Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47365 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47249 * 30.00398 * 3 2 1 6 6 H 1.48498 * 109.47180 * 150.00501 * 3 2 1 7 7 C 1.37880 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99897 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99604 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47081 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47116 * 180.02562 * 12 11 10 14 14 O 1.20824 * 120.00104 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99717 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99614 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47075 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 C 1.33641 * 126.03870 * 89.71532 * 18 17 16 20 20 N 1.31777 * 114.50412 * 179.79434 * 19 18 17 21 21 C 1.29029 * 117.12005 * 0.51449 * 20 19 18 22 22 S 1.70976 * 110.16956 * 359.72268 * 21 20 19 23 23 H 0.96999 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47407 * 59.99546 * 9 7 2 25 25 H 1.09003 * 109.47349 * 299.99313 * 9 7 2 26 26 H 1.09000 * 109.47151 * 59.99764 * 10 9 7 27 27 H 1.09003 * 109.46860 * 299.99987 * 10 9 7 28 28 H 1.09000 * 109.47007 * 60.00060 * 11 10 9 29 29 H 1.09003 * 109.47577 * 299.99932 * 11 10 9 30 30 H 1.09000 * 109.47151 * 60.00148 * 12 11 10 31 31 H 1.09003 * 109.47028 * 299.99604 * 12 11 10 32 32 H 1.09002 * 109.47177 * 299.99820 * 16 15 13 33 33 H 1.09001 * 109.47399 * 59.99991 * 16 15 13 34 34 H 1.09002 * 109.47153 * 300.00058 * 17 16 15 35 35 H 1.08998 * 109.47533 * 59.99688 * 17 16 15 36 36 H 1.08004 * 122.74324 * 359.97438 * 19 18 17 37 37 H 1.08004 * 124.91473 * 179.68068 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0022 12 6 6.0616 -4.0789 -0.0015 13 6 7.5687 -4.0789 -0.0020 14 8 8.1728 -3.0325 -0.0034 15 8 8.2398 -5.2414 -0.0020 16 6 9.6898 -5.1653 -0.0032 17 6 10.2747 -6.5791 -0.0024 18 6 11.7796 -6.5002 -0.0042 19 6 12.5657 -6.4526 1.0755 20 7 13.8551 -6.3909 0.8104 21 6 14.1998 -6.3736 -0.4328 22 16 12.8131 -6.4468 -1.4302 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6802 0.8888 25 1 3.8746 -0.6800 -0.8912 26 1 3.6579 -3.1505 -0.8907 27 1 3.6586 -3.1501 0.8893 28 1 5.9156 -2.1222 0.8873 29 1 5.9142 -2.1229 -0.8927 30 1 5.6976 -4.5935 -0.8907 31 1 5.6991 -4.5920 0.8893 32 1 10.0251 -4.6335 -0.8937 33 1 10.0265 -4.6327 0.8863 34 1 9.9394 -7.1104 0.8883 35 1 9.9381 -7.1121 -0.8916 36 1 12.1763 -6.4665 2.0827 37 1 15.2172 -6.3199 -0.7915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811118284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -88.621414 kcal Electronic energy + Delta-G solvation = -18373.754596 eV Core-core repulsion = 15241.445588 eV Total energy + Delta-G solvation = -3132.309008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57211 -40.63142 -38.02213 -36.66063 -34.78114 -34.58504 -32.04367 -29.84077 -27.95127 -26.38745 -24.45514 -23.50383 -21.93393 -21.50722 -21.03566 -19.13199 -18.88047 -18.50567 -17.86152 -17.31574 -16.61416 -16.30326 -16.22811 -15.48628 -15.21862 -14.85291 -14.83105 -14.44047 -14.15099 -13.94943 -13.70399 -13.55887 -13.20775 -12.91194 -12.85991 -12.35596 -12.24283 -12.11732 -11.75754 -11.71587 -11.58629 -11.37607 -11.31812 -11.23246 -10.75038 -10.66872 -10.30608 -9.95710 -8.28593 -6.31678 -0.34585 0.35507 0.73942 1.17366 1.35711 1.37354 1.49707 1.56997 1.85665 2.36630 3.06841 3.41054 3.62648 3.80597 3.83628 3.92310 4.07279 4.11100 4.24291 4.35080 4.38175 4.54884 4.62296 4.76243 4.80461 4.84284 4.87262 5.10902 5.14017 5.18642 5.22695 5.40219 5.60823 5.65966 5.69494 6.30578 6.68394 6.71484 6.76811 7.33033 8.87894 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.048426 B = 0.002109 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.059366 B =13272.899634 C =13511.088695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.094 4.094 11 C -0.103 4.103 12 C -0.105 4.105 13 C 0.467 3.533 14 O -0.543 6.543 15 O -0.353 6.353 16 C 0.067 3.933 17 C -0.031 4.031 18 C -0.230 4.230 19 C 0.028 3.972 20 N -0.506 5.506 21 C 0.018 3.982 22 S 0.150 5.850 23 H 0.265 0.735 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.187 0.813 37 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.024 -17.257 -2.242 33.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.142 4.142 13 C 0.312 3.688 14 O -0.433 6.433 15 O -0.270 6.270 16 C -0.007 4.007 17 C -0.070 4.070 18 C -0.352 4.352 19 C -0.123 4.123 20 N -0.220 5.220 21 C -0.278 4.278 22 S 0.403 5.597 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.204 0.796 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 29.427 -16.854 -2.920 34.037 hybrid contribution -0.256 1.081 0.895 1.427 sum 29.171 -15.772 -2.025 33.224 Atomic orbital electron populations 1.70066 1.08151 1.28047 1.52907 1.26019 0.95635 1.03468 0.94371 0.85682 0.79411 0.78558 0.79145 1.19248 1.20931 1.17423 1.21553 0.92184 0.93190 1.49878 0.94446 1.19585 0.93835 0.95851 0.96255 1.21330 0.93255 0.96873 1.01745 1.21396 0.95292 0.94903 1.02458 1.21513 0.84879 0.99757 1.08073 1.24318 0.92576 0.81049 0.70897 1.90672 1.71375 1.34304 1.46905 1.86470 1.22117 1.34525 1.83895 1.23124 0.76137 0.98743 1.02706 1.19827 0.85631 0.94849 1.06723 1.25829 1.00813 1.12761 0.95751 1.22106 0.86985 1.02005 1.01192 1.66389 1.18366 1.16768 1.20475 1.28973 1.05603 1.02436 0.90827 1.84114 0.98820 1.66204 1.10584 0.92568 0.96644 0.96723 0.92132 0.92164 0.92389 0.92282 0.85324 0.85353 0.91690 0.91349 0.86865 0.88095 0.79597 0.75668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 2 C 0.00 0.10 5.47 84.65 0.46 0.56 16 3 Si 0.95 45.31 27.47 68.60 1.88 47.19 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 7 C -0.53 -30.73 9.66 25.60 0.25 -30.48 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.44 5.15 30.59 0.16 -3.28 16 11 C -0.10 -3.06 4.50 30.59 0.14 -2.93 16 12 C -0.11 -2.26 5.81 29.85 0.17 -2.09 16 13 C 0.47 11.37 7.96 71.24 0.57 11.94 16 14 O -0.54 -17.14 15.73 21.97 0.35 -16.79 16 15 O -0.35 -7.01 10.22 -51.42 -0.53 -7.54 16 16 C 0.07 1.13 5.45 71.98 0.39 1.52 16 17 C -0.03 -0.34 6.13 29.85 0.18 -0.16 16 18 C -0.23 -2.95 5.85 24.64 0.14 -2.80 16 19 C 0.03 0.42 11.25 83.66 0.94 1.36 16 20 N -0.51 -8.57 10.54 -203.74 -2.15 -10.72 16 21 C 0.02 0.21 12.23 130.65 1.60 1.81 16 22 S 0.15 1.60 23.22 -56.49 -1.31 0.28 16 23 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 25 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 29 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.13 2.23 8.14 -2.39 -0.02 2.22 16 32 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -73.89 333.90 4.66 -69.23 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 0.99 Total: 3.46 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 5.12 Total: -25.28 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.85 Total: -70.56 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.18 Total: -24.33 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.31 Total: 0.28 kcal Total: -73.89 4.66 -69.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811118284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.391 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds