Wall clock time and date at job start Tue Mar 31 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48493 * 109.47336 * 269.99953 * 3 2 1 5 5 H 1.48500 * 109.46864 * 30.00284 * 3 2 1 6 6 H 1.48501 * 109.47043 * 149.99815 * 3 2 1 7 7 C 1.40248 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 197.86747 * 7 2 1 9 9 C 1.41095 * 119.99881 * 17.86775 * 7 2 1 10 10 C 1.40897 * 120.09370 * 204.64347 * 9 7 2 11 11 C 1.36303 * 119.89539 * 180.02562 * 10 9 7 12 12 C 1.40071 * 120.10039 * 359.97438 * 11 10 9 13 13 C 1.47506 * 119.90138 * 179.97438 * 12 11 10 14 14 O 1.21505 * 119.99680 * 0.02562 * 13 12 11 15 15 O 1.34771 * 119.99947 * 180.27674 * 13 12 11 16 16 C 1.45205 * 116.99966 * 179.72608 * 15 13 12 17 17 C 1.50704 * 109.47141 * 180.02562 * 16 15 13 18 18 C 1.38649 * 120.79053 * 269.72325 * 17 16 15 19 19 C 1.38207 * 119.16094 * 179.80200 * 18 17 16 20 20 N 1.31872 * 120.76320 * 0.47961 * 19 18 17 21 21 C 1.31872 * 121.72633 * 359.74440 * 20 19 18 22 22 C 1.38204 * 120.76521 * 0.02562 * 21 20 19 23 23 C 1.40066 * 120.19843 * 0.27886 * 12 11 10 24 24 C 1.36308 * 120.09994 * 359.44043 * 23 12 11 25 25 H 0.97000 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.05852 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.95103 * 179.97438 * 11 10 9 28 28 H 1.08999 * 109.46682 * 300.00033 * 16 15 13 29 29 H 1.08994 * 109.47243 * 60.00214 * 16 15 13 30 30 H 1.08004 * 120.41468 * 359.97438 * 18 17 16 31 31 H 1.08003 * 119.61692 * 180.20593 * 19 18 17 32 32 H 1.08000 * 119.61342 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.41744 * 180.02562 * 22 21 20 34 34 H 1.08002 * 119.95305 * 179.72481 * 23 12 11 35 35 H 1.08005 * 120.04870 * 180.27027 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4378 2.6526 0.7001 6 1 3.5379 1.4402 0.7001 7 6 2.0075 -1.2146 -0.0005 8 1 3.0485 -1.2372 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8268 -3.6495 0.0895 11 6 1.1917 -4.7988 -0.2762 12 6 0.0697 -4.7457 -1.1129 13 6 -0.6138 -5.9923 -1.5063 14 8 -0.2036 -7.0630 -1.1042 15 8 -1.6903 -5.9440 -2.3158 16 6 -2.3088 -7.2100 -2.6664 17 6 -3.4877 -6.9597 -3.5712 18 6 -4.7559 -6.7631 -3.0465 19 6 -5.8124 -6.5320 -3.9071 20 7 -5.6260 -6.5070 -5.2124 21 6 -4.4350 -6.6943 -5.7466 22 6 -3.3308 -6.9262 -4.9485 23 6 -0.4015 -3.5131 -1.5823 24 6 0.2238 -2.3582 -1.2171 25 1 -0.4850 0.8400 -0.0004 26 1 2.6921 -3.6915 0.7343 27 1 1.5543 -5.7518 0.0798 28 1 -1.5826 -7.8386 -3.1819 29 1 -2.6462 -7.7129 -1.7602 30 1 -4.9156 -6.7873 -1.9786 31 1 -6.8028 -6.3746 -3.5062 32 1 -4.3214 -6.6671 -6.8202 33 1 -2.3579 -7.0785 -5.3919 34 1 -1.2644 -3.4771 -2.2308 35 1 -0.1428 -1.4079 -1.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803410048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:13 Heat of formation + Delta-G solvation = -41.123641 kcal Electronic energy + Delta-G solvation = -20228.631024 eV Core-core repulsion = 16962.937723 eV Total energy + Delta-G solvation = -3265.693301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36272 -39.50839 -37.51539 -35.84778 -34.00103 -33.29689 -31.35286 -30.41052 -29.55680 -27.51303 -25.93271 -23.60584 -22.72251 -21.83934 -21.00591 -20.02127 -17.61166 -17.17019 -16.93648 -16.69568 -15.96465 -15.67757 -15.38043 -15.35358 -14.10872 -13.99286 -13.82528 -13.54341 -13.36178 -12.86232 -12.81466 -12.30887 -12.14952 -11.88239 -11.74815 -11.46270 -11.35365 -11.03435 -10.75593 -10.29225 -10.19692 -9.98529 -9.65547 -9.64062 -9.46993 -9.40270 -9.28684 -7.80867 -7.69401 -7.14273 -4.72690 0.97031 1.00139 1.99180 2.83632 2.90199 2.93109 2.98414 3.27497 3.56962 3.67022 3.83445 4.31833 4.41181 4.52581 4.59028 4.93681 4.98485 5.26640 5.34678 5.46763 5.49064 5.64648 5.79522 5.92847 6.15776 6.18459 6.21004 6.53464 6.69643 6.75084 6.93093 6.94568 7.04621 7.36413 7.61578 7.73072 7.78582 7.80571 7.95621 8.30510 8.51555 8.64144 8.65617 9.76859 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.003446 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.720532 B = 8123.929538 C = 9047.058980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.276 4.276 13 C 0.515 3.485 14 O -0.552 6.552 15 O -0.354 6.354 16 C 0.106 3.894 17 C -0.043 4.043 18 C -0.150 4.150 19 C 0.095 3.905 20 N -0.484 5.484 21 C 0.095 3.905 22 C -0.150 4.150 23 C -0.042 4.042 24 C -0.185 4.185 25 H 0.289 0.711 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -6.060 -6.171 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.279 4.279 13 C 0.368 3.632 14 O -0.446 6.446 15 O -0.272 6.272 16 C 0.031 3.969 17 C -0.051 4.051 18 C -0.170 4.170 19 C -0.061 4.061 20 N -0.193 5.193 21 C -0.062 4.062 22 C -0.170 4.170 23 C -0.061 4.061 24 C -0.204 4.204 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.155 0.845 34 H 0.119 0.881 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.264 -6.069 -6.592 11.534 hybrid contribution 0.983 0.442 0.660 1.263 sum -6.281 -5.627 -5.932 10.310 Atomic orbital electron populations 1.69736 1.08022 1.30434 1.30268 1.26171 0.94858 1.02129 0.91856 0.86154 0.80556 0.79512 0.79797 1.18778 1.19873 1.18159 1.19958 0.98510 0.91177 1.36363 0.89396 1.17852 0.90288 0.92202 0.86853 1.20688 1.04707 0.92427 1.08032 1.20346 0.92461 0.97422 0.93322 1.18187 1.04527 0.89129 1.16024 1.21621 0.76805 0.90315 0.74479 1.90701 1.65939 1.32083 1.55875 1.86672 1.43731 1.33436 1.63340 1.21586 0.92030 0.85543 0.97721 1.20048 0.94283 0.96759 0.94031 1.22144 0.93063 0.99893 1.01853 1.22768 0.99207 0.95463 0.88710 1.67663 1.25303 1.12230 1.14120 1.22763 0.87651 0.95245 1.00528 1.22135 1.00895 1.00326 0.93633 1.20640 0.97091 0.91941 0.96439 1.21015 1.00046 0.97069 1.02247 0.89923 0.88008 0.87921 0.90413 0.90400 0.84438 0.82500 0.82519 0.84461 0.88128 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.91 10.95 55.56 0.61 -17.30 16 2 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 3 Si 0.92 16.75 29.60 -169.99 -5.03 11.72 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.43 -10.47 9.04 -37.74 -0.34 -10.81 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.29 5.58 -106.80 -0.60 2.69 16 10 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16 11 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 12 C -0.28 -6.41 5.89 -104.75 -0.62 -7.03 16 13 C 0.52 11.16 7.89 34.51 0.27 11.43 16 14 O -0.55 -12.58 16.11 -19.27 -0.31 -12.89 16 15 O -0.35 -6.68 9.43 -40.69 -0.38 -7.06 16 16 C 0.11 1.55 5.65 36.01 0.20 1.75 16 17 C -0.04 -0.55 5.56 -104.32 -0.58 -1.13 16 18 C -0.15 -1.74 9.82 -39.44 -0.39 -2.13 16 19 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 20 N -0.48 -6.00 10.36 -13.25 -0.14 -6.13 16 21 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 22 C -0.15 -1.73 9.82 -39.44 -0.39 -2.11 16 23 C -0.04 -0.98 9.55 -39.59 -0.38 -1.36 16 24 C -0.18 -4.54 8.63 -39.27 -0.34 -4.88 16 25 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.65 16 29 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 35 H 0.12 3.03 6.15 -52.48 -0.32 2.70 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -28.30 316.01 -8.51 -36.81 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.63 Total: 7.18 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -4.39 Total: -17.09 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.47 Total: -23.43 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.69 Total: -19.96 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.30 -8.51 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803410048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.313 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds