Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47056 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99962 * 3 2 1 6 6 H 1.48492 * 109.47141 * 149.99985 * 3 2 1 7 7 C 1.37878 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47376 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99525 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00535 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00204 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46957 * 179.97438 * 14 13 11 16 16 N 1.46503 * 109.46884 * 180.02562 * 15 14 13 17 17 C 1.34953 * 126.03708 * 125.00557 * 16 15 14 18 18 C 1.35312 * 107.74266 * 180.29813 * 17 16 15 19 19 C 1.39864 * 107.92555 * 359.58049 * 18 17 16 20 20 N 1.48018 * 125.90473 * 180.16634 * 19 18 17 21 21 O 1.21796 * 120.00305 * 180.27306 * 20 19 18 22 22 O 1.21800 * 119.99508 * 0.27966 * 20 19 18 23 23 N 1.30838 * 108.19852 * 0.42314 * 19 18 17 24 24 H 0.96994 * 119.99865 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47632 * 59.99356 * 9 7 2 26 26 H 1.09003 * 109.46742 * 299.99028 * 9 7 2 27 27 H 1.08996 * 109.47670 * 59.99625 * 10 9 7 28 28 H 1.09001 * 109.47080 * 299.99461 * 10 9 7 29 29 H 1.09009 * 109.46867 * 60.00108 * 14 13 11 30 30 H 1.08996 * 109.47681 * 300.00062 * 14 13 11 31 31 H 1.08996 * 109.47114 * 60.00769 * 15 14 13 32 32 H 1.08995 * 109.47447 * 300.00139 * 15 14 13 33 33 H 1.08002 * 126.12372 * 0.02786 * 17 16 15 34 34 H 1.08008 * 126.03671 * 179.71187 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1327 -1.5901 -0.0005 13 8 6.1998 -3.7990 0.0003 14 6 7.6497 -3.7230 -0.0004 15 6 8.2345 -5.1368 0.0009 16 7 9.6975 -5.0601 0.0008 17 6 10.5232 -5.6429 0.8952 18 6 11.7931 -5.3271 0.5509 19 6 11.7424 -4.5319 -0.5985 20 7 12.9077 -3.9676 -1.3158 21 8 12.7386 -3.2820 -2.3082 22 8 14.0359 -4.1890 -0.9136 23 7 10.4865 -4.3682 -0.9271 24 1 -0.4849 0.8400 0.0004 25 1 3.8746 -0.6807 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.6586 -3.1502 -0.8902 28 1 3.6579 -3.1505 0.8897 29 1 7.9860 -3.1902 0.8892 30 1 7.9854 -3.1914 -0.8907 31 1 7.8983 -5.6698 -0.8885 32 1 7.8989 -5.6680 0.8915 33 1 10.2236 -6.2488 1.7376 34 1 12.6879 -5.6365 1.0706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -5.512626 kcal Electronic energy + Delta-G solvation = -20706.658280 eV Core-core repulsion = 17031.659925 eV Total energy + Delta-G solvation = -3674.998355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.85609 -41.89520 -40.34225 -36.95974 -36.85866 -34.77204 -33.74306 -31.69563 -31.44695 -30.18478 -27.58531 -26.43129 -23.95125 -22.38144 -22.00789 -21.66872 -20.04947 -19.27276 -18.89531 -18.09242 -17.89504 -17.16071 -16.87634 -16.80713 -16.18370 -15.45062 -14.88805 -14.48832 -14.33180 -14.21813 -13.40033 -13.26363 -12.77127 -12.38637 -12.35580 -12.02738 -11.98395 -11.65442 -11.56661 -11.52485 -11.11313 -10.82300 -10.69214 -10.47200 -10.28486 -10.10180 -9.84615 -9.76999 -9.35385 -8.63236 -6.14776 -4.15511 -0.36142 0.29248 0.91103 1.61748 1.77934 2.45196 2.73184 3.29010 3.36427 3.44374 3.53608 3.86445 4.11801 4.26593 4.39333 4.53873 4.56001 4.56991 4.96387 5.02969 5.15913 5.19853 5.30419 5.80815 5.83809 5.87049 5.88445 6.20584 6.25947 6.53647 7.12434 7.19159 7.26325 7.60996 7.94970 8.37592 8.86663 9.46653 10.97618 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.002613 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.681244 B =10714.619734 C =11353.874309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.093 4.093 11 C 0.460 3.540 12 O -0.503 6.503 13 O -0.361 6.361 14 C 0.049 3.951 15 C 0.130 3.870 16 N -0.326 5.326 17 C 0.079 3.921 18 C -0.214 4.214 19 C 0.120 3.880 20 N 0.055 4.945 21 O -0.125 6.125 22 O -0.131 6.131 23 N -0.208 5.208 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.204 0.796 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.573 -15.865 3.439 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.304 3.696 12 O -0.389 6.389 13 O -0.279 6.279 14 C -0.026 4.026 15 C 0.010 3.990 16 N -0.116 5.116 17 C -0.066 4.066 18 C -0.245 4.245 19 C -0.124 4.124 20 N 0.582 4.418 21 O -0.346 6.346 22 O -0.347 6.347 23 N -0.040 5.040 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.221 0.779 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.170 -15.176 2.983 25.418 hybrid contribution 1.269 0.776 0.363 1.532 sum 21.440 -14.400 3.346 26.043 Atomic orbital electron populations 1.69893 1.06271 1.27186 1.50312 1.24951 0.94734 0.99221 0.94128 0.86808 0.80519 0.83412 0.78879 1.20080 1.21235 1.18674 1.20991 0.88679 0.94839 1.52215 0.90593 1.19505 0.97074 0.89431 0.98031 1.21591 0.82545 1.03807 1.05069 1.24898 0.92686 0.80563 0.71451 1.90665 1.70447 1.32895 1.44903 1.86478 1.19004 1.37111 1.85269 1.22971 0.79523 0.95604 1.04543 1.21857 0.71364 0.98529 1.07242 1.48722 1.07032 1.36482 1.19318 1.22910 0.88709 0.98901 0.96129 1.21301 0.99504 1.05456 0.98198 1.22719 0.87724 1.04351 0.97590 1.42249 1.00462 0.99097 0.99992 1.94648 1.92241 1.33892 1.13781 1.94585 1.06294 1.63432 1.70409 1.77452 1.00120 1.14265 1.12190 0.92500 0.95586 0.95962 0.88040 0.88058 0.90595 0.89622 0.86884 0.85570 0.77911 0.80441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.53 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 -0.07 3.33 -27.88 -0.09 -0.16 16 10 C -0.09 -1.65 5.75 -27.88 -0.16 -1.81 16 11 C 0.46 7.77 7.96 36.01 0.29 8.06 16 12 O -0.50 -10.21 15.73 -18.75 -0.30 -10.50 16 13 O -0.36 -4.63 10.22 -39.26 -0.40 -5.03 16 14 C 0.05 0.51 5.65 37.16 0.21 0.72 16 15 C 0.13 0.77 6.89 -4.04 -0.03 0.74 16 16 N -0.33 -2.42 3.68 -61.37 -0.23 -2.65 16 17 C 0.08 0.36 11.45 -17.22 -0.20 0.17 16 18 C -0.21 -1.44 10.52 -40.02 -0.42 -1.86 16 19 C 0.12 1.29 8.15 -146.41 -1.19 0.09 16 20 N 0.06 0.69 4.45 33.02 0.15 0.83 16 21 O -0.13 -1.75 19.23 -29.46 -0.57 -2.32 16 22 O -0.13 -1.54 19.04 -29.46 -0.56 -2.11 16 23 N -0.21 -2.35 12.38 33.01 0.41 -1.94 16 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.08 0.82 8.13 -51.92 -0.42 0.40 16 30 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.13 0.31 8.07 -51.93 -0.42 -0.11 16 33 H 0.20 -0.05 8.06 -52.49 -0.42 -0.47 16 34 H 0.18 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -34.93 317.61 -6.36 -41.28 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -3.73 Total: -6.33 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.03 Total: -6.89 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 1.10 Total: -29.99 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.82 Total: -19.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.93 -6.36 -41.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.768 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds