Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34655 * 116.99756 * 2 1 4 4 O 1.21404 * 119.99938 * 359.97438 * 3 2 1 5 5 C 1.48229 * 119.99646 * 179.97438 * 3 2 1 6 6 C 1.42162 * 126.84185 * 179.71041 * 5 3 2 7 7 C 1.36751 * 103.78634 * 179.91242 * 6 5 3 8 8 C 1.47365 * 126.83958 * 180.10733 * 7 6 5 9 9 O 1.21506 * 119.99415 * 0.25704 * 8 7 6 10 10 O 1.34782 * 120.00096 * 180.26048 * 8 7 6 11 11 C 1.45201 * 116.99566 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46457 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46754 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47251 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00239 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00006 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00111 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47076 * 359.97438 * 18 16 14 20 20 H 1.48489 * 109.47152 * 119.99941 * 18 16 14 21 21 H 1.48505 * 109.47035 * 239.99943 * 18 16 14 22 22 O 1.34648 * 106.32429 * 0.34728 * 7 6 5 23 23 N 1.20871 * 111.75100 * 359.76119 * 22 7 6 24 24 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47465 * 300.00024 * 1 2 3 26 26 H 1.08999 * 109.47008 * 60.00033 * 1 2 3 27 27 H 1.07999 * 128.10796 * 0.03447 * 6 5 3 28 28 H 1.08997 * 109.47277 * 299.99205 * 11 10 8 29 29 H 1.08998 * 109.47094 * 60.00248 * 11 10 8 30 30 H 1.09000 * 109.47336 * 299.99552 * 12 11 10 31 31 H 1.08990 * 109.47317 * 60.00136 * 12 11 10 32 32 H 1.09005 * 109.46982 * 299.99916 * 13 12 11 33 33 H 1.08995 * 109.47762 * 59.99632 * 13 12 11 34 34 H 0.97005 * 119.99890 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4020 2.2179 -0.0005 5 6 3.5435 1.2774 0.0006 6 6 4.3352 2.4581 -0.0051 7 6 5.6198 1.9891 0.0002 8 6 6.8542 2.7940 -0.0001 9 8 6.7883 4.0072 -0.0008 10 8 8.0563 2.1843 0.0004 11 6 9.2293 3.0400 0.0006 12 6 10.4914 2.1750 0.0017 13 6 11.7276 3.0766 0.0026 14 6 12.9707 2.2247 0.0031 15 1 12.8874 1.1479 0.0032 16 6 14.2143 2.8200 0.0034 17 7 14.3157 4.1312 0.0027 18 14 15.7552 1.7640 0.0047 19 1 15.3721 0.3293 0.0059 20 1 16.5598 2.0609 -1.2075 21 1 16.5587 2.0623 1.2175 22 8 5.5322 0.6455 0.0004 23 7 4.3827 0.2716 0.0007 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.0006 3.4849 -0.0102 28 1 9.2204 3.6690 -0.8895 29 1 9.2198 3.6693 0.8905 30 1 10.5002 1.5462 0.8921 31 1 10.5012 1.5454 -0.8879 32 1 11.7190 3.7057 -0.8875 33 1 11.7177 3.7060 0.8924 34 1 15.1907 4.5500 0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781277902.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -127.252192 kcal Electronic energy + Delta-G solvation = -20604.290691 eV Core-core repulsion = 16891.720561 eV Total energy + Delta-G solvation = -3712.570130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.62763 -41.64287 -41.57845 -38.12310 -37.86529 -35.95523 -35.57900 -33.93512 -33.42954 -29.26330 -29.10406 -26.60867 -26.08977 -24.74509 -23.76961 -22.15584 -21.83910 -20.16518 -19.43777 -18.75793 -18.71102 -18.06113 -17.83562 -17.75413 -17.51570 -16.94382 -16.47170 -15.66470 -15.26400 -14.95844 -14.85275 -14.54618 -14.15614 -13.91526 -13.83155 -13.40679 -13.12393 -12.85522 -12.50314 -12.43793 -12.27152 -12.17345 -12.13229 -12.09638 -12.00316 -11.50456 -11.44407 -11.29464 -11.20608 -10.54509 -8.19302 -6.29649 -0.84545 -0.32817 0.79787 1.01130 1.26763 1.43416 1.44302 1.45141 1.57193 1.74539 2.42645 2.45109 3.15159 3.16114 3.39160 3.49886 3.74802 4.03127 4.05497 4.18738 4.28380 4.38749 4.45396 4.66368 4.78076 4.85194 4.93078 5.07985 5.22441 5.53768 5.69613 5.84770 6.07425 6.21620 6.27534 6.48120 6.86851 7.39725 8.92760 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.055034 B = 0.002317 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.655166 B =12081.773769 C =12559.378577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.559 3.441 4 O -0.496 6.496 5 C -0.028 4.028 6 C -0.072 4.072 7 C -0.057 4.057 8 C 0.560 3.440 9 O -0.491 6.491 10 O -0.340 6.340 11 C 0.077 3.923 12 C -0.097 4.097 13 C 0.025 3.975 14 C -0.540 4.540 15 H 0.064 0.936 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.280 1.280 22 O 0.175 5.825 23 N -0.287 5.287 24 H 0.137 0.863 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.221 0.779 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.626 -7.748 -0.016 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.401 3.599 4 O -0.383 6.383 5 C -0.183 4.183 6 C -0.093 4.093 7 C -0.120 4.120 8 C 0.402 3.598 9 O -0.379 6.379 10 O -0.255 6.255 11 C 0.004 3.996 12 C -0.135 4.135 13 C -0.013 4.013 14 C -0.578 4.578 15 H 0.083 0.917 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.206 1.206 22 O 0.082 5.918 23 N 0.023 4.977 24 H 0.155 0.845 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.237 0.763 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.053 -8.277 -0.017 28.291 hybrid contribution 0.806 0.852 0.001 1.172 sum -26.247 -7.425 -0.016 27.277 Atomic orbital electron populations 1.23805 0.72506 1.06606 1.03591 1.86601 1.26505 1.30361 1.82995 1.19252 0.85272 0.82494 0.72887 1.90899 1.65248 1.36486 1.45637 1.22354 0.93868 0.90399 1.11674 1.23054 0.87783 1.01914 0.96532 1.22655 0.94203 0.83371 1.11774 1.19022 0.82536 0.84845 0.73383 1.90971 1.87266 1.13708 1.45939 1.86607 1.14407 1.41864 1.82638 1.23416 0.80395 0.92565 1.03204 1.21498 0.90661 0.98445 1.02897 1.18950 0.91793 0.94722 0.95799 1.21669 0.91880 0.93844 1.50441 0.91732 1.25967 1.02901 0.96249 0.94807 1.70096 1.25019 1.10478 1.51676 0.85385 0.78700 0.79243 0.77636 1.18450 1.20554 1.20563 1.85142 1.21665 1.21088 1.63902 1.74302 0.89598 1.23243 1.10590 0.84487 0.90819 0.90811 0.76272 0.90480 0.90489 0.91285 0.91280 0.98126 0.98119 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -5.83 10.57 -55.63 -0.59 -6.42 16 3 C 0.56 10.83 7.99 70.48 0.56 11.39 16 4 O -0.50 -10.90 16.73 20.15 0.34 -10.56 16 5 C -0.03 -0.56 7.22 42.90 0.31 -0.25 16 6 C -0.07 -1.29 10.77 22.90 0.25 -1.04 16 7 C -0.06 -1.19 7.36 24.33 0.18 -1.01 16 8 C 0.56 14.42 7.96 70.22 0.56 14.98 16 9 O -0.49 -14.48 16.70 19.81 0.33 -14.15 16 10 O -0.34 -9.73 10.23 -56.17 -0.57 -10.31 16 11 C 0.08 2.49 5.48 71.98 0.39 2.88 16 12 C -0.10 -3.72 5.53 30.60 0.17 -3.55 16 13 C 0.02 1.22 4.97 29.85 0.15 1.37 16 14 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 18 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 O 0.17 3.72 11.21 65.78 0.74 4.45 16 23 N -0.29 -6.13 12.09 -48.98 -0.59 -6.72 16 24 H 0.14 0.37 8.14 -2.38 -0.02 0.35 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.22 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 33 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -65.75 321.46 7.55 -58.19 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.13 Total: -1.79 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.46 Total: -2.82 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.31 Total: -61.92 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: 0.24 Total: -36.99 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -65.75 7.55 -58.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781277902.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.058 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds