Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30659 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48501 * 109.46761 * 269.99583 * 3 2 1 5 5 H 1.48497 * 109.47339 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.46940 * 150.00221 * 3 2 1 7 7 C 1.40210 * 119.99292 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99160 * 197.87010 * 7 2 1 9 9 C 1.41094 * 120.00383 * 17.87324 * 7 2 1 10 10 C 1.40890 * 120.10125 * 204.63624 * 9 7 2 11 11 C 1.36320 * 119.88778 * 180.02562 * 10 9 7 12 12 C 1.39997 * 120.10526 * 0.02562 * 11 10 9 13 13 C 1.47678 * 119.89076 * 179.97438 * 12 11 10 14 14 O 1.21690 * 119.99857 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00065 * 179.97438 * 13 12 11 16 16 O 1.41596 * 120.00265 * 180.02562 * 15 13 12 17 17 C 1.35722 * 114.00447 * 180.02562 * 16 15 13 18 18 C 1.38852 * 120.07012 * 89.99582 * 17 16 15 19 19 C 1.38115 * 119.93426 * 179.97438 * 18 17 16 20 20 C 1.38282 * 120.06567 * 0.02562 * 19 18 17 21 21 C 1.38286 * 120.13638 * 359.97438 * 20 19 18 22 22 C 1.38111 * 120.06994 * 0.02562 * 21 20 19 23 23 C 1.40000 * 120.21607 * 0.23631 * 12 11 10 24 24 C 1.36307 * 120.10640 * 359.47895 * 23 12 11 25 25 H 0.97004 * 119.99986 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05879 * 359.97438 * 10 9 7 27 27 H 1.07996 * 119.94612 * 179.97438 * 11 10 9 28 28 H 0.96998 * 119.99705 * 0.02562 * 15 13 12 29 29 H 1.08007 * 120.03120 * 359.70746 * 18 17 16 30 30 H 1.07999 * 119.96270 * 180.02562 * 19 18 17 31 31 H 1.08001 * 119.92772 * 179.97438 * 20 19 18 32 32 H 1.08003 * 119.96580 * 180.02562 * 21 20 19 33 33 H 1.08002 * 120.03513 * 179.97438 * 22 21 20 34 34 H 1.08000 * 119.94730 * 179.72363 * 23 12 11 35 35 H 1.08005 * 120.05818 * 180.23173 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5382 1.4401 0.7000 7 6 2.0075 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2865 9 6 1.3530 -2.4066 -0.3761 10 6 1.8265 -3.6493 0.0892 11 6 1.1912 -4.7985 -0.2768 12 6 0.0703 -4.7452 -1.1139 13 6 -0.6140 -5.9932 -1.5079 14 8 -0.2037 -7.0655 -1.1045 15 7 -1.6935 -5.9444 -2.3133 16 8 -2.3500 -7.1409 -2.6906 17 6 -3.4205 -6.9508 -3.5030 18 6 -3.2549 -6.9418 -4.8815 19 6 -4.3463 -6.7486 -5.7056 20 6 -5.6030 -6.5637 -5.1590 21 6 -5.7712 -6.5721 -3.7864 22 6 -4.6837 -6.7648 -2.9572 23 6 -0.4006 -3.5132 -1.5832 24 6 0.2245 -2.3582 -1.2181 25 1 -0.4850 0.8401 0.0004 26 1 2.6919 -3.6914 0.7340 27 1 1.5536 -5.7516 0.0790 28 1 -2.0208 -5.0896 -2.6345 29 1 -2.2728 -7.0814 -5.3089 30 1 -4.2180 -6.7419 -6.7779 31 1 -6.4548 -6.4124 -5.8055 32 1 -6.7540 -6.4279 -3.3625 33 1 -4.8156 -6.7709 -1.8853 34 1 -1.2630 -3.4774 -2.2324 35 1 -0.1418 -1.4079 -1.5776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816684354.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = 4.022501 kcal Electronic energy + Delta-G solvation = -20299.279296 eV Core-core repulsion = 17035.543678 eV Total energy + Delta-G solvation = -3263.735618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09742 -40.29739 -38.93022 -37.90923 -35.71391 -33.83230 -32.03414 -31.79606 -31.33876 -30.37491 -27.65049 -24.09113 -23.71529 -23.38936 -22.78324 -21.59345 -19.98425 -19.37850 -18.22458 -17.72936 -17.21922 -16.96095 -16.59493 -15.80153 -15.71723 -15.66232 -15.16159 -14.87605 -14.52458 -14.46539 -13.98156 -13.79203 -13.62748 -13.54024 -13.23343 -12.87350 -12.65819 -12.57814 -12.40137 -11.92286 -11.78733 -11.41085 -11.16117 -11.02136 -10.11549 -10.03905 -9.87677 -9.62218 -9.46415 -8.81936 -6.51303 -0.35909 0.30852 0.36440 1.12588 1.35496 1.39998 1.44183 1.55098 2.05299 2.17267 2.73507 2.76051 3.42242 3.65171 3.89288 3.94113 4.04864 4.17001 4.24628 4.39632 4.41507 4.47046 4.74507 4.90551 4.98253 5.00415 5.10998 5.24705 5.32892 5.36365 5.43616 5.54818 5.67315 5.75016 5.86427 5.96090 6.09494 6.18809 6.47674 6.51212 6.74011 6.84523 7.35858 8.13158 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.003479 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.421131 B = 8047.124706 C = 8931.785664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.089 0.911 9 C 0.104 3.896 10 C -0.249 4.249 11 C -0.026 4.026 12 C -0.286 4.286 13 C 0.583 3.417 14 O -0.597 6.597 15 N -0.586 5.586 16 O -0.126 6.126 17 C 0.003 3.997 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.053 4.053 24 C -0.194 4.194 25 H 0.299 0.701 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.415 0.585 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -1.763 -10.546 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.182 4.182 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.268 4.268 11 C -0.045 4.045 12 C -0.291 4.291 13 C 0.378 3.622 14 O -0.479 6.479 15 N -0.294 5.294 16 O -0.118 6.118 17 C -0.042 4.042 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.072 4.072 24 C -0.213 4.213 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.259 0.741 29 H 0.147 0.853 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.365 -2.607 -10.171 15.473 hybrid contribution 0.211 0.698 0.155 0.745 sum -11.154 -1.909 -10.016 15.113 Atomic orbital electron populations 1.69761 1.09269 1.31833 1.30800 1.26952 0.95550 1.04892 0.90763 0.85079 0.79090 0.75079 0.79868 1.18281 1.18942 1.18079 1.20183 0.98900 0.92098 1.38051 0.89307 1.18147 0.91122 0.92929 0.87771 1.20859 1.05206 0.92421 1.08340 1.20463 0.92958 0.97425 0.93684 1.18754 1.04748 0.90236 1.15338 1.18746 0.77692 0.89580 0.76174 1.90658 1.67056 1.32321 1.57903 1.47999 1.28940 1.00405 1.52096 1.89161 1.42741 1.12138 1.67755 1.19438 0.87130 1.07270 0.90375 1.21786 1.01254 0.98202 0.92283 1.21492 0.91774 0.98715 1.01272 1.21822 0.98254 0.95677 0.95297 1.21487 0.99014 0.98915 0.93894 1.21786 0.92447 0.97945 1.01475 1.20677 0.97776 0.91460 0.97328 1.21005 1.00435 0.97265 1.02619 0.89000 0.87226 0.87693 0.74138 0.85318 0.82287 0.81691 0.82396 0.85493 0.86179 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.75 10.95 21.87 0.24 -36.51 16 2 C 0.04 1.71 5.13 85.35 0.44 2.15 16 3 Si 0.99 33.57 29.60 68.60 2.03 35.60 16 4 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 5 H -0.27 -8.53 7.11 99.48 0.71 -7.82 16 6 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 7 C -0.47 -22.80 9.04 23.45 0.21 -22.59 16 8 H 0.09 4.16 7.91 -2.91 -0.02 4.13 16 9 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 10 C -0.25 -12.14 9.73 22.47 0.22 -11.92 16 11 C -0.03 -1.25 9.52 22.25 0.21 -1.04 16 12 C -0.29 -13.34 5.89 -19.93 -0.12 -13.46 16 13 C 0.58 26.93 7.91 86.74 0.69 27.61 16 14 O -0.60 -31.73 16.74 13.02 0.22 -31.52 16 15 N -0.59 -22.44 6.29 -175.61 -1.10 -23.54 16 16 O -0.13 -4.78 10.99 37.10 0.41 -4.37 16 17 C 0.00 0.07 5.81 22.56 0.13 0.21 16 18 C -0.12 -2.66 9.99 22.39 0.22 -2.44 16 19 C -0.11 -1.80 10.04 22.25 0.22 -1.57 16 20 C -0.09 -1.21 10.04 22.29 0.22 -0.98 16 21 C -0.12 -1.84 10.04 22.25 0.22 -1.62 16 22 C -0.12 -2.74 9.99 22.39 0.22 -2.51 16 23 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 24 C -0.19 -9.39 8.63 22.47 0.19 -9.19 16 25 H 0.30 12.23 8.29 -92.71 -0.77 11.46 16 26 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.10 4.94 7.63 -2.91 -0.02 4.92 16 28 H 0.41 13.49 6.52 -92.71 -0.60 12.88 16 29 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.12 4.32 6.37 -2.91 -0.02 4.30 16 35 H 0.12 5.70 6.16 -2.91 -0.02 5.68 16 Total: -1.00 -65.45 313.95 5.50 -59.95 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.53 Total: 34.73 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.19 Total: -34.35 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.87 Total: -60.05 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: 0.63 Total: -35.89 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Total: -65.45 5.50 -59.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816684354.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.975 kcal (2) G-P(sol) polarization free energy of solvation -65.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds