Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47056 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.46936 * 29.99962 * 3 2 1 6 6 H 1.48492 * 109.47141 * 149.99985 * 3 2 1 7 7 C 1.37878 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47376 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99525 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00535 * 179.97438 * 11 10 9 14 14 C 1.45196 * 117.00204 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46957 * 179.97438 * 14 13 11 16 16 N 1.46503 * 109.46884 * 180.02562 * 15 14 13 17 17 C 1.34953 * 126.03708 * 125.00557 * 16 15 14 18 18 C 1.35312 * 107.74266 * 180.29813 * 17 16 15 19 19 C 1.39864 * 107.92555 * 359.58049 * 18 17 16 20 20 N 1.48018 * 125.90473 * 180.16634 * 19 18 17 21 21 O 1.21796 * 120.00305 * 180.27306 * 20 19 18 22 22 O 1.21800 * 119.99508 * 0.27966 * 20 19 18 23 23 N 1.30838 * 108.19852 * 0.42314 * 19 18 17 24 24 H 0.96994 * 119.99865 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47632 * 59.99356 * 9 7 2 26 26 H 1.09003 * 109.46742 * 299.99028 * 9 7 2 27 27 H 1.08996 * 109.47670 * 59.99625 * 10 9 7 28 28 H 1.09001 * 109.47080 * 299.99461 * 10 9 7 29 29 H 1.09009 * 109.46867 * 60.00108 * 14 13 11 30 30 H 1.08996 * 109.47681 * 300.00062 * 14 13 11 31 31 H 1.08996 * 109.47114 * 60.00769 * 15 14 13 32 32 H 1.08995 * 109.47447 * 300.00139 * 15 14 13 33 33 H 1.08002 * 126.12372 * 0.02786 * 17 16 15 34 34 H 1.08008 * 126.03671 * 179.71187 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1327 -1.5901 -0.0005 13 8 6.1998 -3.7990 0.0003 14 6 7.6497 -3.7230 -0.0004 15 6 8.2345 -5.1368 0.0009 16 7 9.6975 -5.0601 0.0008 17 6 10.5232 -5.6429 0.8952 18 6 11.7931 -5.3271 0.5509 19 6 11.7424 -4.5319 -0.5985 20 7 12.9077 -3.9676 -1.3158 21 8 12.7386 -3.2820 -2.3082 22 8 14.0359 -4.1890 -0.9136 23 7 10.4865 -4.3682 -0.9271 24 1 -0.4849 0.8400 0.0004 25 1 3.8746 -0.6807 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.6586 -3.1502 -0.8902 28 1 3.6579 -3.1505 0.8897 29 1 7.9860 -3.1902 0.8892 30 1 7.9854 -3.1914 -0.8907 31 1 7.8983 -5.6698 -0.8885 32 1 7.8989 -5.6680 0.8915 33 1 10.2236 -6.2488 1.7376 34 1 12.6879 -5.6365 1.0706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -27.654772 kcal Electronic energy + Delta-G solvation = -20707.618435 eV Core-core repulsion = 17031.659925 eV Total energy + Delta-G solvation = -3675.958511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.60444 -42.61065 -41.61021 -38.05127 -37.87992 -35.66927 -35.46279 -33.48195 -32.14446 -30.94611 -28.78185 -27.85402 -24.85926 -23.56961 -22.88621 -22.42297 -21.54327 -20.02901 -19.69097 -19.43172 -18.95841 -18.54370 -17.97898 -17.65305 -17.31104 -16.45495 -16.26977 -15.80408 -15.15036 -14.88499 -14.79558 -14.52438 -14.38038 -13.58827 -13.33741 -13.16486 -12.98141 -12.95336 -12.76215 -12.49700 -12.39998 -12.27371 -12.05809 -11.88373 -11.78204 -11.58085 -11.43966 -11.26474 -10.81071 -10.31883 -8.33991 -6.37775 -1.23384 -0.41141 0.36680 0.96068 1.11252 1.17483 1.31813 1.34826 1.46922 1.75906 2.31760 2.95902 3.01749 3.39531 3.52757 3.64974 3.81659 4.02751 4.06324 4.22417 4.27869 4.35834 4.39794 4.47090 4.68322 4.82461 5.05250 5.16273 5.27984 5.33610 5.44958 5.56104 5.61562 6.18960 6.35869 6.62809 6.72555 7.27629 8.81327 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.002613 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.681244 B =10714.619734 C =11353.874309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.529 4.529 8 H 0.056 0.944 9 C -0.002 4.002 10 C -0.088 4.088 11 C 0.472 3.528 12 O -0.543 6.543 13 O -0.342 6.342 14 C 0.046 3.954 15 C 0.136 3.864 16 N -0.322 5.322 17 C 0.110 3.890 18 C -0.218 4.218 19 C 0.097 3.903 20 N 0.054 4.946 21 O -0.196 6.196 22 O -0.104 6.104 23 N -0.267 5.267 24 H 0.268 0.732 25 H 0.017 0.983 26 H 0.012 0.988 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.178 0.822 33 H 0.264 0.736 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.575 -18.152 5.489 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.039 4.039 10 C -0.125 4.125 11 C 0.317 3.683 12 O -0.432 6.432 13 O -0.258 6.258 14 C -0.029 4.029 15 C 0.017 3.983 16 N -0.112 5.112 17 C -0.035 4.035 18 C -0.248 4.248 19 C -0.145 4.145 20 N 0.576 4.424 21 O -0.400 6.400 22 O -0.331 6.331 23 N -0.100 5.100 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.195 0.805 33 H 0.280 0.720 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 21.131 -17.422 4.917 27.825 hybrid contribution 0.986 1.289 -0.136 1.628 sum 22.117 -16.133 4.781 27.790 Atomic orbital electron populations 1.70005 1.07763 1.28167 1.52150 1.25765 0.95461 1.02743 0.94274 0.85877 0.79334 0.79710 0.79078 1.19587 1.20473 1.18332 1.21330 0.90802 0.93956 1.50637 0.92589 1.19355 0.94491 0.93095 0.96998 1.21363 0.83675 1.00472 1.07017 1.24479 0.92385 0.80882 0.70564 1.90665 1.71171 1.34491 1.46896 1.86417 1.20552 1.34521 1.84300 1.23170 0.77643 0.98904 1.03228 1.22079 0.70352 0.95485 1.10344 1.48900 1.07489 1.35826 1.18939 1.23888 0.87059 0.96897 0.95667 1.21809 1.01674 1.04569 0.96787 1.22903 0.87004 1.05711 0.98834 1.42560 1.01244 0.98737 0.99832 1.94651 1.92621 1.36827 1.15872 1.94522 1.07289 1.61824 1.69462 1.77371 1.00930 1.16884 1.14823 0.92299 0.96486 0.96941 0.86379 0.85922 0.90836 0.92314 0.85830 0.80492 0.72040 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 2 C 0.02 0.90 5.47 84.66 0.46 1.37 16 3 Si 0.94 45.00 27.47 68.60 1.88 46.89 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.26 -12.23 6.54 99.48 0.65 -11.58 16 7 C -0.53 -28.94 9.66 25.60 0.25 -28.69 16 8 H 0.06 3.21 7.99 -2.91 -0.02 3.18 16 9 C 0.00 -0.08 3.33 29.85 0.10 0.02 16 10 C -0.09 -2.99 5.75 29.85 0.17 -2.82 16 11 C 0.47 15.16 7.96 71.24 0.57 15.73 16 12 O -0.54 -21.73 15.73 21.95 0.35 -21.38 16 13 O -0.34 -7.85 10.22 -51.41 -0.53 -8.38 16 14 C 0.05 0.86 5.65 71.98 0.41 1.27 16 15 C 0.14 1.05 6.89 86.38 0.60 1.65 16 16 N -0.32 -3.72 3.68 -348.06 -1.28 -5.00 16 17 C 0.11 0.45 11.45 83.54 0.96 1.41 16 18 C -0.22 -2.22 10.52 21.99 0.23 -1.99 16 19 C 0.10 2.03 8.15 130.33 1.06 3.10 16 20 N 0.05 1.40 4.45 -49.45 -0.22 1.18 16 21 O -0.20 -6.01 19.23 18.89 0.36 -5.65 16 22 O -0.10 -2.43 19.04 18.89 0.36 -2.07 16 23 N -0.27 -5.92 12.38 -49.46 -0.61 -6.53 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.02 0.81 7.16 -2.39 -0.02 0.79 16 26 H 0.01 0.59 7.53 -2.39 -0.02 0.57 16 27 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 30 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.18 -0.34 8.07 -2.39 -0.02 -0.36 16 33 H 0.26 -2.26 8.06 -2.91 -0.02 -2.28 16 34 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -80.99 317.61 6.49 -74.50 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: 1.07 Total: -7.74 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.80 Total: -8.96 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.81 Total: -67.21 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: 0.54 Total: -37.48 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -80.99 6.49 -74.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.847 kcal (2) G-P(sol) polarization free energy of solvation -80.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds