40614 -6.82610 -4.42544 0.37959 0.98732 2.43612 2.50704 2.94827 3.03663 3.06128 3.07399 3.31145 3.68522 3.88379 4.11738 4.52531 4.54686 4.70741 4.75624 4.84426 5.21123 5.46204 5.64758 5.66673 5.69798 5.75495 5.80693 6.09495 6.29893 6.31213 6.35934 6.75629 6.91470 7.01196 7.22879 7.31064 7.56043 7.56644 7.78572 7.99561 8.05137 8.06860 8.23473 8.57882 8.82407 8.91190 10.11060 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.003231 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.698172 B = 8663.721312 C = 9254.280527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.062 4.062 12 C -0.234 4.234 13 C 0.133 3.867 14 O -0.322 6.322 15 C 0.514 3.486 16 O -0.512 6.512 17 C 0.097 3.903 18 C -0.111 4.111 19 C -0.086 4.086 20 C -0.148 4.148 21 C 0.097 3.903 22 N -0.428 5.428 23 C -0.074 4.074 24 C -0.171 4.171 25 H 0.283 0.717 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.088 0.912 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -12.399 2.354 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.080 4.080 12 C -0.236 4.236 13 C 0.061 3.939 14 O -0.237 6.237 15 C 0.357 3.643 16 O -0.402 6.402 17 C -0.040 4.040 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.168 4.168 21 C -0.063 4.063 22 N -0.139 5.139 23 C -0.093 4.093 24 C -0.190 4.190 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.107 0.893 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.478 -11.641 2.151 15.165 hybrid contribution -0.235 -0.028 -0.066 0.246 sum -9.714 -11.669 2.085 15.325 Atomic orbital electron populations 1.69828 1.07660 1.29583 1.33809 1.25972 0.94756 1.01498 0.92175 0.86329 0.80150 0.79990 0.80066 1.18728 1.20253 1.18907 1.19642 0.98209 0.91254 1.39472 0.90220 1.17676 0.90790 0.92055 0.87837 1.20955 1.04146 0.92671 1.07183 1.20386 0.95096 0.96660 0.95904 1.18648 1.01174 0.91891 1.11868 1.21841 0.86490 0.96159 0.89439 1.86919 1.45225 1.39338 1.52203 1.20851 0.80536 0.79795 0.83141 1.90800 1.67534 1.52782 1.29051 1.20326 0.96211 0.93461 0.93963 1.22134 0.94555 0.96116 1.00354 1.21599 0.96475 0.99648 0.93479 1.22482 1.00302 0.95601 0.98379 1.22989 0.90628 0.95247 0.97479 1.67772 1.15540 1.29406 1.01212 1.20534 0.97554 0.92463 0.98701 1.21280 0.99717 0.96611 1.01372 0.90596 0.88734 0.89316 0.91922 0.91860 0.83268 0.83855 0.84034 0.81693 0.89335 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.16 10.95 55.55 0.61 -19.55 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.03 9.05 -37.74 -0.34 -12.37 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.19 5.57 -106.82 -0.60 2.59 16 10 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 11 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 12 C -0.23 -5.38 5.54 -104.33 -0.58 -5.96 16 13 C 0.13 2.65 5.59 36.00 0.20 2.85 16 14 O -0.32 -6.59 10.02 -40.44 -0.41 -7.00 16 15 C 0.51 9.26 7.95 34.76 0.28 9.53 16 16 O -0.51 -9.52 16.11 -19.21 -0.31 -9.83 16 17 C 0.10 1.47 6.75 -83.03 -0.56 0.91 16 18 C -0.11 -1.26 9.63 -39.04 -0.38 -1.63 16 19 C -0.09 -0.70 10.17 -39.31 -0.40 -1.10 16 20 C -0.15 -1.16 10.12 -39.31 -0.40 -1.55 16 21 C 0.10 1.04 11.18 -17.57 -0.20 0.84 16 22 N -0.43 -6.56 10.12 -9.81 -0.10 -6.66 16 23 C -0.07 -1.78 9.67 -39.66 -0.38 -2.16 16 24 C -0.17 -4.47 8.70 -38.88 -0.34 -4.81 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 26 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 29 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.15 1.52 7.64 -52.48 -0.40 1.12 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -30.65 317.14 -8.65 -39.30 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.65 Total: 4.61 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -4.54 Total: -19.00 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.51 Total: -26.21 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.71 Total: -16.83 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.65 -8.65 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.532 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds