Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 119.07811 * 2 1 4 4 C 1.32653 * 120.98403 * 180.02562 * 3 2 1 5 5 Cl 1.73605 * 120.41599 * 180.02562 * 4 3 2 6 6 C 1.38321 * 119.17148 * 359.97438 * 4 3 2 7 7 C 1.39524 * 118.31886 * 0.02562 * 6 4 3 8 8 N 1.38564 * 120.52324 * 180.02562 * 7 6 4 9 9 C 1.48566 * 110.99780 * 300.12247 * 8 7 6 10 10 C 1.54378 * 104.59376 * 200.95810 * 9 8 7 11 11 C 1.54258 * 105.05931 * 23.85692 * 10 9 8 12 12 O 1.42903 * 110.32520 * 118.99930 * 11 10 9 13 13 C 1.50702 * 110.31938 * 241.10222 * 11 10 9 14 14 H 1.08002 * 120.00299 * 118.55053 * 13 11 10 15 15 C 1.37884 * 119.99942 * 298.26612 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.48558 * 111.00238 * 184.70871 * 8 7 6 22 22 N 1.31750 * 119.07376 * 180.28366 * 2 1 3 23 23 H 1.09002 * 109.47633 * 89.99766 * 1 2 3 24 24 H 1.09007 * 109.47371 * 209.99827 * 1 2 3 25 25 H 1.08999 * 109.47085 * 329.99452 * 1 2 3 26 26 H 1.07997 * 120.84419 * 180.02562 * 6 4 3 27 27 H 1.09003 * 110.41029 * 82.17965 * 9 8 7 28 28 H 1.09000 * 110.40833 * 319.74088 * 9 8 7 29 29 H 1.08995 * 110.32376 * 264.95634 * 10 9 8 30 30 H 1.09010 * 110.32362 * 142.74775 * 10 9 8 31 31 H 0.96699 * 113.99905 * 62.82283 * 12 11 10 32 32 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 33 33 H 1.08997 * 110.41640 * 40.25343 * 21 8 7 34 34 H 1.09005 * 110.40400 * 277.81796 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1518 0.0000 4 6 3.4732 1.1959 -0.0005 5 17 4.3019 2.7214 0.0002 6 6 4.1872 0.0112 -0.0005 7 6 3.4769 -1.1897 -0.0005 8 7 4.1460 -2.4031 0.0000 9 6 5.0131 -2.5334 -1.1993 10 6 5.2445 -4.0524 -1.3487 11 6 4.0470 -4.7124 -0.6348 12 8 3.2952 -5.5050 -1.5560 13 6 4.5260 -5.5610 0.5149 14 1 4.2173 -5.3281 1.5233 15 6 5.3536 -6.6382 0.2786 16 7 5.7294 -6.9218 -0.9493 17 14 5.9410 -7.6946 1.7028 18 1 4.9772 -8.8015 1.9286 19 1 7.2767 -8.2589 1.3824 20 1 6.0362 -6.8632 2.9296 21 6 3.1928 -3.5368 -0.1139 22 7 2.1472 -1.1515 -0.0057 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.2672 0.0156 -0.0005 27 1 5.9606 -2.0182 -1.0412 28 1 4.5064 -2.1376 -2.0795 29 1 6.1787 -4.3421 -0.8677 30 1 5.2578 -4.3315 -2.4024 31 1 3.7900 -6.2454 -1.9329 32 1 6.3119 -7.6795 -1.1155 33 1 2.4012 -3.2981 -0.8242 34 1 2.7696 -3.7770 0.8615 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826614307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = 5.397017 kcal Electronic energy + Delta-G solvation = -20144.843895 eV Core-core repulsion = 16911.027783 eV Total energy + Delta-G solvation = -3233.816113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20155 -38.64319 -36.94767 -35.43235 -33.18919 -32.61777 -32.17562 -29.19945 -28.87381 -27.87551 -25.11835 -23.36807 -22.79782 -20.79461 -19.66383 -17.66436 -17.33354 -17.11508 -15.57519 -15.43380 -15.15941 -14.90811 -14.55372 -13.92322 -13.63524 -13.41385 -13.09227 -12.60002 -12.46762 -12.36669 -11.90944 -11.86063 -11.51803 -11.34368 -11.26882 -10.93803 -10.78076 -10.62359 -10.47793 -10.36397 -10.03799 -9.54433 -9.36398 -9.14315 -8.64932 -8.29433 -8.24488 -6.25481 -4.32013 0.83768 1.02118 1.53463 3.21772 3.29125 3.33452 3.52402 3.78025 3.98486 4.29070 4.49970 4.86572 5.02245 5.12589 5.33149 5.38822 5.49522 5.53608 5.63208 5.73794 5.84252 5.94460 6.08268 6.17502 6.48779 6.58528 6.69679 6.89052 7.04791 7.24257 7.40510 7.45423 7.75482 8.08445 8.11045 8.70963 9.32789 9.42308 10.81883 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.004441 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.475894 B = 6303.427977 C = 6707.098613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.359 3.641 3 N -0.547 5.547 4 C 0.237 3.763 5 Cl -0.023 7.023 6 C -0.236 4.236 7 C 0.377 3.623 8 N -0.441 5.441 9 C 0.044 3.956 10 C -0.123 4.123 11 C 0.247 3.753 12 O -0.590 6.590 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.065 3.935 22 N -0.546 5.546 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.384 0.616 32 H 0.267 0.733 33 H 0.063 0.937 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 13.157 -0.606 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 N -0.267 5.267 4 C 0.067 3.933 5 Cl 0.005 6.995 6 C -0.263 4.263 7 C 0.136 3.864 8 N -0.157 5.157 9 C -0.081 4.081 10 C -0.162 4.162 11 C 0.207 3.793 12 O -0.399 6.399 13 C -0.562 4.562 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.060 4.060 22 N -0.268 5.268 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.173 0.827 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.241 13.490 -0.083 14.141 hybrid contribution 1.636 -0.701 0.140 1.785 sum -2.605 12.789 0.057 13.052 Atomic orbital electron populations 1.20593 0.85182 1.04324 1.04078 1.23042 0.97821 0.81774 0.88328 1.67611 1.08099 1.31197 1.19832 1.21647 0.89862 0.87556 0.94258 1.98409 1.75320 1.29605 1.96147 1.22029 1.02997 0.90551 1.10693 1.20510 0.87778 0.91729 0.86391 1.62025 1.17684 0.99476 1.36540 1.23335 0.95793 1.01220 0.87733 1.22975 1.03129 0.89353 1.00717 1.19281 0.85369 0.87332 0.87307 1.86094 1.44801 1.46245 1.62810 1.21640 1.29041 1.11910 0.93640 0.91854 1.25002 0.95131 0.97134 0.96106 1.69678 1.36061 1.29015 1.19198 0.86451 0.77963 0.80393 0.82391 1.20491 1.21134 1.19759 1.22991 0.92998 0.87928 1.02117 1.68403 1.08888 1.30217 1.19281 0.89408 0.89164 0.89539 0.82698 0.90108 0.93628 0.89853 0.91943 0.76465 0.92287 0.91890 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.32 36.00 0.37 -0.53 16 2 C 0.36 5.44 7.64 -157.24 -1.20 4.23 16 3 N -0.55 -8.35 10.33 -7.93 -0.08 -8.43 16 4 C 0.24 3.48 7.33 -17.17 -0.13 3.35 16 5 Cl -0.02 -0.28 29.15 -51.86 -1.51 -1.79 16 6 C -0.24 -3.59 9.30 -39.07 -0.36 -3.95 16 7 C 0.38 6.67 6.23 -154.76 -0.96 5.70 16 8 N -0.44 -8.55 5.41 -168.62 -0.91 -9.46 16 9 C 0.04 0.80 5.94 -2.18 -0.01 0.78 16 10 C -0.12 -2.66 5.56 -25.35 -0.14 -2.80 16 11 C 0.25 5.91 1.06 -90.39 -0.10 5.82 16 12 O -0.59 -14.82 12.95 -35.23 -0.46 -15.28 16 13 C -0.52 -13.66 8.09 -34.44 -0.28 -13.94 16 14 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 15 C 0.07 1.74 5.02 -17.82 -0.09 1.65 16 16 N -0.90 -23.13 10.80 55.43 0.60 -22.53 16 17 Si 0.90 20.33 29.54 -169.99 -5.02 15.30 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 C 0.07 1.42 5.16 -2.19 -0.01 1.41 16 22 N -0.55 -9.53 8.54 -9.98 -0.09 -9.62 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.16 2.06 7.99 -52.49 -0.42 1.64 16 27 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.05 0.79 7.97 -51.93 -0.41 0.37 16 29 H 0.08 1.95 7.25 -51.93 -0.38 1.58 16 30 H 0.06 1.35 7.98 -51.92 -0.41 0.93 16 31 H 0.38 9.72 7.28 45.56 0.33 10.05 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.06 1.37 7.21 -51.93 -0.37 1.00 16 34 H 0.09 1.92 7.67 -51.93 -0.40 1.52 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -27.31 301.41 -9.12 -36.43 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.28 Total: 9.09 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.91 Total: 1.73 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.48 Total: -50.04 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.46 Total: -15.28 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.31 -9.12 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826614307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.831 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds