Wall clock time and date at job start Tue Mar 31 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46941 * 127.21343 * 3 2 1 5 5 C 1.36915 * 120.00389 * 97.07387 * 4 3 2 6 6 H 1.07994 * 120.00306 * 159.21795 * 5 4 3 7 7 C 1.39020 * 119.99615 * 339.22559 * 5 4 3 8 8 N 1.31387 * 120.00177 * 349.27223 * 7 5 4 9 9 Si 1.86807 * 120.00037 * 169.27111 * 7 5 4 10 10 H 1.48503 * 109.47013 * 59.99996 * 9 7 5 11 11 H 1.48500 * 109.46830 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46846 * 299.99907 * 9 7 5 13 13 C 1.34779 * 120.00239 * 277.07439 * 4 3 2 14 14 O 1.21612 * 120.00036 * 184.20982 * 13 4 3 15 15 C 1.47608 * 120.00033 * 4.21455 * 13 4 3 16 16 C 1.41540 * 126.52752 * 185.35921 * 15 13 4 17 17 C 1.35345 * 105.50205 * 179.97438 * 16 15 13 18 18 N 1.35045 * 107.24384 * 0.25957 * 17 16 15 19 19 C 1.46503 * 124.87866 * 179.70310 * 18 17 16 20 20 C 1.53000 * 109.47073 * 125.00018 * 19 18 17 21 21 F 1.39903 * 109.47241 * 174.99843 * 20 19 18 22 22 F 1.39900 * 109.47232 * 295.00092 * 20 19 18 23 23 N 1.28465 * 110.24069 * 359.55076 * 18 17 16 24 24 H 4.40637 * 5.51388 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47397 * 7.21352 * 3 2 1 26 26 H 1.08997 * 109.47009 * 247.20980 * 3 2 1 27 27 H 0.96998 * 119.99681 * 179.97438 * 8 7 5 28 28 H 1.08001 * 127.24717 * 359.93280 * 16 15 13 29 29 H 1.08000 * 126.37858 * 179.97438 * 17 16 15 30 30 H 1.08998 * 109.47022 * 244.99506 * 19 18 17 31 31 H 1.08992 * 109.47602 * 5.00114 * 19 18 17 32 32 H 1.09006 * 109.47461 * 55.00085 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8362 -1.0999 5 6 3.4991 2.1344 -0.8636 6 1 4.1553 2.6448 -1.5530 7 6 3.0255 2.7954 0.2639 8 7 2.0693 2.2581 0.9872 9 14 3.7484 4.4478 0.7505 10 1 3.5408 5.4225 -0.3506 11 1 3.0766 4.9390 1.9804 12 1 5.2028 4.2950 1.0087 13 6 3.2232 0.3270 -2.3447 14 8 3.6996 0.9952 -3.2422 15 6 2.7427 -1.0415 -2.6185 16 6 2.8644 -1.7488 -3.8385 17 6 2.2846 -2.9518 -3.6185 18 7 1.8397 -2.9547 -2.3435 19 6 1.1420 -4.0720 -1.7021 20 6 1.8773 -4.4630 -0.4186 21 9 1.1502 -5.4519 0.2526 22 9 3.1470 -4.9549 -0.7399 23 7 2.1189 -1.8381 -1.7728 24 1 -1.0502 0.0000 0.0004 25 1 3.0098 -1.0187 -0.1290 26 1 3.0091 0.3989 0.9474 27 1 1.7391 2.7192 1.7741 28 1 3.3227 -1.4013 -4.7526 29 1 2.1908 -3.7576 -4.3315 30 1 0.1224 -3.7725 -1.4598 31 1 1.1188 -4.9240 -2.3814 32 1 1.9785 -3.5878 0.2233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798803768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:03 Heat of formation + Delta-G solvation = 28.735829 kcal Electronic energy + Delta-G solvation = -22331.189570 eV Core-core repulsion = 18546.588823 eV Total energy + Delta-G solvation = -3784.600746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.19876 -47.19950 -42.22414 -38.30597 -35.14288 -33.93492 -32.07932 -31.13021 -30.28617 -28.97138 -26.38934 -25.24783 -23.75482 -21.83705 -21.06914 -19.14805 -17.95072 -17.74739 -17.71726 -17.10838 -16.69154 -16.17100 -15.91095 -15.00701 -14.62772 -14.13481 -14.03062 -13.86738 -13.73738 -13.55546 -13.04278 -12.88836 -12.64261 -12.46651 -12.25807 -12.13926 -11.46976 -11.33016 -11.00035 -10.56318 -10.37568 -10.14279 -9.36549 -9.23590 -8.91261 -8.70789 -8.66251 -8.50284 -7.82877 -6.33070 -3.90497 2.07757 2.45698 2.63874 3.22680 3.24276 3.27611 3.38560 3.88941 4.02789 4.15284 4.16192 4.26809 4.45586 4.50701 4.76049 4.91681 4.99205 5.11833 5.13135 5.41821 5.68151 5.83968 6.11054 6.20527 6.52727 6.87985 6.93089 7.04407 7.19253 7.51869 8.04572 8.28029 8.47862 9.00556 9.10179 9.32390 9.90559 10.65274 Molecular weight = 283.09amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.005681 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.411731 B = 4927.167555 C = 5644.118066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.074 4.074 3 C 0.232 3.768 4 N -0.419 5.419 5 C -0.307 4.307 6 H 0.106 0.894 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.519 3.481 14 O -0.579 6.579 15 C 0.029 3.971 16 C -0.185 4.185 17 C -0.021 4.021 18 N -0.306 5.306 19 C 0.084 3.916 20 C 0.253 3.747 21 F -0.198 7.198 22 F -0.198 7.198 23 N -0.266 5.266 24 H 0.193 0.807 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.271 0.729 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -13.949 -1.471 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.075 4.075 3 C 0.109 3.891 4 N -0.136 5.136 5 C -0.435 4.435 6 H 0.124 0.876 7 C -0.174 4.174 8 N -0.502 5.502 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.306 3.694 14 O -0.462 6.462 15 C -0.133 4.133 16 C -0.213 4.213 17 C -0.162 4.162 18 N -0.093 5.093 19 C -0.039 4.039 20 C 0.198 3.802 21 F -0.179 7.179 22 F -0.180 7.180 23 N -0.099 5.099 24 H 0.210 0.790 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.176 0.824 29 H 0.192 0.808 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.397 -13.748 -0.564 14.173 hybrid contribution 0.042 0.609 -0.449 0.758 sum -3.354 -13.139 -1.012 13.598 Atomic orbital electron populations 1.24059 0.95188 1.07128 1.04474 1.22887 0.93940 0.94241 0.96468 1.18506 0.84626 0.92905 0.93051 1.43553 1.53740 1.11337 1.04964 1.19725 1.27371 0.87503 1.08949 0.87633 1.25422 0.95232 0.99801 0.96952 1.70000 1.23996 1.39101 1.17107 0.85913 0.79025 0.81337 0.77943 1.19732 1.20921 1.19738 1.16779 0.85505 0.83957 0.83141 1.90621 1.50608 1.60528 1.44447 1.22561 1.02194 0.96398 0.92134 1.21752 1.06337 0.93344 0.99912 1.22697 1.04435 1.01063 0.88033 1.45130 1.43297 1.11487 1.09412 1.22722 0.97500 0.88633 0.95052 1.22159 0.75775 0.88415 0.93844 1.93005 1.77826 1.65508 1.81555 1.93022 1.41539 1.89647 1.93745 1.73984 1.17751 0.93310 1.24894 0.79006 0.91141 0.86963 0.91874 0.82405 0.80796 0.86157 0.86210 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.21 19.25 29.55 0.57 -5.64 16 2 C -0.07 -1.70 9.87 -37.12 -0.37 -2.07 16 3 C 0.23 5.42 4.75 -6.83 -0.03 5.39 16 4 N -0.42 -11.02 2.60 -119.10 -0.31 -11.33 16 5 C -0.31 -8.50 9.35 -14.99 -0.14 -8.64 16 6 H 0.11 3.02 7.34 -52.49 -0.39 2.63 16 7 C 0.03 0.79 5.11 -17.45 -0.09 0.70 16 8 N -0.86 -22.53 9.07 55.50 0.50 -22.03 16 9 Si 0.93 20.41 29.57 -169.99 -5.03 15.39 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.52 13.46 7.56 -12.44 -0.09 13.36 16 14 O -0.58 -16.53 16.59 5.27 0.09 -16.44 16 15 C 0.03 0.62 6.70 -82.77 -0.55 0.06 16 16 C -0.19 -3.24 10.81 -39.36 -0.43 -3.66 16 17 C -0.02 -0.28 11.40 -17.17 -0.20 -0.48 16 18 N -0.31 -4.36 3.39 -61.33 -0.21 -4.57 16 19 C 0.08 0.81 6.59 -4.04 -0.03 0.79 16 20 C 0.25 2.75 5.37 37.16 0.20 2.95 16 21 F -0.20 -2.12 17.34 2.25 0.04 -2.08 16 22 F -0.20 -2.57 17.32 2.25 0.04 -2.53 16 23 N -0.27 -4.94 7.08 33.41 0.24 -4.70 16 24 H 0.19 3.43 7.80 -54.08 -0.42 3.01 16 25 H 0.07 1.50 5.98 -51.93 -0.31 1.19 16 26 H 0.11 2.74 6.25 -51.93 -0.32 2.41 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.16 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.12 0.77 8.04 -51.93 -0.42 0.35 16 32 H 0.13 1.48 7.96 -51.93 -0.41 1.07 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -32.93 296.96 -3.99 -36.93 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -2.68 Total: 4.13 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.16 Total: 2.76 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.22 Total: -42.63 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.09 Total: -16.44 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.93 -3.99 -36.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.664 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds