Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47365 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47249 * 30.00398 * 3 2 1 6 6 H 1.48498 * 109.47180 * 150.00501 * 3 2 1 7 7 C 1.37880 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99604 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47081 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47116 * 180.02562 * 12 11 10 14 14 O 1.20824 * 120.00104 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99717 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99614 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47075 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 C 1.33641 * 126.03870 * 89.71532 * 18 17 16 20 20 N 1.31777 * 114.50412 * 179.79434 * 19 18 17 21 21 C 1.29029 * 117.12005 * 0.51449 * 20 19 18 22 22 S 1.70976 * 110.16956 * 359.72268 * 21 20 19 23 23 H 0.96999 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47407 * 59.99546 * 9 7 2 25 25 H 1.09003 * 109.47349 * 299.99313 * 9 7 2 26 26 H 1.09000 * 109.47151 * 59.99764 * 10 9 7 27 27 H 1.09003 * 109.46860 * 299.99987 * 10 9 7 28 28 H 1.09000 * 109.47007 * 60.00060 * 11 10 9 29 29 H 1.09003 * 109.47577 * 299.99932 * 11 10 9 30 30 H 1.09000 * 109.47151 * 60.00148 * 12 11 10 31 31 H 1.09003 * 109.47028 * 299.99604 * 12 11 10 32 32 H 1.09002 * 109.47177 * 299.99820 * 16 15 13 33 33 H 1.09001 * 109.47399 * 59.99991 * 16 15 13 34 34 H 1.09002 * 109.47153 * 300.00058 * 17 16 15 35 35 H 1.08998 * 109.47533 * 59.99688 * 17 16 15 36 36 H 1.08004 * 122.74324 * 359.97438 * 19 18 17 37 37 H 1.08004 * 124.91473 * 179.68068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 6 6.0616 -4.0789 -0.0015 13 6 7.5687 -4.0789 -0.0020 14 8 8.1728 -3.0325 -0.0034 15 8 8.2398 -5.2414 -0.0020 16 6 9.6898 -5.1653 -0.0032 17 6 10.2747 -6.5791 -0.0024 18 6 11.7796 -6.5002 -0.0042 19 6 12.5657 -6.4526 1.0755 20 7 13.8551 -6.3909 0.8104 21 6 14.1998 -6.3736 -0.4328 22 16 12.8131 -6.4468 -1.4302 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6802 0.8888 25 1 3.8746 -0.6800 -0.8912 26 1 3.6579 -3.1505 -0.8907 27 1 3.6586 -3.1501 0.8893 28 1 5.9156 -2.1222 0.8873 29 1 5.9142 -2.1229 -0.8927 30 1 5.6976 -4.5935 -0.8907 31 1 5.6991 -4.5920 0.8893 32 1 10.0251 -4.6335 -0.8937 33 1 10.0265 -4.6327 0.8863 34 1 9.9394 -7.1104 0.8883 35 1 9.9381 -7.1121 -0.8916 36 1 12.1763 -6.4665 2.0827 37 1 15.2172 -6.3199 -0.7915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811118284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -68.215415 kcal Electronic energy + Delta-G solvation = -18372.869726 eV Core-core repulsion = 15241.445588 eV Total energy + Delta-G solvation = -3131.424138 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60528 -40.07874 -37.04817 -35.13923 -34.11712 -32.64443 -30.43567 -29.14725 -26.53301 -25.59515 -23.42231 -22.34799 -20.67402 -20.44036 -20.10607 -18.55962 -17.63975 -16.96086 -16.61147 -16.36562 -15.99754 -15.16581 -14.87083 -14.45889 -14.23040 -14.09341 -13.67732 -13.40483 -12.83445 -12.71789 -12.33310 -12.31884 -12.12451 -11.78648 -11.65532 -11.18428 -10.82200 -10.81201 -10.60197 -10.56140 -10.14318 -9.89902 -9.79029 -9.69894 -9.56077 -9.44708 -9.15484 -8.51476 -6.02439 -4.00219 0.15742 0.82896 1.23418 2.17930 2.28164 2.55486 3.33422 3.40722 3.45903 3.86281 4.31281 4.39423 4.46108 4.47924 4.75628 4.78462 4.88760 5.02203 5.13693 5.16877 5.32120 5.36519 5.40387 5.63768 5.64677 5.92354 6.02335 6.26469 6.32352 6.58990 6.73085 6.93287 7.18898 7.33438 7.46169 7.69592 7.82182 8.55834 9.02461 9.60586 11.10951 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.048426 B = 0.002109 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.059366 B =13272.899634 C =13511.088695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.111 4.111 13 C 0.461 3.539 14 O -0.505 6.505 15 O -0.361 6.361 16 C 0.070 3.930 17 C -0.040 4.040 18 C -0.220 4.220 19 C 0.040 3.960 20 N -0.471 5.471 21 C 0.018 3.982 22 S 0.131 5.869 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.178 0.822 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.182 -16.730 -1.890 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.149 4.149 13 C 0.305 3.695 14 O -0.392 6.392 15 O -0.278 6.278 16 C -0.005 4.005 17 C -0.080 4.080 18 C -0.341 4.341 19 C -0.111 4.111 20 N -0.184 5.184 21 C -0.279 4.279 22 S 0.383 5.617 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.195 0.805 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 27.571 -16.290 -2.562 32.126 hybrid contribution 0.320 1.005 0.813 1.331 sum 27.892 -15.285 -1.749 31.853 Atomic orbital electron populations 1.69920 1.06293 1.26849 1.51332 1.25050 0.94749 0.99233 0.94610 0.86771 0.80401 0.83567 0.78525 1.20319 1.21437 1.18944 1.21167 0.89585 0.94426 1.50642 0.91037 1.19579 0.97015 0.92324 0.96365 1.21475 0.91043 1.00169 1.01299 1.21614 0.97836 0.92298 1.03191 1.21596 0.85454 1.02026 1.05799 1.24219 0.92226 0.81168 0.71936 1.90678 1.70588 1.32986 1.44971 1.86486 1.21059 1.35761 1.84522 1.22963 0.77287 0.97016 1.03230 1.19873 0.86139 0.96472 1.05538 1.25750 1.00522 1.12443 0.95415 1.21871 0.86959 1.01901 1.00373 1.66354 1.17703 1.15153 1.19196 1.28461 1.04191 1.03970 0.91293 1.84191 0.99333 1.66827 1.11302 0.92790 0.96580 0.97018 0.92569 0.92530 0.91531 0.91536 0.87636 0.87628 0.91069 0.90798 0.88188 0.89093 0.80476 0.78293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.11 -1.35 5.81 -27.88 -0.16 -1.51 16 13 C 0.46 6.07 7.96 36.01 0.29 6.35 16 14 O -0.51 -8.25 15.73 -18.75 -0.29 -8.54 16 15 O -0.36 -3.97 10.22 -39.26 -0.40 -4.37 16 16 C 0.07 0.64 5.45 37.16 0.20 0.84 16 17 C -0.04 -0.26 6.13 -27.89 -0.17 -0.43 16 18 C -0.22 -1.56 5.85 -35.92 -0.21 -1.77 16 19 C 0.04 0.32 11.25 -19.19 -0.22 0.10 16 20 N -0.47 -4.20 10.54 -15.75 -0.17 -4.36 16 21 C 0.02 0.12 12.23 51.59 0.63 0.75 16 22 S 0.13 0.80 23.22 -107.50 -2.50 -1.70 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.20 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -34.10 333.90 -8.08 -42.18 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -5.42 Total: -4.75 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.44 Total: -13.58 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.61 Total: -31.72 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.70 Total: -12.91 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.50 Total: -1.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.10 -8.08 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811118284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.034 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds